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Networks, people
& animal biodiversity


         Marco Pautasso,
     Division of Biology,
Imperial College London,
 Wye Campus, Kent, UK


    Oxford, 22 June 2007
Random sample of 100 papers per year
    on ‘species richness’ in WOS (1991-2004)




from: Lonsdale, Pautasso & Holdenrieder (in press) European Journal of Forest Research
Avian macroecology




                                                                abundance (individuals)
                                                               (c)




                                                                Log10 assemblage
                                                                                          Log10 plot area (km2)
Log10 plot area (km2)




                              Survey year
               (a), (b) & (c) from: Pautasso & Gaston (2006) Global Ecology & Biogeography;
               (d) from: Pautasso & Gaston (2005) Ecology Letters
Landscape pathology




from Desprez-Loustau et multi al. (in press) Trends in Ecology & Evolution
Epidemiological modelling of Phytophthora ramorum
(a)                                                   (c)




      (b)



                                                               (d)




(a) from: Holdenrieder,
Pautasso, Weisberg &      (b) from: Pautasso,               (c) from: Pautasso et   (d) from: Jeger, Pautasso,
Lonsdale (2004) Trends    Holdenrieder & Stenlid            multi al. (2007) SOD    Holdenrieder & Shaw
in Ecology & Evolution    (2005) Ecological Studies         Science Symposium III   (2007) New Phytologist
Network epidemiology




                                    Nature's guide for mentors




                               number of passengers per day
from: Hufnagel, Brockmann & Geisel (2004) PNAS
Epidemiology is just one of the
              many applications of network theory
                                NATURAL
Network pictures from:
Newman (2003) SIAM Review
                                             food webs

                                           cell
                                        metabolism
                                               neural                         Food web of Little Rock
                                              networks                          Lake, Wisconsin, US
                                              ant nests           sexual
                                                               partnerships
                                             DISEASE
                                             SPREAD
                                                                family
                                     innovation                networks
Internet                                flows co-authorship                                    HIV
structure                     railway urban road nets                                        spread
                 electrical  networks networks                                              network
               power grids                                telephone calls
                                                WWW
          computing          airport Internet              E-mail
                                                                     committees
            grids           networks     software maps    patterns
TECHNOLOGICAL                                                                       SOCIAL
Modified from: Jeger, Pautasso, Holdenrieder & Shaw (2007) New Phytologist
Acknowledgements

Peter Weisberg,     Chris Gilligan, Univ.
Univ. of Nevada,       of Cambridge
   Reno, US                              Mike Jeger,
                 Ottmar                Imperial College,    Mike Shaw,
           Holdenrieder,                    Wye              Univ. of
              ETHZ, CH                                       Reading


                  Kevin
                Gaston,
  Mike          Univ. of
               Sheffield                         Emanuele Della
  McKinney,                          Katrin     Valle, Politecnico di
  Univ. of                         Boehning        Milano, Italy
  Tennessee,                        -Gaese,
  US                         Univ. Mainz, Germany
References
Jokimäki J, Kaisanlahti-Jokimäki M-L, Suhonen J, Clergeau P, Pautasso M & Fernández-Juricic E (2011) Merging wildlife community ecology and animal behavioral ecology
for a better urban landscape planning. Landscape & Urban Planning 100: 383-385
Moslonka-Lefebvre M, Finley A, Dorigatti I, Dehnen-Schmutz K, Harwood T, Jeger MJ, Xu XM, Holdenrieder O & Pautasso M (2011) Networks in plant epidemiology: from
genes to landscapes, countries and continents. Phytopathology 101: 392-403
Pautasso M, Böhning-Gaese K, Clergeau P, Cueto VR, Dinetti M, Fernandez-Juricic E, Kaisanlahti-Jokimäki ML, Jokimäki J, McKinney ML, Sodhi NS, Storch D, Tomialojc L,
Weisberg PJ, Woinarski J, Fuller RA & Cantarello E (2011) Global macroecology of bird assemblages in urbanized and semi-natural ecosystems. Global Ecology &
Biogeography 20: 426-436
Barbosa AM, Fontaneto D, Marini L & Pautasso M (2010) Is the human population a large-scale indicator of the species richness of ground beetles? Anim Cons 13: 432-441
Barbosa AM, Fontaneto D, Marini L & Pautasso M (2010) Positive regional species–people correlations: a sampling artefact or a key issue for sustainable development?
Animal Conservation 13: 446-447
Cantarello E, Steck CE, Fontana P, Fontaneto D, Marini L & Pautasso M (2010) A multi-scale study of Orthoptera species richness and human population size controlling for
sampling effort. Naturwissenschaften 97: 265-271
Chiari C, Dinetti M, Licciardello C, Licitra G & Pautasso M (2010) Urbanization and the more-individuals hypothesis. Journal of Animal Ecology 79: 366-371
Dehnen-Schmutz K, Holdenrieder O, Jeger MJ & Pautasso M (2010) Structural change in the international horticultural industry: some implications for plant health. Scientia
Horticulturae 125: 1-15
Golding J, Güsewell S, Kreft H, Kuzevanov VY, Lehvävirta S, Parmentier I & Pautasso M (2010) Species-richness patterns of the living collections of the world's botanic
gardens: a matter of socio-economics? Annals of Botany 105: 689-696
MacLeod A, Pautasso M, Jeger M & Haines-Young R (2010) Evolution of the international regulation of plant pests & challenges for future plant health. Food Security 2: 49-70
Pautasso M (2010) Worsening file-drawer problem in the abstracts of natural, medical and social science databases. Scientometrics 85: 193-202
Pautasso M & Pautasso C (2010) Peer reviewing interdisciplinary papers. European Review 18: 227-237
Pautasso M & Schäfer H (2010) Peer review delay and selectivity in ecology journals. Scientometrics 84: 307-315
Pautasso M, Dehnen-Schmutz K, Holdenrieder O, Pietravalle S, Salama N, Jeger MJ, Lange E & Hehl-Lange S (2010) Plant health and global change – some implications for
landscape management. Biological Reviews 85: 729-755
Pautasso M, Moslonka-Lefebvre M & Jeger MJ (2010) The number of links to and from the starting node as a predictor of epidemic size in small-size directed networks.
Ecological Complexity 7: 424-432
Pautasso M, Xu XM, Jeger MJ, Harwood T, Moslonka-Lefebvre M & Pellis L (2010) Disease spread in small-size directed trade networks: the role of hierarchical categories.
Journal of Applied Ecology 47: 1300-1309
Pecher C, Fritz S, Marini L, Fontaneto D & Pautasso M (2010) Scale-dependence of the correlation between human population and the species richness of stream
macroinvertebrates. Basic Applied Ecology 11: 272-280
Harwood TD, Xu XM, Pautasso M, Jeger MJ & Shaw M (2009) Epidemiological risk assessment using linked network and grid based modelling: Phytophthora ramorum and P.
kernoviae in the UK. Ecological Modelling 220: 3353-3361
Moslonka-Lefebvre M, Pautasso M & Jeger MJ (2009) Disease spread in small-size directed networks: epidemic threshold, correlation between links to and from nodes, and
clustering. Journal of Theoretical Biology 260: 402-411
References (bis)
Pautasso M (2009) Geographical genetics and the conservation of forest trees. Perspectives in Plant Ecology, Systematics and Evolution 11: 157-189
Pautasso M & Dinetti M (2009) Avian species richness, human population and protected areas across Italy’s regions. Environmental Conservation 36: 22-31
Pautasso M & Powell G (2009) Aphid biodiversity is correlated with human population in European countries. Oecologia 160: 839-846
Pautasso M & Zotti M (2009) Macrofungal taxa and human population in Italy's regions. Biodiversity & Conservation 18: 473-485
Xu XM, Harwood TD, Pautasso M & Jeger MJ (2009) Spatio-temporal analysis of an invasive plant pathogen (Phytophthora ramorum) in England and Wales. Ecography 32:
504-516
Jeger MJ & Pautasso M (2008) Comparative epidemiology of zoosporic plant pathogens. European Journal of Plant Pathology 122: 111-126
Jeger MJ & Pautasso M (2008) Plant disease and global change – the importance of long-term data sets. New Phytologist 177: 8-11
Lonsdale D, Pautasso M & Holdenrieder O (2008) Wood-decaying fungi in the forest: conservation needs and management options. European Journal of Forest Research 127:
1-22
Pautasso M & Chiarucci A (2008) A test of the scale-dependence of the species abundance-people correlation for veteran trees in Italy. Annals of Botany 101: 709-715
Pautasso M & Fontaneto D (2008) A test of the species-people correlation for stream macro-invertebrates in European countries. Ecological Applications 18: 1842-1849
Pautasso M & Jeger MJ (2008) Epidemic threshold and network structure: the interplay of probability of transmission and of persistence in directed networks. Ecological
Complexity 5: 1-8
Pautasso M & Weisberg PJ (2008) Density-area relationships: the importance of the zeros. Global Ecology and Biogeography 17: 203-210
Schlick-Steiner B, Steiner F & Pautasso M (2008) Ants and people: a test of two mechanisms behind the large-scale human-biodiversity correlation for Formicidae in Europe. J
of Biogeography 35: 2195-2206
Steck CE & Pautasso M (2008) Human population, grasshopper and plant species richness in European countries. Acta Oecologica 34: 303-310
Jeger MJ, Pautasso M, Holdenrieder O & Shaw MW (2007) Modelling disease spread and control in networks: implications for plant sciences. New Phytologist 174: 179-197
Pautasso M (2007) Scale-dependence of the correlation between human presence and plant/vertebrate species richness. Ecology Letters 10: 16-24
Pautasso M & McKinney ML (2007) The botanist effect revisited: plant species richness, county area and human population size in the US. Conservation Biology 21, 5: 1333-
1340
Pautasso M & Parmentier I (2007) Are the living collections of the world’s botanical gardens following species-richness patterns observed in natural ecosystems? Botanica
Helvetica 117: 15-28
Pautasso M & Gaston KJ (2006) A test of the mechanisms behind avian generalized individuals-area relationships. Global Ecology and Biogeography 15: 303-317
Pautasso M & Gaston KJ (2005) Resources and global avian assemblage structure in forests. Ecology Letters 8: 282-289
Pautasso M, Holdenrieder O & Stenlid J (2005) Susceptibility to fungal pathogens of forests differing in tree diversity. In: Forest Diversity and Function (Scherer-Lorenzen M,
Koerner Ch & Schulze D, eds.). Ecol. Studies Vol. 176. Springer, Berlin, pp. 263-289
Holdenrieder O, Pautasso M, Weisberg PJ & Lonsdale D (2004) Tree diseases and landscape processes: the challenge of landscape pathology. Trends in Ecology and
Evolution 19, 8: 446-452

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Networks, people and animal biodiversity

  • 1. Networks, people & animal biodiversity Marco Pautasso, Division of Biology, Imperial College London, Wye Campus, Kent, UK Oxford, 22 June 2007
  • 2. Random sample of 100 papers per year on ‘species richness’ in WOS (1991-2004) from: Lonsdale, Pautasso & Holdenrieder (in press) European Journal of Forest Research
  • 3. Avian macroecology abundance (individuals) (c) Log10 assemblage Log10 plot area (km2) Log10 plot area (km2) Survey year (a), (b) & (c) from: Pautasso & Gaston (2006) Global Ecology & Biogeography; (d) from: Pautasso & Gaston (2005) Ecology Letters
  • 4. Landscape pathology from Desprez-Loustau et multi al. (in press) Trends in Ecology & Evolution
  • 5. Epidemiological modelling of Phytophthora ramorum (a) (c) (b) (d) (a) from: Holdenrieder, Pautasso, Weisberg & (b) from: Pautasso, (c) from: Pautasso et (d) from: Jeger, Pautasso, Lonsdale (2004) Trends Holdenrieder & Stenlid multi al. (2007) SOD Holdenrieder & Shaw in Ecology & Evolution (2005) Ecological Studies Science Symposium III (2007) New Phytologist
  • 6. Network epidemiology Nature's guide for mentors number of passengers per day from: Hufnagel, Brockmann & Geisel (2004) PNAS
  • 7. Epidemiology is just one of the many applications of network theory NATURAL Network pictures from: Newman (2003) SIAM Review food webs cell metabolism neural Food web of Little Rock networks Lake, Wisconsin, US ant nests sexual partnerships DISEASE SPREAD family innovation networks Internet flows co-authorship HIV structure railway urban road nets spread electrical networks networks network power grids telephone calls WWW computing airport Internet E-mail committees grids networks software maps patterns TECHNOLOGICAL SOCIAL Modified from: Jeger, Pautasso, Holdenrieder & Shaw (2007) New Phytologist
  • 8. Acknowledgements Peter Weisberg, Chris Gilligan, Univ. Univ. of Nevada, of Cambridge Reno, US Mike Jeger, Ottmar Imperial College, Mike Shaw, Holdenrieder, Wye Univ. of ETHZ, CH Reading Kevin Gaston, Mike Univ. of Sheffield Emanuele Della McKinney, Katrin Valle, Politecnico di Univ. of Boehning Milano, Italy Tennessee, -Gaese, US Univ. Mainz, Germany
  • 9. References Jokimäki J, Kaisanlahti-Jokimäki M-L, Suhonen J, Clergeau P, Pautasso M & Fernández-Juricic E (2011) Merging wildlife community ecology and animal behavioral ecology for a better urban landscape planning. Landscape & Urban Planning 100: 383-385 Moslonka-Lefebvre M, Finley A, Dorigatti I, Dehnen-Schmutz K, Harwood T, Jeger MJ, Xu XM, Holdenrieder O & Pautasso M (2011) Networks in plant epidemiology: from genes to landscapes, countries and continents. Phytopathology 101: 392-403 Pautasso M, Böhning-Gaese K, Clergeau P, Cueto VR, Dinetti M, Fernandez-Juricic E, Kaisanlahti-Jokimäki ML, Jokimäki J, McKinney ML, Sodhi NS, Storch D, Tomialojc L, Weisberg PJ, Woinarski J, Fuller RA & Cantarello E (2011) Global macroecology of bird assemblages in urbanized and semi-natural ecosystems. Global Ecology & Biogeography 20: 426-436 Barbosa AM, Fontaneto D, Marini L & Pautasso M (2010) Is the human population a large-scale indicator of the species richness of ground beetles? Anim Cons 13: 432-441 Barbosa AM, Fontaneto D, Marini L & Pautasso M (2010) Positive regional species–people correlations: a sampling artefact or a key issue for sustainable development? Animal Conservation 13: 446-447 Cantarello E, Steck CE, Fontana P, Fontaneto D, Marini L & Pautasso M (2010) A multi-scale study of Orthoptera species richness and human population size controlling for sampling effort. Naturwissenschaften 97: 265-271 Chiari C, Dinetti M, Licciardello C, Licitra G & Pautasso M (2010) Urbanization and the more-individuals hypothesis. Journal of Animal Ecology 79: 366-371 Dehnen-Schmutz K, Holdenrieder O, Jeger MJ & Pautasso M (2010) Structural change in the international horticultural industry: some implications for plant health. Scientia Horticulturae 125: 1-15 Golding J, Güsewell S, Kreft H, Kuzevanov VY, Lehvävirta S, Parmentier I & Pautasso M (2010) Species-richness patterns of the living collections of the world's botanic gardens: a matter of socio-economics? Annals of Botany 105: 689-696 MacLeod A, Pautasso M, Jeger M & Haines-Young R (2010) Evolution of the international regulation of plant pests & challenges for future plant health. Food Security 2: 49-70 Pautasso M (2010) Worsening file-drawer problem in the abstracts of natural, medical and social science databases. Scientometrics 85: 193-202 Pautasso M & Pautasso C (2010) Peer reviewing interdisciplinary papers. European Review 18: 227-237 Pautasso M & Schäfer H (2010) Peer review delay and selectivity in ecology journals. Scientometrics 84: 307-315 Pautasso M, Dehnen-Schmutz K, Holdenrieder O, Pietravalle S, Salama N, Jeger MJ, Lange E & Hehl-Lange S (2010) Plant health and global change – some implications for landscape management. Biological Reviews 85: 729-755 Pautasso M, Moslonka-Lefebvre M & Jeger MJ (2010) The number of links to and from the starting node as a predictor of epidemic size in small-size directed networks. Ecological Complexity 7: 424-432 Pautasso M, Xu XM, Jeger MJ, Harwood T, Moslonka-Lefebvre M & Pellis L (2010) Disease spread in small-size directed trade networks: the role of hierarchical categories. Journal of Applied Ecology 47: 1300-1309 Pecher C, Fritz S, Marini L, Fontaneto D & Pautasso M (2010) Scale-dependence of the correlation between human population and the species richness of stream macroinvertebrates. Basic Applied Ecology 11: 272-280 Harwood TD, Xu XM, Pautasso M, Jeger MJ & Shaw M (2009) Epidemiological risk assessment using linked network and grid based modelling: Phytophthora ramorum and P. kernoviae in the UK. Ecological Modelling 220: 3353-3361 Moslonka-Lefebvre M, Pautasso M & Jeger MJ (2009) Disease spread in small-size directed networks: epidemic threshold, correlation between links to and from nodes, and clustering. Journal of Theoretical Biology 260: 402-411
  • 10. References (bis) Pautasso M (2009) Geographical genetics and the conservation of forest trees. Perspectives in Plant Ecology, Systematics and Evolution 11: 157-189 Pautasso M & Dinetti M (2009) Avian species richness, human population and protected areas across Italy’s regions. Environmental Conservation 36: 22-31 Pautasso M & Powell G (2009) Aphid biodiversity is correlated with human population in European countries. Oecologia 160: 839-846 Pautasso M & Zotti M (2009) Macrofungal taxa and human population in Italy's regions. Biodiversity & Conservation 18: 473-485 Xu XM, Harwood TD, Pautasso M & Jeger MJ (2009) Spatio-temporal analysis of an invasive plant pathogen (Phytophthora ramorum) in England and Wales. Ecography 32: 504-516 Jeger MJ & Pautasso M (2008) Comparative epidemiology of zoosporic plant pathogens. European Journal of Plant Pathology 122: 111-126 Jeger MJ & Pautasso M (2008) Plant disease and global change – the importance of long-term data sets. New Phytologist 177: 8-11 Lonsdale D, Pautasso M & Holdenrieder O (2008) Wood-decaying fungi in the forest: conservation needs and management options. European Journal of Forest Research 127: 1-22 Pautasso M & Chiarucci A (2008) A test of the scale-dependence of the species abundance-people correlation for veteran trees in Italy. Annals of Botany 101: 709-715 Pautasso M & Fontaneto D (2008) A test of the species-people correlation for stream macro-invertebrates in European countries. Ecological Applications 18: 1842-1849 Pautasso M & Jeger MJ (2008) Epidemic threshold and network structure: the interplay of probability of transmission and of persistence in directed networks. Ecological Complexity 5: 1-8 Pautasso M & Weisberg PJ (2008) Density-area relationships: the importance of the zeros. Global Ecology and Biogeography 17: 203-210 Schlick-Steiner B, Steiner F & Pautasso M (2008) Ants and people: a test of two mechanisms behind the large-scale human-biodiversity correlation for Formicidae in Europe. J of Biogeography 35: 2195-2206 Steck CE & Pautasso M (2008) Human population, grasshopper and plant species richness in European countries. Acta Oecologica 34: 303-310 Jeger MJ, Pautasso M, Holdenrieder O & Shaw MW (2007) Modelling disease spread and control in networks: implications for plant sciences. New Phytologist 174: 179-197 Pautasso M (2007) Scale-dependence of the correlation between human presence and plant/vertebrate species richness. Ecology Letters 10: 16-24 Pautasso M & McKinney ML (2007) The botanist effect revisited: plant species richness, county area and human population size in the US. Conservation Biology 21, 5: 1333- 1340 Pautasso M & Parmentier I (2007) Are the living collections of the world’s botanical gardens following species-richness patterns observed in natural ecosystems? Botanica Helvetica 117: 15-28 Pautasso M & Gaston KJ (2006) A test of the mechanisms behind avian generalized individuals-area relationships. Global Ecology and Biogeography 15: 303-317 Pautasso M & Gaston KJ (2005) Resources and global avian assemblage structure in forests. Ecology Letters 8: 282-289 Pautasso M, Holdenrieder O & Stenlid J (2005) Susceptibility to fungal pathogens of forests differing in tree diversity. In: Forest Diversity and Function (Scherer-Lorenzen M, Koerner Ch & Schulze D, eds.). Ecol. Studies Vol. 176. Springer, Berlin, pp. 263-289 Holdenrieder O, Pautasso M, Weisberg PJ & Lonsdale D (2004) Tree diseases and landscape processes: the challenge of landscape pathology. Trends in Ecology and Evolution 19, 8: 446-452