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Swan Annotation Tool - Text Mining
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Paolo Ciccarese
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Swan Annotation Framework: running text mining services and curating the results.
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Swan Annotation Tool - Text Mining
1.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD SWAN Annotation Framework and Text Mining Services Paolo Ciccarese, PhD Oct 25, 2010 1 Mass General Hospital Harvard Medical School paolo.ciccarese@gmail.com
2.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD Running text mining services 2
3.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 3 – Loading a news
4.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 4 – Selecting one or more of the available text mining services
5.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 5 – Running the selected text mining services
6.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 6 – Display of the results
7.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 7 – List of the results in the summary panel
8.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 8 – Display of items in text through the summary panel
9.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 9 - Sets summary panel
10.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 10 – Display of all the items belonging to the selected set
11.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 11 – Curation of one annotation item
12.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 12 – The returned term is too broad
13.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 13 – Introducing a comment in the curation token
14.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 14 – Applying the curation token
15.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 15 – Another example of curation
16.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 16 – Another example of curation
17.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 17 – First term is an exact match
18.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD Extending the automatically generated set 18
19.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 19 – For adding annotation on the text span ‘APP’ it is necessary to select the text and…
20.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 20 - … attach the right term
21.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 21 – New annotation added to the NCBO result set
22.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 22 – Displaying the new annotation in context
23.
© Massachusetts General
Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 23 – Displaying all the items of the set