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Cyberinfrastructure and its Role in Science

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Cameron Kiddle
Cameron Kiddle

This presentation examines some of the challenges scientists face and describes various cyberinfrastructure technologies that help address these challenges. Example projects employing cyberinfrastructure technologies that we have worked on at the Grid Research Centre, including the GeoChronos project, are also presented. This presentation was given at the IAI International Wireless Sensor Networks Summer School held at the University of Alberta on July 6th, 2009.

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Cyberinfrastructure and its Role in Science Cameron Kiddle Research Fellow, Grid Research Centre Adjunct Assistant Professor, Department of Computer Science, University of Calgary Distributed Systems Architect, WestGrid
Outline ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Collaboration Challenges ,[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Data Challenges ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Application Challenges ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Cyberinfrastructure ,[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Cyberinfrastructure Technologies ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Grid Computing ,[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure - Resources Shared by Virtual Organization X Resources Shared by Virtual Organization Y Domain A Domain B Domain C
Grid Middleware ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Key Grid Middleware Services ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Benefits of Grid Computing ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Example Grid Projects IAI Summer School July 6, 2009 Cyberinfrastructure - Name Description LHC Computing Grid http://lcg.web.cern.ch/ data storage and analysis infrastructure for the high energy physics community using the Large Hadron Collider (LHC) at CERN (ATLAS Tier-1 site at TRIUMF in British Columbia) Network for Earthquake Engineering Simulation (NEES) http://www.nees.org/ a US national network of 15 facilities to study the impact of earthquakes on buildings, bridges, etc. Expanding GEOsciences on DEmand (EGEODE) http://www.egeode.org/ a virtual organization (VO) associated with EGEE that is dedicated to research in geoscience for both public and private industrial R&D and academic laboratories International Virtual Observatory Alliance (IVOA) http://www.ivoa.net/ development of standards and infrastructure to share and analyze astronomical archives from around the world
Cloud Computing ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Cloud Computing Solutions IAI Summer School July 6, 2009 Cyberinfrastructure -
Benefits of Cloud Computing ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Cloud Computing Case Study: Application Popularity on Facebook ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure - Monthly Active Users vs. Rank of Facebook Applications (September 12, 2008)
Cloud Computing Case Study: Shrek (Dreamworks) ,[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure - (Source: R. Rowe. DreamWorks Animation "Shrek the Third": Linux Feeds an Ogre. Linux Journal . June 5, 2007. (http://www.linuxjournal.com/article/9653)) Time to Render 1 CPU 100 CPUs 10000 CPUs Shrek 571 years 5.7 years 21 days Shrek 2 1142 years 11.4 years 42 days Shrek 3 2283 years 22.8 years 83 days
Cloud Computing Case Study: Animoto ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure - (Source: D. Barker. You Need 3,500 Servers by When?! On-demand Enterprise . 2008.07.07)
Virtualization ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Web 2.0 – The “Social Web” ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Social Networking Sites/Platforms IAI Summer School July 6, 2009 Cyberinfrastructure -
Web Portals / Scientific Gateways ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Semantic Web ,[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Confederation Bridge ICE Force Monitoring Project ,[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure - ( http://www.confederationbridge.com ) ( http://www.confederationbridge.com )
ICE Force - Technologies Used ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Molecular Dynamics Simulations (GROMACS) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure - ( http://moose.bio.ucalgary.ca/ )
GROMACS - Grid Enabled Solution ,[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
GROMACS - Portal IAI Summer School July 6, 2009 Cyberinfrastructure -
GROMACS - Technologies Used ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Web Service based Grid Environment for Canada IAI Summer School July 6, 2009 Cyberinfrastructure - ,[object Object]
GT4-based Grid - Model Schemas ,[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure - System Model Class Diagram
GT4-based Grid – Viewing Resource Information ,[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
GT4-based Grid - Technologies Used ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Example: Fire Simulation ,[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Fire Simulation - Technologies Used ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
Example: Rendering on the Cloud ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
GeoChronos - Collaboration ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure - http://geochronos.org/
GeoChronos - Data ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
GeoChronos - Applications ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],IAI Summer School July 6, 2009 Cyberinfrastructure -
GeoChronos - Project Team IAI Summer School July 6, 2009 Cyberinfrastructure - Dr. Arturo Sanchez-Azofeifa University of Alberta Dr. John Gamon University of Alberta Dr. Benoit Rivard University of Victoria Dr. Rob Simmonds University of Calgary Prinicipal Investigators Project Coordination Platform Development Domain Scientists
GeoChronos - Virtual Organization IAI Summer School July 6, 2009 Cyberinfrastructure -
Contact Information IAI Summer School July 6, 2009 Cyberinfrastructure - Cameron Kiddle [email_address] http://pages.cspc.ucalgary.ca/~kiddlec/ http://grid.ucalgary.ca/

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Cyberinfrastructure and its Role in Science

  • 1. Cyberinfrastructure and its Role in Science Cameron Kiddle Research Fellow, Grid Research Centre Adjunct Assistant Professor, Department of Computer Science, University of Calgary Distributed Systems Architect, WestGrid
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  • 12. Example Grid Projects IAI Summer School July 6, 2009 Cyberinfrastructure - Name Description LHC Computing Grid http://lcg.web.cern.ch/ data storage and analysis infrastructure for the high energy physics community using the Large Hadron Collider (LHC) at CERN (ATLAS Tier-1 site at TRIUMF in British Columbia) Network for Earthquake Engineering Simulation (NEES) http://www.nees.org/ a US national network of 15 facilities to study the impact of earthquakes on buildings, bridges, etc. Expanding GEOsciences on DEmand (EGEODE) http://www.egeode.org/ a virtual organization (VO) associated with EGEE that is dedicated to research in geoscience for both public and private industrial R&D and academic laboratories International Virtual Observatory Alliance (IVOA) http://www.ivoa.net/ development of standards and infrastructure to share and analyze astronomical archives from around the world
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  • 14. Cloud Computing Solutions IAI Summer School July 6, 2009 Cyberinfrastructure -
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  • 21. Social Networking Sites/Platforms IAI Summer School July 6, 2009 Cyberinfrastructure -
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  • 28. GROMACS - Portal IAI Summer School July 6, 2009 Cyberinfrastructure -
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  • 41. GeoChronos - Project Team IAI Summer School July 6, 2009 Cyberinfrastructure - Dr. Arturo Sanchez-Azofeifa University of Alberta Dr. John Gamon University of Alberta Dr. Benoit Rivard University of Victoria Dr. Rob Simmonds University of Calgary Prinicipal Investigators Project Coordination Platform Development Domain Scientists
  • 42. GeoChronos - Virtual Organization IAI Summer School July 6, 2009 Cyberinfrastructure -
  • 43. Contact Information IAI Summer School July 6, 2009 Cyberinfrastructure - Cameron Kiddle [email_address] http://pages.cspc.ucalgary.ca/~kiddlec/ http://grid.ucalgary.ca/