Bhagat Myexperiment Bosc2008

Jiten Bhagat University of Manchester David De Roure – University of Southampton Carole Goble – University of Manchester Don Cruickshank – University of Southampton Marco Roos – University of Amsterdam www.myexperiment.org myExperiment: social software for sharing workflows

Use myExperiment to… Build packs of related content Share your workflows and files Control access to your workflows and files Find workflows and files that others have shared Maintain and use different versions of workflows Tag and rate workflows and files Write reviews and comments Have discussions and collaborate Create and join groups of similar interests Find people and make friends Send messages to other people on myExperiment Build your profile and reputation ,[object Object],[object Object],Reuse and repurpose workflows (and other files!)

Bare Facts ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Mar 2007 – start of project Jul 2007 – closed beta Nov 2007 – open beta

Vitals – July 2008 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],myExperiment has over 950 users (over 1400 unique IP visits last month) , 80 groups, 290 workflows, 100 files and 10 packs … with over 46,000 downloads of workflows/files

SETTING THE CONTEXT ,[object Object]

Taverna Workflow Workbench ,[object Object],[object Object],[object Object],[object Object],Part of the myGrid project

Who uses Taverna? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Taverna Kepler Triana BPEL Ptolemy II

Encapsulating your Experiment ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

But… ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Recycling, Reuse, Repurposing ,[object Object],[object Object],[object Object],[object Object],[object Object]

As Taverna’s popularity increased we observed a workflow exchange activity emerging amongst our users and a strong desire for a place were workflows could be collected and opened to peer review.

myExperiment enables scientists to discover , reuse and repurpose workflows, and to enact them from a web page using a remote enactment service.

Workflow Components ,[object Object],[object Object]

myExperiment focuses on the special requirements of scientists, providing support for: ownership , credit and attribution , licensing , visibility and sharing .

Just Enough Sharing…. ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

myExperiment aids reuse because workflows can be discovered not just by what they do but based on how they are used by the community , with tags and reviews adding to the ‘collective intelligence’.

Workflows have friends (and social metadata) too! ,[object Object],[object Object]

myExperiment is not just about workflows, it’s about sharing digital objects, which include data, results, provenance information, tags, associated documentation, etc. … collected together to form scientific research objects , for example to record an experiment.

myExperiment functionality can be accessed through simple RESTful APIs so that it can be accessed through existing interfaces, including wikis, web pages… and Taverna. Also enables the creation of other interfaces such as Google Gadgets, myExperiment add-ons for sites such as Facebook and functionality mashups over myExperiment.

Taverna Plugin ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

myExperiment is an open source codebase (released under the BSD licence). Individuals and laboratories are free to install their own myExperiment instances.

Developer Support ,[object Object],[object Object]

Future ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Future – BioCatalogue ,[object Object],[object Object],http://www.biocatalogue.org/

Come meet us at ISMB ,[object Object],[object Object],For more information… http://www.myexperiment.org http://wiki.myexperiment.org http://rubyforge.org/projects/myexperiment/ Mailing list - [email_address] http://www.mygrid.org.uk http://www.biocatalogue.org Mailing list - [email_address]

Bhagat Myexperiment Bosc2008

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Bhagat Myexperiment Bosc2008