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Human Genetic Susceptibility
to M. tuberculosis
Credit seminar
2nd semester
Submitted by:
Shweta kaul
Master of life sciences with specialization in Human Genetics
Registration number:15mslshg02
Centre of Human Genetics and Molecular Medicine
School of Health Sciences
Central university of Punjab, Bathinda, 151001
1/29/2016 1
Tuberculosis
 It is a contagious disease caused by the airborne bacterium
M. tuberculosis
 Infects primarily lungs causing primary infection
 Pulmonary TB and Extra pulmonary TB
 Spreads through lymph nodes and bloodstream to any organ
of the body
 Contagious as can spread through cough, sneeze, or speak
 Person suffers cough, weight loss, loss of appetite, fever,
coughing up blood and night sweats
 Difference between active form of disease and infection of
lungs
 Touching someone who has disease does not necessarily
spread the disease
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Tuberculosis
• Two stages – pulmonary TB and extra
pulmonary TB(in very rare cases example
in immunosuppressed individuals)
Pulmonary TB
Activation of second
line of defence
Formation of
granuloma
Caused by bacilli M.
tuberculosis
Infection of lungs
Dormant form
Macrophage
inflammation
reactivation
3Central university of Punjab: HGMM1/29/2016
History and evidences of TB
susceptibility
• Disease first identified by Robert Koch in
1882
• In 1929, Lubeck , Germany a complete lot of
BCG vaccine was contaminated with M.
tuberculosis
• Vaccine injected in 251 infants
• 4 remained uninfected, 72 died within a year,
175 overcame
• 70% of naive babies survived the infection
Reference: Moller % Hoal; 2010
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Reference: Bellamy, 1998
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Epidemiology of the disease
• 1/3rd of world population is affected with this
infection
• But only 1/10th of this develops the active
form of the disease
• 10 million of US population is infected with
this infection
• Amongst top 3 causes of death in India and
2/3rd of all the cases in India are from
underprivileged groups and out of this 36%
new cases are from immigrants
6Central university of Punjab: HGMM1/29/2016
Reference: (Moller andHoal, 2010; Swaminathanand Rekha, 2010)
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Figure 3(a). Pie chart showing the
incidences of TB in the year 2012
worldwide
(Source: Global
Tuberculosis report, 2013)
Figure 1. Incidence rate map of the disease in the year 2012 worldwide
(Source: www.cdc.gov; 2012)
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Figure 2. Pie chart showing the incidences of TB in the year 2012 worldwide
(Source: Global Tuberculosis report, 2013)
Interaction between human and M.
tuberculosis
Pathogen Associated Molecular Patterns interacting with
Pattern Recognition Receptors' for example Toll Like
Receptors and Non- Toll like receptors (mannose binding
receptors, lipopolysaccharide binding receptors)
Cascade of reactions get activated
Cytokines example Tnfα/ IL 12/ IL 1 are secreted
These cytokines activate second line of defence
Phagocytosis/ apoptosis/ opsonisation/ inflammation
Source:www.docmeg.wordpress.com,2011
Central university of Punjab: HGMM1/29/2016
Source: www.newint.org,2013
www.cdc.org, 2004
Growth of bacterium inside the host
• The bacterium is unique in having lipid cell
wall composition more than peptidoglycan
• Mycolic acid (alpha branched lipids)
• Cord factors (trehalose mycolate)
• Wax-D (peptido-glycolipid)
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Reference: Meena ET al., 2012
Survival mechanism adapted by
M. tuberculosis
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Figure3. Key survival
mechanisms involved in
phagosome maturation arrest of
M. tuberculosis inside the
macrophages
(Source: Meena et al., 2012)
Some of the Pathogen genes
interacting with host
Gene Function
Erp gene Encodes exported repetitive proteins, these surface proteins
function in virulence
Mas gene Marker assisted selection, encodes mycoserosic acid synthase
that catalyses the synthesis of mycoserosic acids that helps
in protection against macrophages
Fbp A Fibronectin binding protein A, encodes mycolyl transferase
enzyme that helps in growth of bacteria
Omp A Outer membrane protein A precursor, porin like proteins
forms pores in liposomes of host
Hbh A Encodes Heparin binding hemagglutinin protein , binds heparin
and
promotes hemagglutination, this helps in invading the host
defence mechanism
Lam Laminin encoding genes, laminin depress IFNγ production
Host susceptibility mechanisms
• Upon infection there are chances that the
host can either develop or resist the
disease
• Based on expression of resistance and
susceptibility genes
• These genes majorly grouped into two
types HLA and Non HLA genes
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This association can be well
understood by below three
hypothesis
• Hypothesis I
Hypothesis I
HLA Antigen is
getting influenced by
the bacterium M.
tuberculosis and
doing its molecular
mimicry.
HLA antigens act as
receptors for the
bacterium M. tuberculosis.
HLA antigens are
involved in weakening
the immune
responses.
reference: selvaraj, 2004
14Central university of Punjab: HGMM1/29/2016
Hypothesis II :
MHC genes are present in closer proximity to
genes that are involved in susceptibility.
Hypothesis III:
Non-HLA genes are involved.
reference: Selvaraj, 2004
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Classification of susceptibility
genes
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(A).HLA and
Non HLA gene
type
(B). Genes
involved in
various
immunological
processes
(A). HLA and Non HLA gene
HLA genes
• An increased antigen
recognition range by
different polymorphic
forms is seen
• to antigen specificity
• Susceptibility allele
example: HLADRB1 to
HLADRB14
• In Chinese and Kazak
population: HLADQB1
and HLADRB1 genetic
polymorphismsreference:Khalilullah et al., 2014)
Non HLA genes
• Genes other than HLA
are responsible for
susceptibility
• Haptoglobulin genes
polymorphism
• Three polymorphic forms
of genes:HP1-1; HP2-1;
HP2-2
• HP1-1 is most effective
;HP2-1 is moderately
active while HP2-2 is
Least active
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Therefore, the polymorphic form HP2-2 of haptoglobin gene is
responsible for more lymphocytes and this form supports TB
resistance
Hence, lesser immunosupression via Haptoglobin genes and more
inflammatory response by lymphocytes on haemaglobin
Individuals with lesser number of least active form of haptoglobin i.e.
HP2-2 phenotype were found to be active for more lymphocytic
activation and recruitment
Non- HLA genes polymorphism: Example haptoglobin gene
polymorphism {its polymorphic forms are HP1-1; HP2-1; HP2-2}
(B). Genes involved immunological
processes
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Transport
er genes
Receptor
encoding
genes
Genes
involved
in
bacterial
killing
Genes
involved
in
apoptosis
of I C
Chemoki
ne
encoding
genes
Cytokine
encoding
genes
Genes
involved
in A P
Genes
involved in
OP of M.
tuberculosi
s
Reference: Moller and Hoal, 2010
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Figure4. Various genes involved in susceptibility mechanism
(source: Moller and Hoal,
2010)
Genes involved in antigen
presentation
Type Human leukocyte antigen
Gene name HLA DR, HLA DQ, HLA DP, HLA DM, HLA
DOA, HLA DOB
present on MHCII
HLA A, HLA B and HLA C present on MHCI
Chromosomal location Chromosome 6 , both short and long arms
Function - Encodes cell surface antigen presenting proteins
- MHC I , HLA genes present antigens to CD8+, Cytotoxic T cells and present antigens
from inside the cell
- MHC II, HLA genes present antigens to CD4+, helper T cells and present antigens from
outside the cell
Effect Increased expression of the mutant form or recessive polymorphic form of allele results in
higher susceptibility levels or less expression of wild type allele leads to susceptibility
Polymorphic form/forms HLA DR2
Subtype
-DRB1*1501*1502
-DRB1*0601
HLA DQ1
-DQB1*0601
HLA DP
-DPB1*02
Haplotype
-DRB1 and 1501-DQB1*0601
-DRB1*11, DBB1*10, DQB1*0501
Epidemiological studies Except Haplotype –DRB1*11, DRB1*10, DQB1*0501 leads to resistance, all other
polymorphisms are responsible for susceptibility amongst Indian population studies
References (Kindt et al., 2007 ; Moller and Hoal, 2010; Balamurugan et al.,2004)
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Type Non classical HLA
Gene name Tap2 and Tap1
Chromosomal location 6q;(between HLA DQ and HLA DP)
Function - These genes encode transporter associated proteins
- These proteins present antigens to CD8+, Cytotoxic T cells i.e. help in
cellular mediated immune responses
- The polymorphic residues of these genes provide specificity in antigen
presentation
Effect Increased expression of the mutant form or recessive polymorphic form of allele
results in higher susceptibility levels or less expression of wild type allele leads
to susceptibility
Polymorphic form/forms Tap1 -rs1135216A/G
Tap2 -rs241447
Epidemiological studies -rs241447 Decrease risk of TB in Iranian
population studies
-rs1135216A/G In Iranian population homozygote GG
and heterozygote AG increased the risk
of TB as compared to homozygote AA
References (Kindt et al.,2007 ; Naderi et al., 2015)
Cytokine encoding genes
23Central university of Punjab: HGMM1/29/2016
Type Non-HLA genes
Gene name IFNG
Chromosomal location 12q and 10q
Function - It encodes cytokine Interferon-γ , that activates macrophages and is produced by T-cells
- It also helps in antigen presentation to CD8+, Cytotoxic T cells
Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher
susceptibility levels or less expression of wild type allele leads to susceptibility
Polymorphic
form/forms
IFNG+874(A/T) polymorphism of Intron region
Haplotype- TA, TC, CC
Epidemiological studies - +874(A/T) polymorphism is seen to be responsible for susceptibility in Pakistan, China,
Hong Kong, Sicilian, South Africa; but no association of this SNP is seen in Malawian,
Houston, West Africa, South Indian and Croatian population
- +874 A is responsible for susceptibility while +874 T is responsible for protection against TB
- Polymorphism -56(CC) in promoter and -56(CA) in Intron region are responsible for
susceptibility
- In case of Haplotype – over expression of TA in North Indians is responsible for
susceptibility
References (Kindt et al., 2007; Abhimanyu et al., 2012; Moller andHoal, 2010;
Khalilullah et al., 2014)
Type Non-HLA genes
Gene name IL12B, IL1B, IL1RA, IL6, IL10
Chromosomal location IL12B 5q
IL1B 2q
IL1RA 2q
IL6 7p
IL10 1q
Function IL12B - Encodes cytokine Interleukin12-β that is produced by activated macrophages, monocytes, B lymphocytes and
dendritic cells
- This molecule helps in inducing, maintaining the number and memory of Helper T cells
IL1B - It encodes cytokine Interleukin1β that is a pro-inflammatory molecule and is produced by monocytes,
macrophages, dendritic cells
- Its level increases during defence mechanism
IL1RA - It encodes cytokines IL1μ and IL1β
- It helps in inhibition of IL1 activity on T cells, therefore act as anti-inflammatory cytokine
IL6 - It is expressed in hepatocytes, monocytes, B cell lymphocytes, macrophages and neutrophils as a anti
inflammatory cytokine
- Expression blocks the IFNγ mediated signalling
- It is also involved in macrophage and cytotoxic T cell differentiation it also induces IL-4 production
- Higher levels of IL-6 are involved in resistance
IL10 - It expressed cytokine has anti-inflammatory properties
- The cytokine acts as an antagonist (i.e. opposes) Tnf-α, Ifn-γ and IL-12B production as they are the cytokines
that lead to inflammation
- It is produced after the M. tuberculosis bacterium has been phagocytosed via monocytes, macrophages and
T-lymphocytes
Effect The over expression of IL6, IL1RA and IL10 leads to susceptibility while others are responsible for susceptibility in cases of
less expression
Polymorphic
form/forms
IL10 -1082(G/A) and -592(A/C)(both in promoter region)
-2849A, -819C
IL6 -572C>G, -572(GG)
Epidemiological studies -1082(G/A) and -592(A/C)(both in
promoter region)
-1082A is seen to be responsible for susceptibility in Ghana
-2849A, -819C -2849A is susceptible in Ghana
-572C>T, -572(GG) In Ugandan population SNP-572C>T leads to resistance against TB while SNP-
572GG protects TB by IL-6 production
References (Kindt et al., 2007; Abhimanyu et al., 2012; Santos et al., 2002;
Acton et al., 2013; Khalilullah et al., 2014)
Type Non HLA genes
Gene name TNFA
Chromosomal
location
6p
Function - It encodes cytokine Tumor necrosis factor-α , which is produced
mainly by monocytes and macrophages
- Tnfα also signals these cells to enter the pulmonary system
- It promotes the granuloma formation i.e. inactive form of TB
Effect Increased expression of the mutant form or recessive polymorphic form
of allele results in higher susceptibility levels or less expression of wild
type allele leads to susceptibility
Polymorphic
form/forms
−1031 (T/C), −863 (C/A), −857 (C/T), −308 (G/A), −238 (G/A), −1196
(C/T), −1125 (G/C), −572 (A/C), −316 (G/A), −163 (G/A), and −70
(G/A)
Epidemiological
studies
- -238(G/A) polymorphism is common in many countries
- -238(G/G) polymorphism leads to resistance for the disease
- -857(C/T) polymorphism is responsible for increase in susceptibility
as seen in Iran linkage studies
References (Selvaraj, 2004; Santos et al., 2002; Abhimanyu et al., 2012;
Khalilullah et al., 2014)
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Chemokine encoding genes
Type Non-HLA genes
Gene name CCL2
Chromosomal
location
17q
Function The expression of this gene leads to the formation of monocyte chemoattractant
proteins(MCP)
Effect Increased expression of the mutant form or recessive polymorphic form of allele
results in higher susceptibility levels or less expression of wild type allele leads to
susceptibility
Polymorphic
form/forms
-2518(A/G) in promoter region
Epidemiological
studies
- -2518(A/G) has been studied as candidate susceptibility gene in Ghana
- -2518A is associated with low MCP production leading to susceptibility for TB
as seen in Mexican, Korean, Chinese and Peruvian population studies
- -2518G is associated with high MCP production leading to resistance
- No association of this polymorphism was found with TB in South Indians,
Coloreds and Ghanians
References (Raja,2004; Khalilullah et al., 2014)
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Metal ion transporter associated
genes
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NRAMP1expression
Bactericidal effects
Antiports iron bivalent cation
This cation localizes to the membrane of
late endosomes or lysosomes
This makes the phagosomal environment
acidic
Killing M. tuberculosis
Type Non-HLA genes
Gene name NRAMP1/ SLC11A1
Chromosomal location 2q
Function - It encodes Natural resistance associated macrophage protein which acts as
antiporter or transporter
- This protein is expressed inside the macrophages which has bactericidal
effects
Effect Increased expression of the mutant form or recessive polymorphic form of allele
results in higher susceptibility levels or less expression of wild type allele leads
to susceptibility
Polymorphic
form/forms
3’UTR, D543N, 5’(GT)n and INT4
-rs3731865, -rs17221959, -rs3731863
Epidemiological
studies
INT4 and D543N - Responsible for more TB
susceptibility in Chinese
population
- In Indonasian population , no
association seen between D543N,
INT4 and TB susceptibility
-rs3731865, -rs17221959, -rs3731863 - Responsible for susceptibility in
US(Caucasians and African
Americans)
References ( Moller and Hoal, 2010; Kozakiewicz, et.al., 2013; Khalilullah et al., 2014)
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Receptor encoding genes
Type Non-HLA genes
Gene name CD209
Chromosomal
location
19p
Function - These encode the surface molecules that provide the targets for antigen
presentation on T cells
- These surface molecules are transmembrane protein predominantly expressed on
dendritic cells, whereas its presence on macrophages depends on the tissue type
and state of activation.
- It is induced in alveolar macrophages from M. tuberculosis infected patients. It
directly mediates phagocytosis of M. tuberculosis by dendritic cells.
Effect Increased expression of the mutant form or recessive polymorphic form of allele results
in higher susceptibility levels or less expression of wild type allele leads to
susceptibility
Polymorphic
form/forms
-871
Epidemiological
studies
This polymorphic form has been studied as candidate susceptibility gene in South
Africa
References (Khalilullah et al., 2014; Moller and Hoal ,2010)
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Type Non-HLA genes
Gene name VDR
Chromosomal location 12q
Function - Enhances phagosomal activity of the cell
Effect Increased expression of the mutant form or recessive polymorphic form of allele
results in higher susceptibility levels or less expression of wild type allele leads to
susceptibility
Polymorphic form/forms Variants Taq1(TT, Tt, tt), Apal(AA,Aa,aa), Bsml(BB, Bb, bb) and Fokl(FF, Ff, ff)
Epidemiological studies Fokl(FF, Ff, ff) - In Indonasian, Asian and Chinese
population (FF) Fokl variant was
expressed more in TB patients while
levels of other variants didnot more
differ within the groups
Bsml(BB, Bb, bb) - In Turkey, Bsml(BB) is associted
more with TB susceptibility
Apal(AA,Aa,aa) - Apal in West African candidate gene
susceptibility studies
Taq1(TT, Tt, tt) - No association was seen for VDR
polymorphism in African and
American population
References (Zhabagin et al., 2013 ; Moller and Hoal, 2010; Khalilullah et al., 2014;
Gao et al, 2010; Bornman et al., 2004)
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Type Non-HLA genes
Gene name TLR2
TLR9
Chromosomal location TLR2 4q
TLR9 3p
Function These encode proteins that binds to PAMP’s
Effect Increased expression of the mutant form or recessive polymorphic form of allele
results in higher susceptibility levels or less expression of wild type allele leads
to susceptibility
Polymorphic form/forms TLR2 R753Q(exon),R677(exon), -597(T/C)
and P631H
Insertion/ Deletion (-196 to -174)
TLR9 -rs352143
Epidemiological studies R753Q(exon),R677(exon), -597(T/C), -
975(C/T) and P631H
- -597(T/C) responsible for more
susceptibility for the disease in
children
- -P631H expressed more in
Croatian Caucasian TB patients
- -975(C/T) polymorphism is
responsible for resistance in
against TB in Korean population
studies
Insertion/ Deletion (-196 to -174) Susceptibility in Guinea-Bissau and
US (Caucasians) population for this
polymorphism is seen
-rs352143 Susceptibility in US(African American)
population for this polymorphism is
reported
References (Khalilullah et al., 2014; Moller and Hoal, 2010)
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Genes involved in bacterial killing
Type Non-HLA genes
Gene name NOS2A/ iNOS
Chromosomal location 17q
Function Enzyme encoded by this gene is present in cytosol(nitric oxide synthase)
This enzyme catalyzes the production of nitric oxide
Effect Increased expression of the mutant form or recessive polymorphic form of allele results in
higher susceptibility levels or less expression of wild type allele leads to susceptibility
Polymorphic form/forms -CCTTT
-TAAA
-rs9282799, -rs8078340
-rs2274894
Epidemiological studies -CCTTT High frequency in TB patients in North
Western and Colombian population
-TAAA No association was seen with this
polymorphism
-rs9282799, -rs8078340 Candidate susceptibility gene studied in
South Africa
-rs2274894 Candidate susceptibility gene studied in US(
African American)
References (Khalilullah et al., 2014; Moller and Hoal, 2010)
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Genes involved in apoptosis of
infected macrophage
Type Non-HLA gene
Gene name SP110
Chromosomal location 2q
Function - It encodes speckled proteins that are nuclear body proteins
- These proteins are responsible for apoptosis of infected macrophages
- This process is induced by IFNG signals
Effect Increased expression of the mutant form or recessive polymorphic form of
allele results in higher susceptibility levels or less expression of wild type allele
leads to susceptibility
Polymorphic
form/forms
-rs3948464
-rs2114592
Epidemiological
studies
-rs3948464 -susceptibility in Ghambian population
-rs2114592 -susceptibility in republic of Guinea
and Gambia
References (Khalilullah et al., 2014; Moller and Hoal, 2010 )
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Genes involved in opsonisation of
M. tuberculosisType Non-HLA genes
Gene name MBL
Chromosomal location 10q
Function - It encodes mannose binding protein(secreted by liver), which binds to
mannose and N-acetylglucosamine
- This is further followed by lysis of the cell wall of M. tuberculosis by MAC
formation
- If MBL is in lesser amounts, the macrophage interacts with the bacilli directly
- This interaction leads to opsonisation and phagocytosis
Effect Lesser expression of this gene leads to resistance for the host due to direct
opsonisation by macrophages(i.e. without going to complement pathway)
Polymorphic form/forms Allele B Mutation in codon 54
Allele C Mutation in codon 57
Allele D Mutation in codon 52
Epidemiological studies These variants are associated with resistance to TB in Ghana
References (Kindt et al., 2007;Acton, 2013; Kozakiewicz et al., 2013;
Khalilullah et al., 2014; Soborg et al., 2003; Moller and Hoal, 2010 )
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(Source: Soborg et al., 2003)
Figure5. Interaction of MBL and pathogen
A. B.
C.
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Applications of studying the
susceptibility genes
Identification of susceptible genes will help
in:
Disease treatment:
Identification will put forward the
susceptibility genes responsible
Protein responsible is identified
Biochemical pathway, Cytokines,
and all the steps can be studied
Gene targeting can be done
37
Central university of Punjab: HGMM
1/29/2016
Genetic testing:
Development of new vaccines: These
studies has revealed majorly the
involvement of Non-HLA genes
• Development of new vaccines as the
targets become more vast
• But this application is still in its infancy
By identification of the gene responsible
population at risk can be identified
Genetic therapy can be processed
Most possible application
38Central university of Punjab: HGMM1/29/2016
Prevention, Diagnosis and
Treatment of Tuberculosis
Prevention of TB
• BCG(Bacillus of Calmette and Guerin) vaccine:
named after two Frenchmen who developed it
• It consists of live attenuated strain(virulent part
removed) of M. bovis (avirulent)
• Drawbacks:
 TB reactivation cannot be prevented
 It prevents the disease formation but not the
infection
 Complicates the way TST operates
 banned in U.S.
39Central university of Punjab: HGMM1/29/2016
Diagnostics of TB
• Ziehl neelson method:
Sputum(coughed up saliva) taken
Treated with NaOH(except M. tuberculosis other pathogens get killed)
Cultured on BACTEC media (Becton Dickinson) , it contains radiolabelled
palmitate as a sole carbon source
As the bacterium divides , palmitate divides liberating radiolabelled carbon
dioxide
Which detects growth within 9-16 days
40Central university of Punjab: HGMM1/29/2016
Mantoux test/ Tuberculin skin test/
PPD(purified protein derivative)
If there susceptibility or the person had been exposed earlier or if the person is
infected, then the antigen will react and develop red burn mark leading to
inflammation, within 3 days
done via placing the little amount of TB antigen under the inner top layer of the
forearm skin
Tuberculin skin test is the type of TB susceptibility test that identifies the levels of
susceptibility to TB
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• Treatment of TB: Common TB drugs are:
• Moxifloxacin is a fluroquinolone antibiotic drug that
targets DNA gyrase and kills bacteria by interfering
with its replication process. This drug showed
huge potency against TB than other TB drugs.
This drug can shorter the treatment from 6 months
to 3-4 months
Drug Mode of action
Rifampicin inhibits bacterial RNA
polymerase
Isoniazid inhibits the synthesis of
mycolic acid
Ethambutol obstructs the formation of cell
wall
Streptomycin acts as a protein synthesis
inhibitor
42Central university of Punjab: HGMM1/29/2016
Conclusion
• Various number of susceptibility genes such
as HLA genes and Non-HLA genes and their
polymorphic forms responsible for the
Tuberculosis has been studied
• This gives a vast area of study for treatment
by targeting these genes
• But many genes are yet to be identified
• The challenges for study and treatment are
yet to overcome due to co evolution of the
bacterium and human both
Central university of Punjab: HGMM 431/29/2016
Future perspectives
• Challenges in TB susceptibility studies
- GWAS
• Human and M. tuberculosis co-evolution
• Schistosoma mansoni co-infection
increased M. tuberculosis susceptibility
• MicroRNA-223 in TB susceptibility
44Central university of Punjab: HGMM1/29/2016
References
• Abhimanyu, M. B., Jha, P., and Indian Genome Variation Consortium. (2012). Footprints of
genetic susceptibility to pulmonary tuberculosis: Cytokine gene variants in north Indians. The
Indian journal of medical research, 135(5), 763.
• Bellamy, R. (1998). Genetic susceptibility to tuberculosis in human populations. Thorax, 53(7),
588-593.
• Bornman, L., Campbell, S. J., Fielding, K., Bah, B., Sillah, J., Gustafson, and Sylla, A. (2004).
Vitamin D receptor polymorphisms and susceptibility to tuberculosis in West Africa: a case-control
and family study.Journal of Infectious Diseases, 190(9), 1631-1641.
• Dorhoi, A., Iannaccone, M., Farinacci, M., Faé, K. C., Schreiber, J., Moura-Alves, and Heinemann,
E. (2015). MicroRNA-223 controls susceptibility to tuberculosis by regulating lung neutrophil
recruitment. The Journal of clinical investigation, 123(11), 4836.
• Dunn, P. L., and North, R. J. (1995). Virulence ranking of some Mycobacterium tuberculosis and
Mycobacterium bovis strains according to their ability to multiply in the lungs, induce lung
pathology, and cause mortality in mice.Infection and immunity, 63(9), 3428-3437.
• Gao, L., Tao, Y., Zhang, L., and Jin, Q. (2010). Vitamin D receptor genetic polymorphisms and
tuberculosis: updated systematic review and meta-analysis. The international journal of
tuberculosis and lung disease, 14(1), 15-23.
Central university of Punjab: HGMM 451/29/2016
• Khalilullah, S. A., Harapan, H., Hasan, N. A., Winardi, W., Ichsan, I., and Mulyadi, M. (2014). Host
genome polymorphisms and tuberculosis infection: What we have to say?. Egyptian Journal of Chest
Diseases and Tuberculosis, 63(1), 173-185.
• Meena, L. S. (2010). Survival mechanisms of pathogenic Mycobacterium tuberculosis H37Rv. FEBS
Journal, 277(11), 2416-2427.
• Moller, M., and Hoal, E. G. (2010). Current findings, challenges and novel approaches in human genetic
susceptibility to tuberculosis. Tuberculosis,90(2), 71-83.
• Monin, L., Griffiths, K. L., Lam, W. Y., Gopal, R., Kang, D. D., Ahmed and Kolls, J. K. (2015). Helminth-
induced arginase-1 exacerbates lung inflammation and disease severity in tuberculosis. The Journal of
clinical investigation, 125(12).
• Raja, A. (2004). Immunology of tuberculosis. Indian Journal of Medical Research, 120(Oct), 213-232.
• Santos, A. R., Suffys, P. N., Vanderborght, P. R., Moraes, M. O., Vieira, L. M., Cabello, P. H. and
Sampaio, E. P. (2002). Role of tumor necrosis factor–α and interleukin-10 promoter gene polymorphisms
in leprosy. Journal of Infectious Diseases, 186(11), 1687-1691.
• Selvaraj, (2004). Host genetics and tuberculosis susceptibility. Current Science, 86(1), 115-121.
• Soborg, C., Madsen, H. O., Andersen, Å. B., Lillebaek, T., Kok-Jensen, A., and Garred (2003). Mannose-
binding lectin polymorphisms in clinical tuberculosis. Journal of Infectious Diseases, 188(5), 777-782.
• Swaminathan and S.Rekha (2010). Pediatric tuberculosis: global overview and challenges. Clinical
Infectious Diseases, 50(3), 184-194.
• Zhabagin, M., Abilova, Z., Askapuli, A., Rakhimova, S., Kairov, U., Berikkhanova, and Akilzhanova,
(2014). Vitamin D Receptor Gene Polymorphisms in Susceptibility to Tuberculosis in the Kazakh
Population in Almaty and Almaty Area. Central Asian Journal of Global Health,66(2).
1/29/2016 Central university of Punjab: HGMM 46
1/29/2016 Central university of Punjab: HGMM 47
`
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Human genetic susceptibility to mycobacterium tuberculosis 1

  • 1. Human Genetic Susceptibility to M. tuberculosis Credit seminar 2nd semester Submitted by: Shweta kaul Master of life sciences with specialization in Human Genetics Registration number:15mslshg02 Centre of Human Genetics and Molecular Medicine School of Health Sciences Central university of Punjab, Bathinda, 151001 1/29/2016 1
  • 2. Tuberculosis  It is a contagious disease caused by the airborne bacterium M. tuberculosis  Infects primarily lungs causing primary infection  Pulmonary TB and Extra pulmonary TB  Spreads through lymph nodes and bloodstream to any organ of the body  Contagious as can spread through cough, sneeze, or speak  Person suffers cough, weight loss, loss of appetite, fever, coughing up blood and night sweats  Difference between active form of disease and infection of lungs  Touching someone who has disease does not necessarily spread the disease 1/29/2016 Central university of Punjab: HGMM 2
  • 3. Tuberculosis • Two stages – pulmonary TB and extra pulmonary TB(in very rare cases example in immunosuppressed individuals) Pulmonary TB Activation of second line of defence Formation of granuloma Caused by bacilli M. tuberculosis Infection of lungs Dormant form Macrophage inflammation reactivation 3Central university of Punjab: HGMM1/29/2016
  • 4. History and evidences of TB susceptibility • Disease first identified by Robert Koch in 1882 • In 1929, Lubeck , Germany a complete lot of BCG vaccine was contaminated with M. tuberculosis • Vaccine injected in 251 infants • 4 remained uninfected, 72 died within a year, 175 overcame • 70% of naive babies survived the infection Reference: Moller % Hoal; 2010 1/29/2016 Central university of Punjab: HGMM 4
  • 5. Reference: Bellamy, 1998 1/29/2016 5Central university of Punjab: HGMM
  • 6. Epidemiology of the disease • 1/3rd of world population is affected with this infection • But only 1/10th of this develops the active form of the disease • 10 million of US population is infected with this infection • Amongst top 3 causes of death in India and 2/3rd of all the cases in India are from underprivileged groups and out of this 36% new cases are from immigrants 6Central university of Punjab: HGMM1/29/2016 Reference: (Moller andHoal, 2010; Swaminathanand Rekha, 2010)
  • 7. 1/29/2016 Central university of Punjab: HGMM 7 Figure 3(a). Pie chart showing the incidences of TB in the year 2012 worldwide (Source: Global Tuberculosis report, 2013) Figure 1. Incidence rate map of the disease in the year 2012 worldwide (Source: www.cdc.gov; 2012)
  • 8. 1/29/2016 Central university of Punjab: HGMM 8 Figure 2. Pie chart showing the incidences of TB in the year 2012 worldwide (Source: Global Tuberculosis report, 2013)
  • 9. Interaction between human and M. tuberculosis Pathogen Associated Molecular Patterns interacting with Pattern Recognition Receptors' for example Toll Like Receptors and Non- Toll like receptors (mannose binding receptors, lipopolysaccharide binding receptors) Cascade of reactions get activated Cytokines example Tnfα/ IL 12/ IL 1 are secreted These cytokines activate second line of defence Phagocytosis/ apoptosis/ opsonisation/ inflammation Source:www.docmeg.wordpress.com,2011 Central university of Punjab: HGMM1/29/2016 Source: www.newint.org,2013 www.cdc.org, 2004
  • 10. Growth of bacterium inside the host • The bacterium is unique in having lipid cell wall composition more than peptidoglycan • Mycolic acid (alpha branched lipids) • Cord factors (trehalose mycolate) • Wax-D (peptido-glycolipid) 1/29/2016 Central university of Punjab: HGMM 10 Reference: Meena ET al., 2012
  • 11. Survival mechanism adapted by M. tuberculosis 1/29/2016 Central university of Punjab: HGMM 11 Figure3. Key survival mechanisms involved in phagosome maturation arrest of M. tuberculosis inside the macrophages (Source: Meena et al., 2012)
  • 12. Some of the Pathogen genes interacting with host Gene Function Erp gene Encodes exported repetitive proteins, these surface proteins function in virulence Mas gene Marker assisted selection, encodes mycoserosic acid synthase that catalyses the synthesis of mycoserosic acids that helps in protection against macrophages Fbp A Fibronectin binding protein A, encodes mycolyl transferase enzyme that helps in growth of bacteria Omp A Outer membrane protein A precursor, porin like proteins forms pores in liposomes of host Hbh A Encodes Heparin binding hemagglutinin protein , binds heparin and promotes hemagglutination, this helps in invading the host defence mechanism Lam Laminin encoding genes, laminin depress IFNγ production
  • 13. Host susceptibility mechanisms • Upon infection there are chances that the host can either develop or resist the disease • Based on expression of resistance and susceptibility genes • These genes majorly grouped into two types HLA and Non HLA genes 1/29/2016 Central university of Punjab: HGMM 13
  • 14. This association can be well understood by below three hypothesis • Hypothesis I Hypothesis I HLA Antigen is getting influenced by the bacterium M. tuberculosis and doing its molecular mimicry. HLA antigens act as receptors for the bacterium M. tuberculosis. HLA antigens are involved in weakening the immune responses. reference: selvaraj, 2004 14Central university of Punjab: HGMM1/29/2016
  • 15. Hypothesis II : MHC genes are present in closer proximity to genes that are involved in susceptibility. Hypothesis III: Non-HLA genes are involved. reference: Selvaraj, 2004 1/29/2016 15Central university of Punjab: HGMM
  • 16. Classification of susceptibility genes 1/29/2016 Central university of Punjab: HGMM 16 (A).HLA and Non HLA gene type (B). Genes involved in various immunological processes
  • 17. (A). HLA and Non HLA gene HLA genes • An increased antigen recognition range by different polymorphic forms is seen • to antigen specificity • Susceptibility allele example: HLADRB1 to HLADRB14 • In Chinese and Kazak population: HLADQB1 and HLADRB1 genetic polymorphismsreference:Khalilullah et al., 2014) Non HLA genes • Genes other than HLA are responsible for susceptibility • Haptoglobulin genes polymorphism • Three polymorphic forms of genes:HP1-1; HP2-1; HP2-2 • HP1-1 is most effective ;HP2-1 is moderately active while HP2-2 is Least active 1/29/2016 Central university of Punjab: HGMM 17
  • 18. 1/29/2016 Central university of Punjab: HGMM 18 Therefore, the polymorphic form HP2-2 of haptoglobin gene is responsible for more lymphocytes and this form supports TB resistance Hence, lesser immunosupression via Haptoglobin genes and more inflammatory response by lymphocytes on haemaglobin Individuals with lesser number of least active form of haptoglobin i.e. HP2-2 phenotype were found to be active for more lymphocytic activation and recruitment Non- HLA genes polymorphism: Example haptoglobin gene polymorphism {its polymorphic forms are HP1-1; HP2-1; HP2-2}
  • 19. (B). Genes involved immunological processes 1/29/2016 Central university of Punjab: HGMM 19 Transport er genes Receptor encoding genes Genes involved in bacterial killing Genes involved in apoptosis of I C Chemoki ne encoding genes Cytokine encoding genes Genes involved in A P Genes involved in OP of M. tuberculosi s Reference: Moller and Hoal, 2010
  • 20. 1/29/2016 Central university of Punjab: HGMM 20 Figure4. Various genes involved in susceptibility mechanism (source: Moller and Hoal, 2010)
  • 21. Genes involved in antigen presentation Type Human leukocyte antigen Gene name HLA DR, HLA DQ, HLA DP, HLA DM, HLA DOA, HLA DOB present on MHCII HLA A, HLA B and HLA C present on MHCI Chromosomal location Chromosome 6 , both short and long arms Function - Encodes cell surface antigen presenting proteins - MHC I , HLA genes present antigens to CD8+, Cytotoxic T cells and present antigens from inside the cell - MHC II, HLA genes present antigens to CD4+, helper T cells and present antigens from outside the cell Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher susceptibility levels or less expression of wild type allele leads to susceptibility Polymorphic form/forms HLA DR2 Subtype -DRB1*1501*1502 -DRB1*0601 HLA DQ1 -DQB1*0601 HLA DP -DPB1*02 Haplotype -DRB1 and 1501-DQB1*0601 -DRB1*11, DBB1*10, DQB1*0501 Epidemiological studies Except Haplotype –DRB1*11, DRB1*10, DQB1*0501 leads to resistance, all other polymorphisms are responsible for susceptibility amongst Indian population studies References (Kindt et al., 2007 ; Moller and Hoal, 2010; Balamurugan et al.,2004)
  • 22. 1/29/2016 Central university of Punjab: HGMM 22 Type Non classical HLA Gene name Tap2 and Tap1 Chromosomal location 6q;(between HLA DQ and HLA DP) Function - These genes encode transporter associated proteins - These proteins present antigens to CD8+, Cytotoxic T cells i.e. help in cellular mediated immune responses - The polymorphic residues of these genes provide specificity in antigen presentation Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher susceptibility levels or less expression of wild type allele leads to susceptibility Polymorphic form/forms Tap1 -rs1135216A/G Tap2 -rs241447 Epidemiological studies -rs241447 Decrease risk of TB in Iranian population studies -rs1135216A/G In Iranian population homozygote GG and heterozygote AG increased the risk of TB as compared to homozygote AA References (Kindt et al.,2007 ; Naderi et al., 2015)
  • 23. Cytokine encoding genes 23Central university of Punjab: HGMM1/29/2016 Type Non-HLA genes Gene name IFNG Chromosomal location 12q and 10q Function - It encodes cytokine Interferon-γ , that activates macrophages and is produced by T-cells - It also helps in antigen presentation to CD8+, Cytotoxic T cells Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher susceptibility levels or less expression of wild type allele leads to susceptibility Polymorphic form/forms IFNG+874(A/T) polymorphism of Intron region Haplotype- TA, TC, CC Epidemiological studies - +874(A/T) polymorphism is seen to be responsible for susceptibility in Pakistan, China, Hong Kong, Sicilian, South Africa; but no association of this SNP is seen in Malawian, Houston, West Africa, South Indian and Croatian population - +874 A is responsible for susceptibility while +874 T is responsible for protection against TB - Polymorphism -56(CC) in promoter and -56(CA) in Intron region are responsible for susceptibility - In case of Haplotype – over expression of TA in North Indians is responsible for susceptibility References (Kindt et al., 2007; Abhimanyu et al., 2012; Moller andHoal, 2010; Khalilullah et al., 2014)
  • 24. Type Non-HLA genes Gene name IL12B, IL1B, IL1RA, IL6, IL10 Chromosomal location IL12B 5q IL1B 2q IL1RA 2q IL6 7p IL10 1q Function IL12B - Encodes cytokine Interleukin12-β that is produced by activated macrophages, monocytes, B lymphocytes and dendritic cells - This molecule helps in inducing, maintaining the number and memory of Helper T cells IL1B - It encodes cytokine Interleukin1β that is a pro-inflammatory molecule and is produced by monocytes, macrophages, dendritic cells - Its level increases during defence mechanism IL1RA - It encodes cytokines IL1μ and IL1β - It helps in inhibition of IL1 activity on T cells, therefore act as anti-inflammatory cytokine IL6 - It is expressed in hepatocytes, monocytes, B cell lymphocytes, macrophages and neutrophils as a anti inflammatory cytokine - Expression blocks the IFNγ mediated signalling - It is also involved in macrophage and cytotoxic T cell differentiation it also induces IL-4 production - Higher levels of IL-6 are involved in resistance IL10 - It expressed cytokine has anti-inflammatory properties - The cytokine acts as an antagonist (i.e. opposes) Tnf-α, Ifn-γ and IL-12B production as they are the cytokines that lead to inflammation - It is produced after the M. tuberculosis bacterium has been phagocytosed via monocytes, macrophages and T-lymphocytes Effect The over expression of IL6, IL1RA and IL10 leads to susceptibility while others are responsible for susceptibility in cases of less expression Polymorphic form/forms IL10 -1082(G/A) and -592(A/C)(both in promoter region) -2849A, -819C IL6 -572C>G, -572(GG) Epidemiological studies -1082(G/A) and -592(A/C)(both in promoter region) -1082A is seen to be responsible for susceptibility in Ghana -2849A, -819C -2849A is susceptible in Ghana -572C>T, -572(GG) In Ugandan population SNP-572C>T leads to resistance against TB while SNP- 572GG protects TB by IL-6 production References (Kindt et al., 2007; Abhimanyu et al., 2012; Santos et al., 2002; Acton et al., 2013; Khalilullah et al., 2014)
  • 25. Type Non HLA genes Gene name TNFA Chromosomal location 6p Function - It encodes cytokine Tumor necrosis factor-α , which is produced mainly by monocytes and macrophages - Tnfα also signals these cells to enter the pulmonary system - It promotes the granuloma formation i.e. inactive form of TB Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher susceptibility levels or less expression of wild type allele leads to susceptibility Polymorphic form/forms −1031 (T/C), −863 (C/A), −857 (C/T), −308 (G/A), −238 (G/A), −1196 (C/T), −1125 (G/C), −572 (A/C), −316 (G/A), −163 (G/A), and −70 (G/A) Epidemiological studies - -238(G/A) polymorphism is common in many countries - -238(G/G) polymorphism leads to resistance for the disease - -857(C/T) polymorphism is responsible for increase in susceptibility as seen in Iran linkage studies References (Selvaraj, 2004; Santos et al., 2002; Abhimanyu et al., 2012; Khalilullah et al., 2014) 1/29/2016 Central university of Punjab: HGMM 25
  • 26. Chemokine encoding genes Type Non-HLA genes Gene name CCL2 Chromosomal location 17q Function The expression of this gene leads to the formation of monocyte chemoattractant proteins(MCP) Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher susceptibility levels or less expression of wild type allele leads to susceptibility Polymorphic form/forms -2518(A/G) in promoter region Epidemiological studies - -2518(A/G) has been studied as candidate susceptibility gene in Ghana - -2518A is associated with low MCP production leading to susceptibility for TB as seen in Mexican, Korean, Chinese and Peruvian population studies - -2518G is associated with high MCP production leading to resistance - No association of this polymorphism was found with TB in South Indians, Coloreds and Ghanians References (Raja,2004; Khalilullah et al., 2014) 1/29/2016 Central university of Punjab: HGMM 26
  • 27. Metal ion transporter associated genes 1/29/2016 Central university of Punjab: HGMM 27 NRAMP1expression Bactericidal effects Antiports iron bivalent cation This cation localizes to the membrane of late endosomes or lysosomes This makes the phagosomal environment acidic Killing M. tuberculosis
  • 28. Type Non-HLA genes Gene name NRAMP1/ SLC11A1 Chromosomal location 2q Function - It encodes Natural resistance associated macrophage protein which acts as antiporter or transporter - This protein is expressed inside the macrophages which has bactericidal effects Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher susceptibility levels or less expression of wild type allele leads to susceptibility Polymorphic form/forms 3’UTR, D543N, 5’(GT)n and INT4 -rs3731865, -rs17221959, -rs3731863 Epidemiological studies INT4 and D543N - Responsible for more TB susceptibility in Chinese population - In Indonasian population , no association seen between D543N, INT4 and TB susceptibility -rs3731865, -rs17221959, -rs3731863 - Responsible for susceptibility in US(Caucasians and African Americans) References ( Moller and Hoal, 2010; Kozakiewicz, et.al., 2013; Khalilullah et al., 2014) 1/29/2016 Central university of Punjab: HGMM 28
  • 29. Receptor encoding genes Type Non-HLA genes Gene name CD209 Chromosomal location 19p Function - These encode the surface molecules that provide the targets for antigen presentation on T cells - These surface molecules are transmembrane protein predominantly expressed on dendritic cells, whereas its presence on macrophages depends on the tissue type and state of activation. - It is induced in alveolar macrophages from M. tuberculosis infected patients. It directly mediates phagocytosis of M. tuberculosis by dendritic cells. Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher susceptibility levels or less expression of wild type allele leads to susceptibility Polymorphic form/forms -871 Epidemiological studies This polymorphic form has been studied as candidate susceptibility gene in South Africa References (Khalilullah et al., 2014; Moller and Hoal ,2010) 1/29/2016 Central university of Punjab: HGMM 29
  • 30. Type Non-HLA genes Gene name VDR Chromosomal location 12q Function - Enhances phagosomal activity of the cell Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher susceptibility levels or less expression of wild type allele leads to susceptibility Polymorphic form/forms Variants Taq1(TT, Tt, tt), Apal(AA,Aa,aa), Bsml(BB, Bb, bb) and Fokl(FF, Ff, ff) Epidemiological studies Fokl(FF, Ff, ff) - In Indonasian, Asian and Chinese population (FF) Fokl variant was expressed more in TB patients while levels of other variants didnot more differ within the groups Bsml(BB, Bb, bb) - In Turkey, Bsml(BB) is associted more with TB susceptibility Apal(AA,Aa,aa) - Apal in West African candidate gene susceptibility studies Taq1(TT, Tt, tt) - No association was seen for VDR polymorphism in African and American population References (Zhabagin et al., 2013 ; Moller and Hoal, 2010; Khalilullah et al., 2014; Gao et al, 2010; Bornman et al., 2004) 1/29/2016 Central university of Punjab: HGMM 30
  • 31. Type Non-HLA genes Gene name TLR2 TLR9 Chromosomal location TLR2 4q TLR9 3p Function These encode proteins that binds to PAMP’s Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher susceptibility levels or less expression of wild type allele leads to susceptibility Polymorphic form/forms TLR2 R753Q(exon),R677(exon), -597(T/C) and P631H Insertion/ Deletion (-196 to -174) TLR9 -rs352143 Epidemiological studies R753Q(exon),R677(exon), -597(T/C), - 975(C/T) and P631H - -597(T/C) responsible for more susceptibility for the disease in children - -P631H expressed more in Croatian Caucasian TB patients - -975(C/T) polymorphism is responsible for resistance in against TB in Korean population studies Insertion/ Deletion (-196 to -174) Susceptibility in Guinea-Bissau and US (Caucasians) population for this polymorphism is seen -rs352143 Susceptibility in US(African American) population for this polymorphism is reported References (Khalilullah et al., 2014; Moller and Hoal, 2010) 1/29/2016 Central university of Punjab: HGMM 31
  • 32. Genes involved in bacterial killing Type Non-HLA genes Gene name NOS2A/ iNOS Chromosomal location 17q Function Enzyme encoded by this gene is present in cytosol(nitric oxide synthase) This enzyme catalyzes the production of nitric oxide Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher susceptibility levels or less expression of wild type allele leads to susceptibility Polymorphic form/forms -CCTTT -TAAA -rs9282799, -rs8078340 -rs2274894 Epidemiological studies -CCTTT High frequency in TB patients in North Western and Colombian population -TAAA No association was seen with this polymorphism -rs9282799, -rs8078340 Candidate susceptibility gene studied in South Africa -rs2274894 Candidate susceptibility gene studied in US( African American) References (Khalilullah et al., 2014; Moller and Hoal, 2010) 1/29/2016 Central university of Punjab: HGMM 32
  • 33. Genes involved in apoptosis of infected macrophage Type Non-HLA gene Gene name SP110 Chromosomal location 2q Function - It encodes speckled proteins that are nuclear body proteins - These proteins are responsible for apoptosis of infected macrophages - This process is induced by IFNG signals Effect Increased expression of the mutant form or recessive polymorphic form of allele results in higher susceptibility levels or less expression of wild type allele leads to susceptibility Polymorphic form/forms -rs3948464 -rs2114592 Epidemiological studies -rs3948464 -susceptibility in Ghambian population -rs2114592 -susceptibility in republic of Guinea and Gambia References (Khalilullah et al., 2014; Moller and Hoal, 2010 ) 1/29/2016 Central university of Punjab: HGMM 33
  • 34. Genes involved in opsonisation of M. tuberculosisType Non-HLA genes Gene name MBL Chromosomal location 10q Function - It encodes mannose binding protein(secreted by liver), which binds to mannose and N-acetylglucosamine - This is further followed by lysis of the cell wall of M. tuberculosis by MAC formation - If MBL is in lesser amounts, the macrophage interacts with the bacilli directly - This interaction leads to opsonisation and phagocytosis Effect Lesser expression of this gene leads to resistance for the host due to direct opsonisation by macrophages(i.e. without going to complement pathway) Polymorphic form/forms Allele B Mutation in codon 54 Allele C Mutation in codon 57 Allele D Mutation in codon 52 Epidemiological studies These variants are associated with resistance to TB in Ghana References (Kindt et al., 2007;Acton, 2013; Kozakiewicz et al., 2013; Khalilullah et al., 2014; Soborg et al., 2003; Moller and Hoal, 2010 ) 1/29/2016 Central university of Punjab: HGMM 34
  • 35. 1/29/2016 Central university of Punjab: HGMM 35 (Source: Soborg et al., 2003) Figure5. Interaction of MBL and pathogen A. B. C.
  • 36. 1/29/2016 Central university of Punjab: HGMM 36
  • 37. Applications of studying the susceptibility genes Identification of susceptible genes will help in: Disease treatment: Identification will put forward the susceptibility genes responsible Protein responsible is identified Biochemical pathway, Cytokines, and all the steps can be studied Gene targeting can be done 37 Central university of Punjab: HGMM 1/29/2016
  • 38. Genetic testing: Development of new vaccines: These studies has revealed majorly the involvement of Non-HLA genes • Development of new vaccines as the targets become more vast • But this application is still in its infancy By identification of the gene responsible population at risk can be identified Genetic therapy can be processed Most possible application 38Central university of Punjab: HGMM1/29/2016
  • 39. Prevention, Diagnosis and Treatment of Tuberculosis Prevention of TB • BCG(Bacillus of Calmette and Guerin) vaccine: named after two Frenchmen who developed it • It consists of live attenuated strain(virulent part removed) of M. bovis (avirulent) • Drawbacks:  TB reactivation cannot be prevented  It prevents the disease formation but not the infection  Complicates the way TST operates  banned in U.S. 39Central university of Punjab: HGMM1/29/2016
  • 40. Diagnostics of TB • Ziehl neelson method: Sputum(coughed up saliva) taken Treated with NaOH(except M. tuberculosis other pathogens get killed) Cultured on BACTEC media (Becton Dickinson) , it contains radiolabelled palmitate as a sole carbon source As the bacterium divides , palmitate divides liberating radiolabelled carbon dioxide Which detects growth within 9-16 days 40Central university of Punjab: HGMM1/29/2016
  • 41. Mantoux test/ Tuberculin skin test/ PPD(purified protein derivative) If there susceptibility or the person had been exposed earlier or if the person is infected, then the antigen will react and develop red burn mark leading to inflammation, within 3 days done via placing the little amount of TB antigen under the inner top layer of the forearm skin Tuberculin skin test is the type of TB susceptibility test that identifies the levels of susceptibility to TB 1/29/2016 Central university of Punjab: HGMM 41
  • 42. • Treatment of TB: Common TB drugs are: • Moxifloxacin is a fluroquinolone antibiotic drug that targets DNA gyrase and kills bacteria by interfering with its replication process. This drug showed huge potency against TB than other TB drugs. This drug can shorter the treatment from 6 months to 3-4 months Drug Mode of action Rifampicin inhibits bacterial RNA polymerase Isoniazid inhibits the synthesis of mycolic acid Ethambutol obstructs the formation of cell wall Streptomycin acts as a protein synthesis inhibitor 42Central university of Punjab: HGMM1/29/2016
  • 43. Conclusion • Various number of susceptibility genes such as HLA genes and Non-HLA genes and their polymorphic forms responsible for the Tuberculosis has been studied • This gives a vast area of study for treatment by targeting these genes • But many genes are yet to be identified • The challenges for study and treatment are yet to overcome due to co evolution of the bacterium and human both Central university of Punjab: HGMM 431/29/2016
  • 44. Future perspectives • Challenges in TB susceptibility studies - GWAS • Human and M. tuberculosis co-evolution • Schistosoma mansoni co-infection increased M. tuberculosis susceptibility • MicroRNA-223 in TB susceptibility 44Central university of Punjab: HGMM1/29/2016
  • 45. References • Abhimanyu, M. B., Jha, P., and Indian Genome Variation Consortium. (2012). Footprints of genetic susceptibility to pulmonary tuberculosis: Cytokine gene variants in north Indians. The Indian journal of medical research, 135(5), 763. • Bellamy, R. (1998). Genetic susceptibility to tuberculosis in human populations. Thorax, 53(7), 588-593. • Bornman, L., Campbell, S. J., Fielding, K., Bah, B., Sillah, J., Gustafson, and Sylla, A. (2004). Vitamin D receptor polymorphisms and susceptibility to tuberculosis in West Africa: a case-control and family study.Journal of Infectious Diseases, 190(9), 1631-1641. • Dorhoi, A., Iannaccone, M., Farinacci, M., Faé, K. C., Schreiber, J., Moura-Alves, and Heinemann, E. (2015). MicroRNA-223 controls susceptibility to tuberculosis by regulating lung neutrophil recruitment. The Journal of clinical investigation, 123(11), 4836. • Dunn, P. L., and North, R. J. (1995). Virulence ranking of some Mycobacterium tuberculosis and Mycobacterium bovis strains according to their ability to multiply in the lungs, induce lung pathology, and cause mortality in mice.Infection and immunity, 63(9), 3428-3437. • Gao, L., Tao, Y., Zhang, L., and Jin, Q. (2010). Vitamin D receptor genetic polymorphisms and tuberculosis: updated systematic review and meta-analysis. The international journal of tuberculosis and lung disease, 14(1), 15-23. Central university of Punjab: HGMM 451/29/2016
  • 46. • Khalilullah, S. A., Harapan, H., Hasan, N. A., Winardi, W., Ichsan, I., and Mulyadi, M. (2014). Host genome polymorphisms and tuberculosis infection: What we have to say?. Egyptian Journal of Chest Diseases and Tuberculosis, 63(1), 173-185. • Meena, L. S. (2010). Survival mechanisms of pathogenic Mycobacterium tuberculosis H37Rv. FEBS Journal, 277(11), 2416-2427. • Moller, M., and Hoal, E. G. (2010). Current findings, challenges and novel approaches in human genetic susceptibility to tuberculosis. Tuberculosis,90(2), 71-83. • Monin, L., Griffiths, K. L., Lam, W. Y., Gopal, R., Kang, D. D., Ahmed and Kolls, J. K. (2015). Helminth- induced arginase-1 exacerbates lung inflammation and disease severity in tuberculosis. The Journal of clinical investigation, 125(12). • Raja, A. (2004). Immunology of tuberculosis. Indian Journal of Medical Research, 120(Oct), 213-232. • Santos, A. R., Suffys, P. N., Vanderborght, P. R., Moraes, M. O., Vieira, L. M., Cabello, P. H. and Sampaio, E. P. (2002). Role of tumor necrosis factor–α and interleukin-10 promoter gene polymorphisms in leprosy. Journal of Infectious Diseases, 186(11), 1687-1691. • Selvaraj, (2004). Host genetics and tuberculosis susceptibility. Current Science, 86(1), 115-121. • Soborg, C., Madsen, H. O., Andersen, Å. B., Lillebaek, T., Kok-Jensen, A., and Garred (2003). Mannose- binding lectin polymorphisms in clinical tuberculosis. Journal of Infectious Diseases, 188(5), 777-782. • Swaminathan and S.Rekha (2010). Pediatric tuberculosis: global overview and challenges. Clinical Infectious Diseases, 50(3), 184-194. • Zhabagin, M., Abilova, Z., Askapuli, A., Rakhimova, S., Kairov, U., Berikkhanova, and Akilzhanova, (2014). Vitamin D Receptor Gene Polymorphisms in Susceptibility to Tuberculosis in the Kazakh Population in Almaty and Almaty Area. Central Asian Journal of Global Health,66(2). 1/29/2016 Central university of Punjab: HGMM 46
  • 47. 1/29/2016 Central university of Punjab: HGMM 47 ` Thanking you