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Interpretable Predictive Models in the Healthcare Domain
Sridharan Kamalakannan
2/22/2019
Pipeline
DATA
• Demographic
• Medical & Claims
• Pharmacy Claims
• Lab & Test Results
• Welcome Calls
• Health Programs
• Consumer Data
PREDICTOR CATEGORIES
Demographics Clinical
Behavioral
Medication
E.g., Age, sex
disability
E.g., chronic
conditions, BH,
hospitalization,
screenings
Lifestyle, health
programs
E.g., asthma,
diabetes, heart
failure, BH
MODELING
CHOICES
BH
Severity
Predictive
Model
Data Extraction Feature Engineering and
Transformation
Over 4,000 potential features were
used for development.
Model Development
• Selection of the most important
predictors
• Different modeling techniques and
combinations explored
1 2 3
• Branching
• Linear
Regression
• Decision Trees
• Neural Networks
• Least Angle
Regression
• Ensemble
Application
The BH severity score can be paired with a
medical score (Charlson Comorbidity Index)
to create an analytic framework called the
Behavioral Health Quadrants, allowing:
• Better understanding of the relative
severity of medical & behavioral health
in an individual
• Greater ability to direct individuals to
the right level of care
28% of Medicare Advantage participants
had sufficient BH utilization to be assigned
to a BH quadrant.
Less Medical Health Risk/Complexity More
Severe Med +
BH At Risk
Severe BH +
Severe Med
Severe BH +
Mild-Moderate
Med
BH At Risk +
Mild-Moderate
Med
LessBehavioralHealth
Risk/ComplexityMore
*Adapted from Four Quadrant Clinical Integration Model (National
Council for Behavioral Health). Values as of Jan 2016. Based on
membership as of Dec 2015 and claims Jan 2015 – Dec 2015.
Medicare Advantage BH Quadrants*
Agenda
01 | An Example
02 | Why are interpretable models necessary?
03 | Taxonomy of interpretable models
04 | LIME Intuition
05 | LIME Recipe
06 | Pros and Cons
07 | Humana Use Cases
4
An Example: Husky vs Wolf Classifier
Husky
• References to the above picture are at the end of the presentation
• https://arxiv.org/pdf/1602.04938.pdf
Wolf
?
Click to edit Master title style
Human Curiosity
Satisfy the natural human curiosity to find explanations
for unexpected events
Trust
Build enough trust in the model so that it is
accepted and used in the real-world
Detecting Bias
Unethical discrimination of models against certain
factors
Identify leaks
High accuracy can sometimes be due to leakage
from the target
Prescriptive Analytics
Model explanations drive/prescribe follow up
actions items
Audit & Improve
Explanations serve as a debugging tool to
continuously audit and improve the model
Why are interpretable models necessary?
https://christophm.github.io/interpretable-ml-book/lime.html
https://arxiv.org/pdf/1602.04938v1.pdf
Taxonomy of interpretable models
Intrinsic vs Post-hoc
Model-Specific vs Model Agnostic
Local vs Global
https://christophm.github.io/interpretable-ml-book/lime.html
https://arxiv.org/pdf/1602.04938v1.pdf
LIME : Intuition
The key intuition behind LIME approach is that it is much easier to approximate a black-box model by a simple
model locally (in the neighborhood of the prediction we want to explain), as opposed to trying to approximate
a model globally.
https://christophm.github.io/interpretable-ml-book/lime.html
https://arxiv.org/pdf/1602.04938v1.pdf
LIME Recipe
1
• Select your instance of interest for which you want to have an explanation of its black box prediction
2
• Perturb your dataset
3
• Get the black box predictions for these new points
4
• Weight the new samples according to their proximity to the instance of interest
5
• Train a weighted, interpretable model on the dataset with the variations
6
• Explain the prediction by interpreting the local model
M
X
Y
Simple Linear Model
Decision Tree
TOP
DRIVERS
W
https://christophm.github.io/interpretable-ml-book/lime.html
https://arxiv.org/pdf/1602.04938v1.pdf
Pros and Cons
Pros
Model-Agnostic
Feature-Agnostic
Widely
employed by ML
solutions
Cons
Computationally
complex
Sensitive to
neighborhood
Smoothen
Outreach
Humana Clinicians are equipped
with talking points that are top
drivers of our members’ health –
smoothing an initial outreach
Produce the 5 most clinically-relevant health drivers per member and display for the clinician at time of referral
Identify Top
Barriers
Interpretable models help
identify the top barriers that
impede a person’s Disease
Specific Best Practices
Focused
Interventions
Identifying the barriers helps
clinicians focus on addressing
important and relevant health
needs
Humana Use Cases
Questions?
References
• https://www.google.com/url?sa=i&source=images&cd=&cad=rja&uact=8&ved=2ahUKEwjDh4ve-
N7fAhWOT98KHcbvCb8QjRx6BAgBEAU&url=https%3A%2F%2Fen.wikipedia.org%2Fwiki%2FSiberian_Husky&psig=AOvVaw16MpnkTNQEnLZG8vvACIHo&ust=1547062800332581
• https://www.google.com/imgres?imgurl=https%3A%2F%2Fwww.pointvicentevet.com%2Fsites%2Fdefault%2Ffiles%2Fstyles%2Flarge%2Fadaptive-image%2Fpublic%2Fsiberian-husky-dog-breed-
info.jpg%3Fitok%3DynYUSa8o&imgrefurl=https%3A%2F%2Fwww.pointvicentevet.com%2Fservices%2Fdogs%2Fbreeds%2Fsiberian-husky&docid=PnpomRMFvij6zM&tbnid=J34VKj-
dw7vPcM%3A&vet=10ahUKEwjejrGW-N7fAhXoRd8KHTwBAiwQMwhtKAQwBA..i&w=480&h=480&bih=955&biw=1920&q=husky&ved=0ahUKEwjejrGW-
N7fAhXoRd8KHTwBAiwQMwhtKAQwBA&iact=mrc&uact=8
• https://www.google.com/imgres?imgurl=https%3A%2F%2Fi.redd.it%2Fpncd4uz5q4q01.jpg&imgrefurl=https%3A%2F%2Fwww.reddit.com%2Fr%2Fhusky%2Fcomments%2F8a1ybo%2Fso_sweeet_
3%2F&docid=I3qu1cH71l6bCM&tbnid=zjKrKoKEnCd6uM%3A&vet=10ahUKEwjejrGW-
N7fAhXoRd8KHTwBAiwQMwi7AShFMEU..i&w=220&h=261&bih=955&biw=1920&q=husky&ved=0ahUKEwjejrGW-N7fAhXoRd8KHTwBAiwQMwi7AShFMEU&iact=mrc&uact=8
• https://www.google.com/imgres?imgurl=https%3A%2F%2Fwww.simmonsandfletcher.com%2Fwp-content%2Fuploads%2F2013%2F10%2Fsiberian-
1024x681.jpg&imgrefurl=https%3A%2F%2Fwww.simmonsandfletcher.com%2Fdog-bites-attacks%2Fsiberian-husky%2F&docid=gu79vWo-
9FTgOM&tbnid=EDTEYEqIgCsf9M%3A&vet=10ahUKEwjejrGW-N7fAhXoRd8KHTwBAiwQMwifASgpMCk..i&w=1024&h=681&bih=955&biw=1920&q=husky&ved=0ahUKEwjejrGW-
N7fAhXoRd8KHTwBAiwQMwifASgpMCk&iact=mrc&uact=8
• https://www.google.com/url?sa=i&source=images&cd=&cad=rja&uact=8&ved=2ahUKEwjby6DZ-
t7fAhXtnuAKHTAVDj8QjRx6BAgBEAU&url=https%3A%2F%2Ffineartamerica.com%2Ffeatured%2Ftimber-wolf-in-snow-michael-
cummings.html&psig=AOvVaw3WCHo7r6pWEpruflUEhJWS&ust=1547063430131191
• https://www.google.com/imgres?imgurl=http%3A%2F%2Fpixdaus.com%2Ffiles%2Fitems%2Fpics%2F4%2F92%2F261492_6fec0d2047da01e45439ee48aa4dd7d0_large.jpg&imgrefurl=http%3A%2F
%2Fpixdaus.com%2Fwolf-running-in-the-snow-wolf-snow-running%2Fitems%2Fview%2F261492%2F&docid=xbmlvaU1Oqn-mM&tbnid=vHRg4XDHelvXCM%3A&vet=10ahUKEwj-ndDC-
t7fAhWyTt8KHVBSBcwQMwiRASgsMCw..i&w=900&h=563&bih=955&biw=1920&q=wolf%20with%20snow&ved=0ahUKEwj-ndDC-t7fAhWyTt8KHVBSBcwQMwiRASgsMCw&iact=mrc&uact=8
• https://www.google.com/imgres?imgurl=https%3A%2F%2Fcache.desktopnexus.com%2Fthumbseg%2F1472%2F1472148-
bigthumbnail.jpg&imgrefurl=https%3A%2F%2Fanimals.desktopnexus.com%2Fwallpaper%2F1472148%2F&docid=js6YQW-yLFpUZM&tbnid=e8VHz-
IghbdanM%3A&vet=10ahUKEwiysZTV_t7fAhUjheAKHVCKBN0QMwhFKAcwBw..i&w=450&h=337&bih=955&biw=1920&q=black%20and%20white%20wolf%20with%20snow&ved=0ahUKEwiysZTV_
t7fAhUjheAKHVCKBN0QMwhFKAcwBw&iact=mrc&uact=8
• https://arxiv.org/pdf/1602.04938v1.pdf
• https://christophm.github.io/interpretable-ml-book/lime.html

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Data Science Salon: nterpretable Predictive Models in the Healthcare Domain

  • 1. Interpretable Predictive Models in the Healthcare Domain Sridharan Kamalakannan 2/22/2019
  • 2. Pipeline DATA • Demographic • Medical & Claims • Pharmacy Claims • Lab & Test Results • Welcome Calls • Health Programs • Consumer Data PREDICTOR CATEGORIES Demographics Clinical Behavioral Medication E.g., Age, sex disability E.g., chronic conditions, BH, hospitalization, screenings Lifestyle, health programs E.g., asthma, diabetes, heart failure, BH MODELING CHOICES BH Severity Predictive Model Data Extraction Feature Engineering and Transformation Over 4,000 potential features were used for development. Model Development • Selection of the most important predictors • Different modeling techniques and combinations explored 1 2 3 • Branching • Linear Regression • Decision Trees • Neural Networks • Least Angle Regression • Ensemble
  • 3. Application The BH severity score can be paired with a medical score (Charlson Comorbidity Index) to create an analytic framework called the Behavioral Health Quadrants, allowing: • Better understanding of the relative severity of medical & behavioral health in an individual • Greater ability to direct individuals to the right level of care 28% of Medicare Advantage participants had sufficient BH utilization to be assigned to a BH quadrant. Less Medical Health Risk/Complexity More Severe Med + BH At Risk Severe BH + Severe Med Severe BH + Mild-Moderate Med BH At Risk + Mild-Moderate Med LessBehavioralHealth Risk/ComplexityMore *Adapted from Four Quadrant Clinical Integration Model (National Council for Behavioral Health). Values as of Jan 2016. Based on membership as of Dec 2015 and claims Jan 2015 – Dec 2015. Medicare Advantage BH Quadrants*
  • 4. Agenda 01 | An Example 02 | Why are interpretable models necessary? 03 | Taxonomy of interpretable models 04 | LIME Intuition 05 | LIME Recipe 06 | Pros and Cons 07 | Humana Use Cases 4
  • 5. An Example: Husky vs Wolf Classifier Husky • References to the above picture are at the end of the presentation • https://arxiv.org/pdf/1602.04938.pdf Wolf ?
  • 6. Click to edit Master title style Human Curiosity Satisfy the natural human curiosity to find explanations for unexpected events Trust Build enough trust in the model so that it is accepted and used in the real-world Detecting Bias Unethical discrimination of models against certain factors Identify leaks High accuracy can sometimes be due to leakage from the target Prescriptive Analytics Model explanations drive/prescribe follow up actions items Audit & Improve Explanations serve as a debugging tool to continuously audit and improve the model Why are interpretable models necessary? https://christophm.github.io/interpretable-ml-book/lime.html https://arxiv.org/pdf/1602.04938v1.pdf
  • 7. Taxonomy of interpretable models Intrinsic vs Post-hoc Model-Specific vs Model Agnostic Local vs Global https://christophm.github.io/interpretable-ml-book/lime.html https://arxiv.org/pdf/1602.04938v1.pdf
  • 8. LIME : Intuition The key intuition behind LIME approach is that it is much easier to approximate a black-box model by a simple model locally (in the neighborhood of the prediction we want to explain), as opposed to trying to approximate a model globally. https://christophm.github.io/interpretable-ml-book/lime.html https://arxiv.org/pdf/1602.04938v1.pdf
  • 9. LIME Recipe 1 • Select your instance of interest for which you want to have an explanation of its black box prediction 2 • Perturb your dataset 3 • Get the black box predictions for these new points 4 • Weight the new samples according to their proximity to the instance of interest 5 • Train a weighted, interpretable model on the dataset with the variations 6 • Explain the prediction by interpreting the local model M X Y Simple Linear Model Decision Tree TOP DRIVERS W https://christophm.github.io/interpretable-ml-book/lime.html https://arxiv.org/pdf/1602.04938v1.pdf
  • 10. Pros and Cons Pros Model-Agnostic Feature-Agnostic Widely employed by ML solutions Cons Computationally complex Sensitive to neighborhood
  • 11. Smoothen Outreach Humana Clinicians are equipped with talking points that are top drivers of our members’ health – smoothing an initial outreach Produce the 5 most clinically-relevant health drivers per member and display for the clinician at time of referral Identify Top Barriers Interpretable models help identify the top barriers that impede a person’s Disease Specific Best Practices Focused Interventions Identifying the barriers helps clinicians focus on addressing important and relevant health needs Humana Use Cases
  • 13. References • https://www.google.com/url?sa=i&source=images&cd=&cad=rja&uact=8&ved=2ahUKEwjDh4ve- N7fAhWOT98KHcbvCb8QjRx6BAgBEAU&url=https%3A%2F%2Fen.wikipedia.org%2Fwiki%2FSiberian_Husky&psig=AOvVaw16MpnkTNQEnLZG8vvACIHo&ust=1547062800332581 • https://www.google.com/imgres?imgurl=https%3A%2F%2Fwww.pointvicentevet.com%2Fsites%2Fdefault%2Ffiles%2Fstyles%2Flarge%2Fadaptive-image%2Fpublic%2Fsiberian-husky-dog-breed- info.jpg%3Fitok%3DynYUSa8o&imgrefurl=https%3A%2F%2Fwww.pointvicentevet.com%2Fservices%2Fdogs%2Fbreeds%2Fsiberian-husky&docid=PnpomRMFvij6zM&tbnid=J34VKj- dw7vPcM%3A&vet=10ahUKEwjejrGW-N7fAhXoRd8KHTwBAiwQMwhtKAQwBA..i&w=480&h=480&bih=955&biw=1920&q=husky&ved=0ahUKEwjejrGW- N7fAhXoRd8KHTwBAiwQMwhtKAQwBA&iact=mrc&uact=8 • https://www.google.com/imgres?imgurl=https%3A%2F%2Fi.redd.it%2Fpncd4uz5q4q01.jpg&imgrefurl=https%3A%2F%2Fwww.reddit.com%2Fr%2Fhusky%2Fcomments%2F8a1ybo%2Fso_sweeet_ 3%2F&docid=I3qu1cH71l6bCM&tbnid=zjKrKoKEnCd6uM%3A&vet=10ahUKEwjejrGW- N7fAhXoRd8KHTwBAiwQMwi7AShFMEU..i&w=220&h=261&bih=955&biw=1920&q=husky&ved=0ahUKEwjejrGW-N7fAhXoRd8KHTwBAiwQMwi7AShFMEU&iact=mrc&uact=8 • https://www.google.com/imgres?imgurl=https%3A%2F%2Fwww.simmonsandfletcher.com%2Fwp-content%2Fuploads%2F2013%2F10%2Fsiberian- 1024x681.jpg&imgrefurl=https%3A%2F%2Fwww.simmonsandfletcher.com%2Fdog-bites-attacks%2Fsiberian-husky%2F&docid=gu79vWo- 9FTgOM&tbnid=EDTEYEqIgCsf9M%3A&vet=10ahUKEwjejrGW-N7fAhXoRd8KHTwBAiwQMwifASgpMCk..i&w=1024&h=681&bih=955&biw=1920&q=husky&ved=0ahUKEwjejrGW- N7fAhXoRd8KHTwBAiwQMwifASgpMCk&iact=mrc&uact=8 • https://www.google.com/url?sa=i&source=images&cd=&cad=rja&uact=8&ved=2ahUKEwjby6DZ- t7fAhXtnuAKHTAVDj8QjRx6BAgBEAU&url=https%3A%2F%2Ffineartamerica.com%2Ffeatured%2Ftimber-wolf-in-snow-michael- cummings.html&psig=AOvVaw3WCHo7r6pWEpruflUEhJWS&ust=1547063430131191 • https://www.google.com/imgres?imgurl=http%3A%2F%2Fpixdaus.com%2Ffiles%2Fitems%2Fpics%2F4%2F92%2F261492_6fec0d2047da01e45439ee48aa4dd7d0_large.jpg&imgrefurl=http%3A%2F %2Fpixdaus.com%2Fwolf-running-in-the-snow-wolf-snow-running%2Fitems%2Fview%2F261492%2F&docid=xbmlvaU1Oqn-mM&tbnid=vHRg4XDHelvXCM%3A&vet=10ahUKEwj-ndDC- t7fAhWyTt8KHVBSBcwQMwiRASgsMCw..i&w=900&h=563&bih=955&biw=1920&q=wolf%20with%20snow&ved=0ahUKEwj-ndDC-t7fAhWyTt8KHVBSBcwQMwiRASgsMCw&iact=mrc&uact=8 • https://www.google.com/imgres?imgurl=https%3A%2F%2Fcache.desktopnexus.com%2Fthumbseg%2F1472%2F1472148- bigthumbnail.jpg&imgrefurl=https%3A%2F%2Fanimals.desktopnexus.com%2Fwallpaper%2F1472148%2F&docid=js6YQW-yLFpUZM&tbnid=e8VHz- IghbdanM%3A&vet=10ahUKEwiysZTV_t7fAhUjheAKHVCKBN0QMwhFKAcwBw..i&w=450&h=337&bih=955&biw=1920&q=black%20and%20white%20wolf%20with%20snow&ved=0ahUKEwiysZTV_ t7fAhUjheAKHVCKBN0QMwhFKAcwBw&iact=mrc&uact=8 • https://arxiv.org/pdf/1602.04938v1.pdf • https://christophm.github.io/interpretable-ml-book/lime.html