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BeSTGRID  overview and advances Developing NZ research infrastructure www.bestgrid.org twitter: @bestgrid Nick Jones Director, BeSTGRID Co-Director eResearch, Centre for eResearch University of Auckland [email_address]
eResearch: research “e”lectronic ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Doesn’t the Internet do this?
eResearch isn’t for everyone.. ,[object Object],[object Object],[object Object],[object Object]
“ BeSTGRID  aims to enhance e-Research capability in New Zealand by providing the  skill base  to help the various research disciplines engage with new eResearch services” “ BeSTGRID  aims to kick start  centralised infrastructure  with some capital investment at key institutions” BeSTGRID: since 2006
KAREN
Current Planned Identity provider Virtual Applications Computation Cluster Storage
 
Who uses our grid?
Successes: within NZ ,[object Object],[object Object],[object Object],[object Object],[object Object]
BeSTGRID: since 2006 “ BeSTGRID could well be New Zealand’s  earliest dedicated eResearch infrastructure providers  – even predating KAREN. Since 2006, BeSTGRID has been  delivering services and tools to support research and research collaboration  on shared data sets, and in accessing computational resources. ” KAREN hyphen Issue 09 September 2009
What did we learn? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
* VDT - OpenScienceGrid * Globus – Argonne * Shibboleth – Internet2 * iRODS – DICE / RENCI * Sakai – Sakai Foundation * OCI - NSF  * PRAGMA – UCSD * EVO – CalTech * AccessGrid - Argonne * GenePattern – MIT Broad * caBIG - NIH * UK eScience - JISC * eFramework – JISC Shibboleth – JISC, SWITCH SLCS - Switch Sakai - JISC * Grisu – ARCS * Confluence - Atlassian * NCRIS - DIISR * QFAB - QCIF
What did we learn? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
MoRST eResearch programme ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
BeSTGRID   2009 – 2011 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Compute and storage platforms Shared investment Heterogeneous architectures Grid Middleware Common across compute and storage platforms Provides simplified & secure access to job queues & data sharing Applications and tools Collaboration, Sharing Managed, secure, stable, reliable ‘ Science as a service’ Research communities Deep engagement to map problems onto HPC and Grid Governance / Priorities Responsive, focused, consultative by member institutions
 
 
 
 
Architecture Diagram Virtual Gateway  Machine 1 GT4, GRIDFTP, GridSphere etc…. Virtual Gateway  Machine 2 GT4, GRIDFTP, Grisu Server. Virtual Gateway  Machine 3 GLite etc…. Geo-Sciences Bio-Sciences Physics Institutional Setup: UoA, UC, MU (VMs same) Clusters Supercomputers Superclusters Certificate Authority  (APAC CA) Or Shibbolised MyProxy LRM LRM LRM
 
Impediments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Site admin Site admin Site admin Site admin Site admin Faculty IT Institution IT Technical Working Group Geoscience Leads eResearch Centres eResearch Centres eResearch Centres Bioscience Leads eResearch Centres Steering Committee Project Management
Take lead from community ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Case Study: Drug Discovery ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Molecular Docking & Scoring Molecules Shared Storage X ray crystallography Virtual servers Databases of Molecules 3D Docking libraries ,[object Object],[object Object],[object Object],[object Object],Data Storage Computation Grid Gene sequence DB Auckland Cancer Society Research Centre Jack Flanagan: Molecular Mechanics Maurice Wilkins Centre 3D Structure, Mechanics Dunbar Lab Shaun Lott: Biological Structure
Case Study: Genomics ,[object Object],[object Object],[object Object],[object Object],[object Object]
Identity Federation Virtual servers Databases ,[object Object],[object Object],[object Object],Data Storage Computation Grid Shared Storage Databases Data Mik Black, Otago Genomics processing pipeline NZ Genomics R, Java, custom codes Cris Print, Auckland
Bioscience projects ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Australia New Zealand Data Streaming Local Data NZ Antennas & DSP ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],VLBI – 1. Trickle back Data, Compute, Electronics anz ska eVLBI – 2. Real time Tread-P 40 – 80 MHz Post Processor Correlation Central Processing Facility Australian Antennas
Physics projects ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Data Sharing & Collaboration ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
 
Making use of  all that noise   Each seismometer pair  provides a seismic profile Seismographic Information Service Paul Grimwood
Tomography Sub-surface seismic velocity structure constructed from an analysis of the velocities at which waves of different pitches propagate
WS Data
Collaboration – What have we found useful? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
eScience Infrastructure ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],During the current planning and transition phase, this project is referred to as: National eScience Infrastructure (NeSI)
NZ eResearch Infrastructure
Aims ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Consumers Investors Procurement Planning Operational management Data& Grid middleware to manage access Outreach ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Services ,[object Object],[object Object],[object Object],[object Object],[object Object],Canterbury HPC ,[object Object],[object Object],[object Object],Auckland Cluster HPC NIWA ,[object Object],[object Object],[object Object],[object Object],[object Object],Cluster AgResearch Managed Access ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],How NeSI is comprised Legend Financial flows Access
1-2 months Begin process of funding agreement with MoRST CEO and VC  sign-off Sector MoRST & Govt e-Science Transition working group to agree and write a full investment case, business model and implementation plan. June  |  July  | August | September |  October | November  |  December  | Morsties contribute advice to full business plan development Analyse and negotiate support from Treasury, TEC, FRST Financials formatted by Geoff Palmer, MoRST Cabinet Paper To Minister 6/10 Cabinet Office and Committee 20/10 Approval $ Cabinet sits 17/11 for decision 20/11 Iterations of final business plan **  Sign off by wider stakeholder group ** Contract  $ Implementation Appropriation Cabinet Paper negotiated with govt agencies MoRST/Treasury Julie and Kathleen to prepare Cabinet Paper Preview to Minister
eResearch ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Data Storage  – single sites Data Fabric  – single fabric across multiple sites Data Transfer  – experience and variety of tools Computational Services  – multiple sites, accessible via command lines and graphical tools Web sites  – Wikis, file sharing, email lists (Sakai); Content Management (Drupal) Video Collaboration  – Desktop (EVO) avcc.karen.net.nz Identity Federation  – access shared services using existing logins – NZ Access Federation
eResearch ,[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object]
Thanks to all these people! ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Where shall we go, from here? www.bestgrid.org @bestgrid Nick Jones Director, BeSTGRID Co-Director eResearch, Centre for eResearch University of Auckland [email_address]

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BeSTGRID OpenGridForum 29 GIN session

  • 1. BeSTGRID overview and advances Developing NZ research infrastructure www.bestgrid.org twitter: @bestgrid Nick Jones Director, BeSTGRID Co-Director eResearch, Centre for eResearch University of Auckland [email_address]
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  • 5. “ BeSTGRID aims to enhance e-Research capability in New Zealand by providing the skill base to help the various research disciplines engage with new eResearch services” “ BeSTGRID aims to kick start centralised infrastructure with some capital investment at key institutions” BeSTGRID: since 2006
  • 7. Current Planned Identity provider Virtual Applications Computation Cluster Storage
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  • 9. Who uses our grid?
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  • 11. BeSTGRID: since 2006 “ BeSTGRID could well be New Zealand’s earliest dedicated eResearch infrastructure providers – even predating KAREN. Since 2006, BeSTGRID has been delivering services and tools to support research and research collaboration on shared data sets, and in accessing computational resources. ” KAREN hyphen Issue 09 September 2009
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  • 13. * VDT - OpenScienceGrid * Globus – Argonne * Shibboleth – Internet2 * iRODS – DICE / RENCI * Sakai – Sakai Foundation * OCI - NSF * PRAGMA – UCSD * EVO – CalTech * AccessGrid - Argonne * GenePattern – MIT Broad * caBIG - NIH * UK eScience - JISC * eFramework – JISC Shibboleth – JISC, SWITCH SLCS - Switch Sakai - JISC * Grisu – ARCS * Confluence - Atlassian * NCRIS - DIISR * QFAB - QCIF
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  • 17. Compute and storage platforms Shared investment Heterogeneous architectures Grid Middleware Common across compute and storage platforms Provides simplified & secure access to job queues & data sharing Applications and tools Collaboration, Sharing Managed, secure, stable, reliable ‘ Science as a service’ Research communities Deep engagement to map problems onto HPC and Grid Governance / Priorities Responsive, focused, consultative by member institutions
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  • 22. Architecture Diagram Virtual Gateway Machine 1 GT4, GRIDFTP, GridSphere etc…. Virtual Gateway Machine 2 GT4, GRIDFTP, Grisu Server. Virtual Gateway Machine 3 GLite etc…. Geo-Sciences Bio-Sciences Physics Institutional Setup: UoA, UC, MU (VMs same) Clusters Supercomputers Superclusters Certificate Authority (APAC CA) Or Shibbolised MyProxy LRM LRM LRM
  • 23.  
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  • 25. Site admin Site admin Site admin Site admin Site admin Faculty IT Institution IT Technical Working Group Geoscience Leads eResearch Centres eResearch Centres eResearch Centres Bioscience Leads eResearch Centres Steering Committee Project Management
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  • 37. Making use of all that noise Each seismometer pair provides a seismic profile Seismographic Information Service Paul Grimwood
  • 38. Tomography Sub-surface seismic velocity structure constructed from an analysis of the velocities at which waves of different pitches propagate
  • 40.
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  • 45. 1-2 months Begin process of funding agreement with MoRST CEO and VC sign-off Sector MoRST & Govt e-Science Transition working group to agree and write a full investment case, business model and implementation plan. June | July | August | September | October | November | December | Morsties contribute advice to full business plan development Analyse and negotiate support from Treasury, TEC, FRST Financials formatted by Geoff Palmer, MoRST Cabinet Paper To Minister 6/10 Cabinet Office and Committee 20/10 Approval $ Cabinet sits 17/11 for decision 20/11 Iterations of final business plan ** Sign off by wider stakeholder group ** Contract $ Implementation Appropriation Cabinet Paper negotiated with govt agencies MoRST/Treasury Julie and Kathleen to prepare Cabinet Paper Preview to Minister
  • 46.
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  • 50. Where shall we go, from here? www.bestgrid.org @bestgrid Nick Jones Director, BeSTGRID Co-Director eResearch, Centre for eResearch University of Auckland [email_address]

Notas do Editor

  1. Industry capability enhancement…