SlideShare a Scribd company logo
1 of 47
Download to read offline
Within-family Mendelian
Randomization
In press at NatureCommunications
York University 12th June 2020
Neil Davies, neil.davies@bristol.ac.uk
Ben Brumpton*1,2,3, Eleanor Sanderson2,4, Fernando Hartwig2,5, Sean Harrison2,4, Gunnhild Åberge Vie1,
Yoonsu Cho2,4, Laura D Howe2,4, Amanda Hughes2,4, Dorret I Boomsa6, Alexandra Havdahl2,7,8, John
Hopper9, Michael Neale10, Michel G Nivard6, Nancy L Pedersen11, ChandraRenyolds12, Elliot M Tucker-
Drob13, Andrew Grotzinger,13 Laruence Howe2,4, Tim Morris2,4, Shuai Li14,15, MR within-family Consortium,
Wei-Min Chen16, Johan Håkon Bjørngaard1,KristianHveem1, Cristen Willer17,18,19, David M Evans2,20, Jaakko
Kaprio21,22, George Davey Smith2,4,^, Bjørn Olav Åsvold1,23^, Gibran Hemani2,4,^, Neil M Davies2,4,^
1 K.G.Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, NTNU,
Norwegian University of Science and Technology, Norway.
2 Medical Research Council IntegrativeEpidemiology Unit, University of Bristol,BS8 2BN,United Kingdom.
3 Clinic of Thoracic and OccupationalMedicine, St. Olavs Hospital, Trondheim University Hospital.
https://www.biorxiv.org/content/10.1101/602516v1
• Questions very welcome!
• Please feel free to interrupt at any time, I’m happy to clarify, discuss,
debate, whatever.
Overview
1. Introduction to Mendelian randomization (genetic IVs)
2. Family based designs
3. Simulations
4. Empirical example: The effects of height and BMI on education,
blood pressure and diabetes
5. The Sibling GWAS
Why classical epidemiology failed
A step-by-step guide to classical epidemiology
1. Get sample (e.g. civil servants, doctors,
women)
2. Measure risk factor
3. Either estimate
• Cross sectional associations with disease
• Longitudinal associations with disease
4. Publish in NEJM
5. Spend $$$ in RCT, -> fails to replicate
6. Pick another risk factor
Does taking vit E reduce risk of coronary heart
disease?
RCTs did not replicate this finding
Why? Endogeneity, confounding, and measurement error.
G. Davey Smith, M. V. Holmes, N. M. Davies,S. Ebrahim,Mendel’s laws,Mendelian randomization and causal inferencein observational data:substantiveand nomenclatural issues.EurJ Epidemiol. 35, 99–111 (2020).
Econometrics to the rescue?
• Classic epi – adjust measure
confounders
• Impossible to fully measure covariates
• Need to estimate causal effects even if
there are unmeasured confounders of
the exposure-outcome relationship
• Instrumental variables and natural
experiments could help
The instrumental variable
assumptions
The instrumentalvariableassumptions:
1. Relevance:The instrument associateswith the exposure of interest
2. Independence:There are no confoundersof the instrument-outcomeassociation
3. Exclusion restriction: The instrument only affects the outcome via the exposure
P. Wright, Letter from Philip Wrightto Sewall Wright, 4 March 1926., (availableat
https://ase.tufts.edu/economics/documents/wrightPhilipAndSewall.pdf).
J. D. Angrist, G. W. Imbens, D. B. Rubin,Identification of causal effects usinginstrumental variables.JAm Stat Assoc. 91, 444–45
(1996).
J. Pearl,Causality: models, reasoning, and inference (Cambridge University Press,Cambridge,U.K. ; New York, 2000).
M. A. Hernán, J. Robins,Instruments for causal inference:an epidemiologist’s dream?Epidemiology. 17, 360–372 (2006).
and many, many others……
Instrument Exposure Outcome
Confounder
Mendelian randomization=Genetic lotteries
• DNA is randomly transmitted from
parents to offspring
• Germline DNA is not affected by the
environment
• The human genome:
• ~3 billion base pairs (A, C, G, or T)
• Over 650 million variants
• 15 million common variants (minor
allele frequency >1%)
• Sequencing vs genotyping
M. Katan,Apoupoprotein E Isoforms,Serum Cholesterol,And Cancer. The Lancet. 327, 507–508 (1986).
Random genetic inheritance
• Genetic variants
• Are a point in the genome that differs across the population
• A common type of variant is single nucleotide polymorphisms (SNPs)
• SNPs have one or more alleles
• A conception offspring inherit at each SNP
• One of mother’s two alleles
• One of father’s two alleles
G. Davey Smith, S. Ebrahim,“Mendelian randomization”:can genetic epidemiology contribute to understandingenvironmental
determinants of disease? Int J Epidemiol. 32, 1–22 (2003).
Nature’s randomized trials
G. Davey Smith, S. Ebrahim,What can mendelian randomisation tell us aboutmodifiablebehavioural and environmental exposures ?
BMJ. 330, 1076–1079 (2005).
Genetic variants as instrumental variables
The instrumentalvariableassumptions:
1. Relevance:SNPs associate with risk factors
2. Independence:SNPs are randomly allocatedat conception
3. Exclusion restriction: SNPs tend to be inherited independentlyof SNPs for other traits
(Mendel’s law of independentassortment)
G. Davey Smith, D. A. Lawlor,R. Harbord,N. Timpson, I. Day,S. Ebrahim,Clustered environments and randomized genes: a
fundamental distinction between conventional and genetic epidemiology.PLoS Med. 4, e352 (2007).
BMI SNPs BMI Education
Confounder
Mendelian randomization: a step-by-step guide
1. Define hypothesis
• E.g. does BMI affect educational attainment?
2. Select genetic variants from GWAS
• which SNPs associate with BMI? Clump + threshold at p<5×10-08
3. Estimate effect of exposure on outcome
• One sample IV estimators, 2SLS, structural mean models, weak instrument
robust methods, polygenic scores
• Two-sample instrumentalvariable estimators
• Pleiotropy robust methods - IVW, MR-Egger, weighted median
4. Sensitivity analyses N. M. Davies,M. V. Holmes, G. Davey Smith, Reading Mendelian randomisation studies:a guide,glossary,and checklist
for clinicians.BMJ, k601 (2018).
G. Hemani, J. Bowden, G. Davey Smith, Evaluatingthe potential roleof pleiotropy in Mendelian randomization studies.
Human Molecular Genetics. 27, R195–R208 (2018).
Genome-wide association studies (GWAS)
• Estimate association between phenotype and SNPs across the
genome
• Up to 40 million variants
• Linear or logistic regression
• Covariates
• Sex
• Age
• Principal componentsof genetic variation (PCs)
• Samples of unrelated individuals (less than 3rd degree relatives)
• Large databases of GWAS estimates available (e.g. MR-Base)
G. Hemani, J. Zheng, B. Elsworth,K. H. Wade, V. Haberland,D. Baird,C. Laurin,S. Burgess, J. Bowden, R. Langdon, V. Y. Tan, J.
Yarmolinsky,H.A. Shihab,N. J. Timpson,D. M. Evans,C. Relton, R. M. Martin,G. Davey Smith, T. R. Gaunt, P. C. Haycock, The MR-Base
platformsupports systematic causal inferenceacrossthehuman phenome. eLife. 7 (2018), doi:10.7554/eLife.34408.
ALSPAC, unrelatedindividuals,
MR suggests height affects IQ
and academic attainment.
UK Biobank, unrelatedindividuals– MR suggests BMI/height affects education.
Comparison of ROSLA and
MR estimates of effect of
educationon a range of
phenotypes in the UK
Biobank.
MR in unrelatedindividuals
suggests educationaffects
height.
N. M. Davies,M. Dickson,G. Davey Smith, F.
Windmeijer,G. J. van den Berg, The effect of
education on adultmortality,health, and income:
triangulatingacrossgenetic and policy reforms
(2018), doi:10.1101/250068.
• Used samples of unrelated individuals
• Controlled for standard covariates (age, sex, PCs)
• Requires assumption that the height and BMI genetic variants are
randomly distributed across the population
• There are reasons to think this may not hold:
• Fine scale population structure (Haworth et al 2019, Abdellaoui et al 2019)
• Dynastic effects (Plomin and Bergeman 1991)
• Assortative mating (Wright 1921)
A. Abdellaoui,D.Hugh-Jones, L. Yengo, K. E. Kemper, M. G. Nivard,L. Veul, Y. Holtz, B. P. Zietsch,T. M. Frayling,N.R. Wray,J. Yang, K. J. H. Verweij, P. M. Visscher,Genetic correlates of social
stratification in GreatBritain. Nature Human Behaviour (2019),doi:10.1038/s41562-019-0757-5.
S. Haworth, R. Mitchell,L. Corbin,K. H. Wade, T. Dudding, A. Budu-Aggrey, D. Carslake,G.Hemani, L. Paternoster, G. D. Smith, N. Davies,D. J. Lawson, N. J. Timpson, Apparent latent structure
within the UK Biobank samplehas implicationsfor epidemiological analysis. Nature Communications. 10 (2019), doi:10.1038/s41467-018-08219-1.
R. Plomin,C. S. Bergeman, The nature of nurture: Genetic influenceon “environmental” measures.Behavioral and Brain Sciences. 14, 373–386 (1991).
S. Wright, Systems of Mating. III.AssortativeMatingBased on Somatic Resemblance. Genetics. 6, 144–161 (1921).
N. M. Davies,L. J. Howe, B. Brumpton, A. Havdahl,D. M. Evans, G. Davey Smith, Within family Mendelian randomization studies .Human Molecular Genetics. 28, R170–R179 (2019).
L.-D. Hwang, N. M. Davies,N. M. Warrington,D. M. Evans,Integrating Family-Based and Mendelian Randomization Designs. Cold Spring Harb Perspect Med, a039503 (2020).
1) Fine scale population structure
• Geographic or regionaldifferences in allelefrequency that relate to a trait of interest
• For example:
• People in Scotlanddrink more Irn Bru and haveadverse health outcomes.
• Some genetic variantswill also have modestly different frequencies in Scotland
• E.g. genetic variantsassociated with lactase persistence are more common in
northern areas
• This does not imply that Iru Bru causes adverse health outcomes
G. Davey Smith, D. A. Lawlor,N. J. Timpson, J.Baban, M. Kiessling,I.N. M. Day, S. Ebrahim,Lactase
persistence-related genetic variant:population substructureand health outcomes. Eur J Hum Genet.
17, 357–367 (2009).
2) Dynastic effects
• Family structure:
• dynastic effects that occur when the expression of parent’s
genotype directly affects the offspring phenotype.
• For example, if more educatedparents can afford tutoring for
their children, leadingto better educational outcomesfor their
offspring
• Parents and offspring genotypes correlate 50%
• Results in biased estimatesof the effect of exposure in the
offspring
3) Assortative mating
• Assortative mating - when individualsdo not choose their partners at random but select
someone who is more similarto them on particularcharacteristicsthan would be
expected by chance.
• Assortment on education,BMI
and height
• Causes bias in MR estimates
F. P. Hartwig, N. M. Davies,G. Davey Smith, Bias in Mendelian randomization dueto assortativemating.
Genetic Epidemiology. 42, 608–620 (2018).
Econometric methods
• Consider the following model :
𝑥 𝑘,𝑖 = 𝛾0 + 𝛾1 𝑔 𝑘,𝑖 + 𝐶 𝑘,𝑖 + 𝑓𝑘 + 𝑣 𝑘,𝑖
𝑦 𝑘,𝑖 = 𝛽0 + 𝛽1 𝑥 𝑘,𝑖 + 𝐶 𝑘,𝑖 + 𝑓𝑘 + 𝑢 𝑘,𝑖
Where:
𝑦 𝑘,𝑖 and 𝑥 𝑘,𝑖 are the outcome and exposure for individual 𝑖from family 𝑘.
𝑔 𝑘,𝑖 is a set of genetic variantsthat are associated with the exposure.
𝐶 𝑘,𝑖 is a confounder of the associationof the exposure and the outcome.
𝑓𝑘 is a family level confounder.
𝑢 𝑘,𝑖 and 𝑣 𝑘,𝑖 are random error terms.
𝛽1 is the effect of the exposure on the outcome which we wish to estimate.
This means that Mendelianrandomizationusing data from unrelatedindividualswould
produce a biased estimate of 𝛽1 due to the correlationbetween 𝑔 𝑘,𝑖,𝑗 and 𝑓𝑘.
Econometric methods
• Difference-in-differencemethod with sibling data.
• For any pair of siblings within family 𝑘, indicated 𝑘, 1 and 𝑘, 2, the genotypic difference at
genetic variant 𝑗 is:
𝛿 𝑘,𝑗 = 𝑔 𝑘,1,𝑗 − 𝑔 𝑘,2,𝑗
The associationbetween the genotypic differences and phenotypicdifferences in the
exposure, 𝑥, and outcome 𝑦, for SNP 𝑗 can be estimated via:
𝑥 𝑘,1 − 𝑥 𝑘,2
2
= 𝛾𝑗 𝛿 𝑘,𝑗
2
+ 𝑢 𝑘,𝑗
𝑦 𝑘,1 − 𝑦 𝑘,2
2
= Γ𝑗 𝛿 𝑘,𝑗
2
+ 𝑣 𝑘,𝑗
The estimated associations, 𝛾𝑗 and Γ𝑗, can be used with any summary level Mendelian
randomization estimator.
The within transformation – useful for large sample sizes.
Econometric methods
• Family fixed effect with sibling data.
• Alternatively,we can estimate the associationsusing familyfixed effects indicatedby 𝑓𝑘
for each family:
𝑥 𝑘,𝑖 = 𝛾0
+ 𝛾1,𝑗 𝑔 𝑘,𝑖,𝑗 + 𝑓𝑘 + 𝑢 𝑘,𝑖,𝑗
𝑦 𝑘,𝑖 = 𝛽0
+ Γ1 𝑔 𝑘,𝑖,𝑗 + 𝑓𝑘 + 𝑣 𝑘,𝑖,𝑗
This estimatoraccountsfor any differences between families, which includes any effect of
assortative mating or dynastic effects common to all siblings.
The estimated associations, 𝛾𝑗 and Γ𝑗, can be used with any summary level Mendelian
randomization estimator.
Econometric methods
• Adjusting for parentalgenotype with mother-father-offspringtrios data.
• The estimatesof the SNP-exposure and SNP-outcome associationsfor each child can be
adjustedfor their mother’s and father’s genotypes, indicatedby 𝑔𝑖𝑚,𝑗 and 𝑔𝑖𝑓,𝑗
respectively:
𝑥𝑖 = 𝛾0
+ 𝛾1,𝑗 𝑔𝑖,𝑗 + 𝛾2,𝑗 𝑔𝑖𝑚,𝑗 + 𝛾3,𝑗 𝑔𝑖𝑓,𝑗 + 𝑢𝑖,𝑗
𝑦𝑖 = 𝛽0
+ Γ1 𝑔𝑖,𝑗 + Γ2 𝑔𝑖𝑚,𝑗 + Γ3 𝑔𝑖𝑓,𝑗 + 𝑣𝑖,𝑗
These associationscan be used to estimate the effect of the exposure on the outcome using
summary dataMendelianrandomizationmethods.
Methods
• Simulations
• SNP-exposure r2 = 0.05
• Sample size = 10,000
• 90 independentSNPs
• Simulationinvolvesan influence of
parentalexposure influencingchild’s
confounder.
Results
• Simulations
• Bias occurs if there are dynastic effects.
I.e. if the parentsaffect the offspring
outcomes.
• However, estimatesfrom within-family
designs are less substantiallyless
powerful.
• The simulationsshow how family
structure can be exploitedto control for
the bias either using samples of siblings
or mother-father-offspring trios.
Empirical study
• Hypotheses
• What is the effect of BMI on
1. Diabetes
2. High blood pressure
3. Educational attainment
• What is the effect height on
4. Educational attainment
Data• HUNT
• HUNT > ~125,000 unique individuals(H1-3)> ~71,800 genotyped (H2-3) > ~24,000 unrelated (2nd degree)
Europeans.
• Genotyping - HumanCoreExome12 v1.0, HumanCoreExome12 v1.1 and UM HUNT Biobankv1.0
(n=516,608).
• Imputation– merged reference panel constructed from the HaplotypeReference Consortium (HRC) panel
(release version 1.1) and a local reference panel
• Empiricalstudy (HUNT+UKB)
• HUNT2 > 65,237 participated> 56,374 genotyped > 53,288 complete data > 19,492 unrelated| 28,823
siblings> 13,103 families
• UKBB > 503,317 participated> 370,180 met inclusion criteria > 33,642 siblings
Exposuresand outcomes
• Height, BMI > Education
• BMI > Diabetes, Blood pressure
Replication:23andMe 222,368 siblings
BMI and height GWAS
Clumped using r2<0.01, LD=10,000kb, to select:
• 79 SNPs associated with BMI
• 385 SNPs associated with height
BMI > Diabetes
BMI > High blood pressure
Results HUNT and UK Biobank
Results HUNT and UK Biobank
Height > Education
BMI > Education
BMI > Diabetes
BMI > High blood pressure
Results 23andMe replication (n=222,368)
Results 23andMe replication (n=222,368)
Height > Education
BMI > Education
Summary
• Meta-analysisof HUNT, UKB and 23andMe
• A 1kg/m2 increase in BMI causes:
• 0.82 (95%CI: 0.55 to 1.06) additional cases of diabetes per 100
• 1.25 (95%CI: 0.90 to 1.59) additional cases of high blood pressure per 100
• 0.00 (95%CI: -0.018 to 0.018) additional years of education (i.e. <6.6 days)
• 10cm increase in height causes
• 0.00 (95%CI: -0.015 to 0.015) additional years of education (i.e. <5.5 days)
• Very well powered estimates.
• Confirm established adverse effectsof higher BMI on health outcomes.
• There is very unlikely to be meaningful causal effect of BMI or height on
educational attainment.
Next steps: MR within families consortium
• a. Within siblings GWAS
• Runningwithin sib and within families (trio)analysis to investigate the difference in genetic associations in unrelated individuals
and related individuals across a range of traits and studies.
• b. Assortative mating over time and across countries
• Estimate assortativematingacross time and in different countries.Will require data on spouses and phenotype data.
• c. Non-inherited variants GWAS
• Estimatingdynasticand parent oforigin effects usingtrios or duos.This approach would allowus to investigate the
intergenerationaltransmission ofa range of traits.
• d. Assortative mating and obesity
• There’s been several interestingpapers thathavesuggested that the change in obesity,particularlythe increase in the variance of
BMI, could be explained byassortativemating.There havebeen some studies into this,but relativelyfewusingmolecular genetic
data.The studies involvedcould provide newevidence about this hypothesis.
Next steps: MR within families consortium
• Included studies:
• Finnish Twin Cohort
• Chinese NationalTwin Registry
• Swedish Twin Registry
• Texas Twin Project
• QIMR
• Murcia Twin Registry
• NTR
• Australian MammographicDensityTwins and Sisters Study
• Italian Twin Registry
• Minnesota Center for Twin and Family Research
• Osaka UniversityTwin Registry
• LongitudinalStudyofAging Danish Twins
• GenerationScotland
• UK Biobank
• TwinsUK
• HUNT
• Framingham Heart Study
• ALSPAC
• The HealthyTwin Study (Korea)
• TEDS
• QNTS
• Exeter Family Studyof ChildhoodHealth (EFSOCH)
• Mid-Atlantictwin reg
• MoBa
• Born in Bradford (duos)
• Long Life Family Study
• Inclusion criteria – relateds (duos,trios,siblings).
Within-families consortium
• Collaborative consortium effort for projects using
family data.
• Includes family studies and large population biobanks
(e.g. UK Biobank has ~20K sibling pairs).
• Main project: Sibling GWAS of 30+ complex traits.
• Fit conventional and within-family models for
comparison.
Sibling GWAS
• To date summary data on ~137,000 siblings, expect to reach
180,000+.
• High coverage of phenotypes although sample sizes vary.
Study Max number of siblings
UK Biobank 40,210
HUNT 38,549
Generation Scotland 19,914
Netherlands Twin Registry 4,708
FinnTwin 8,810
TEDS 4,224
China Kadoorie Biobank 13,856
Aging Danish Twins 1,172
Viking 930
Orcades 837
TwinsUK 2,806
Australian Mammographic Study 1,811
Total 137,827
Genetic association estimates decrease
Phenotype Number of SNPs Shrinkage estimate in comparison of
conventional and within-familymodels
(95% C.I.)
Height 385 9.0% (6.7%, 11.2%)
Educational attainment 53 38.7% (23.1%, 54.3%)
Ever smoking 92 17.5% (5.3%, 29.7%)
Evidence of heterogeneity across studies
Study N GWS shrinkage estimate (95% C.I.)
UK Biobank 40,068 13.1% (9.4%, 16.2%)
HUNT 37,689 0.8% (-3.3%, 4.9%)
Generation Scotland 19,904 12.4% (7.5%, 17.4%)
Meta-analysis 121,719 9.0% (6.7, 11.2%)
e.g. Height variants
Educational attainment more consistent
Study N GWS shrinkage estimate (95%
C.I.)
UK Biobank 39,531 48.1% (29.5%, 66.6%)
HUNT 32,120 29.2% (-0.2%, 58.6%)
Generation Scotland 19,589 56.2% (21.1%, 91.3%)
Meta-analysis 104,316 38.7% (23.1%, 54.3%)
MR for Health Economics
• No time, but may be of interest to health economists…
Conclusions
• Familialeffects can bias SNP-phenotype associations
• These effects can bias genetic approachessuch as Mendelian
randomization.
• We demonstratedhow family structure can be used to control
for these effects either using samples of siblingsor mother-
father-offspring trios.
• However, estimatesfrom within-familyMendelian
randomization areless precise than estimates using unrelated
individuals.
• In samples from HUNT, UK Biobankstudies and 23andMe, we
found that the effects of height and BMI on educational
attainmentalmost entirely attenuated afterallowingfor a
family fixed effects, whereas the effects of BMI on the risk of
diabetesand high bloodpressure were similar when allowing
for family effects.
MR
Davey Smith et al. 2003
Conclusions
• While allowing for family fixed effects or using difference-in-difference estimatorswill account
for dynastic effects or assortative mating, these methods will not address bias due to
violationsof the second Mendelianrandomizationassumption.
• Use these estimatorswith the summary data methods (MR-Egger, weighted median and
mode).
• Any one study is likely to be underpowered to use both within family methods and pleiotropy
robust methods.
• Therefore, a consortium of family based studies was required, this gives sufficient power to
use both within family and pleiotropyrobust methods.
• Currently running sibling GWAS in just under 200,000 siblings…. watch this space!
• https://www.biorxiv.org/content/10.1101/602516v1
Acknowledgements – co-authors
Bristol/MRC IEU
• Laurence Howe
• George DaveySmith
• Gib Hemani
• Tim Morris
• Amanda Hughes
• EleanorSanderson
• Sean Harrison
• Yoonsu Cho
• Laura Howe
University of Queensland
• David Evans
University of Pelotas
• Fernando Hartwig
23andMe Research Team
• Karl Heilbron
• AdamAuton
NTNU
• Ben Brumpton
• GunnhildÅberge Vie
• Johan Håkon Bjørngaard
• Bjørn Olav Åsvold
• Cristen Willer
• Kristian Hveem
NIPH
• Alexandra Havdahl
Vrije Universiteit Amsterdam
• Dorret I Boomsma
• Michel G Nivard
Oxford University
• FrankWindmeijer
The University of Melbourne
• John Hopper
• Shuai Li
Virginia Commonwealth University
• Michael Neale
Karolinska Institutet
• Nancy L Pedersen
University of California Riverside
• Chandra A Reynolds
University of Texas at Austin
• Elliot M Tucker-Drob
• AndrewGrotzinger
University of Virginia
• Wei-Min Chen
University of Helsinki
• Jaakko Kaprio
Acknowledgements – funding
The Medical Research Council (MRC) and the UniversityofBristol support the MRC Integrative EpidemiologyUnit [MC_UU_12013/1,
MC_UU_12013/9, MC_UU_00011/1]. NMD is supported byan Economics and Social Research Council (ESRC) Future Research
Leaders grant [ES/N000757/1] and a Norwegian Research Council Grant number 295989. JHB was funded bythe Norwegian Research
Council with grant number 295989. DME is funded by a National Health and Medical Research Council Senior Research Fellowship
(1137714). EMTD was supported byNIH grants R01AG054628 and R01HD083613, and by the Jacobs Foundation.LDH is supported by
a Career Development Award from the UK Medical Research Council (MR/M020894/1). This work is part of a project entitled ‘social
and economicconsequences of health:causal inference methods and longitudinal,intergenerationaldata’,which is part of theHealth
Foundation’s Social and EconomicValue of Health Research Programme (Award 807293). The Health Foundationis an independent
charitycommitted to bringingabout better health and healthcare for people in the UK. GAV is supported bya Norwegian Research
Council grant code 250335. CAR receives support from the NationalInstitutes ofHealth (NIH) includingR01AG060470, R01AG059329,
R01AG058068, R01AG018386, and R01AG046938. NLP receives fundingfrom the National Institutes ofHealth Grants No.
R01AG060470, R01AG059329. The Nord-TrøndelagHealth Study(The HUNT Study) is a collaborationbetween HUNT Research Center
(Faculty of Medicine and Health Sciences, NTNU,Norwegian UniversityofScience and Technology),Nord-TrøndelagCountyCouncil,
Central NorwayRegional Health Authority,and the Norwegian Institute ofPublic Health.The K.G. Jebsen Center for Genetic
Epidemiologyis funded byStiftelsen Kristian Gerhard Jebsen;Facultyof Medicine and Health Sciences, NTNU; The Liaison Committee
for education,research and innovation in CentralNorway;and the Joint Research Committee between St. Olavs Hospital and the
Faculty of Medicine and Health Sciences, NTNU.The genotypingin HUNT was financed by the National Institute ofHealth (NIH);
UniversityofMichigan; The Research Council of Norway;The Liaison Committee for education,research and innovation in Central
Norway; and the Joint Research Committee between St. Olavs Hospital and the Faculty of Medicine and Health Sciences, NTNU. JK
has been supported bythe Academyof Finland (grants 308248, 312073). RMF and RNB are supported bySir Henry Dale Fellowship
(Wellcome Trust and Royal Societygrant:WT104150). GH is supported bytheWellcome Trust and Royal Society[208806/Z/17/Z]. AH
was funded by the South-EasternNorwayRegional Health Authority,grants 2018059 and 2020022.

More Related Content

What's hot

Genetics in periodontology
Genetics in periodontologyGenetics in periodontology
Genetics in periodontologygdidhra
 
Genotype-By-Environment Interaction (VG X E) wth Examples
Genotype-By-Environment Interaction (VG X E)  wth ExamplesGenotype-By-Environment Interaction (VG X E)  wth Examples
Genotype-By-Environment Interaction (VG X E) wth ExamplesZohaib HUSSAIN
 
Perceptions of students on environmental challenge issues
Perceptions of students on environmental challenge issuesPerceptions of students on environmental challenge issues
Perceptions of students on environmental challenge issuesAlexander Decker
 
Genetic factors and periodontal disease
Genetic factors and periodontal diseaseGenetic factors and periodontal disease
Genetic factors and periodontal diseaseNavneet Randhawa
 
SEBS Convocation Program 2016
SEBS Convocation Program 2016SEBS Convocation Program 2016
SEBS Convocation Program 2016Melissa Ragusa
 
Applied computational genomics
Applied computational genomicsApplied computational genomics
Applied computational genomicsSpringer
 
Animal Hoarding_Final
Animal Hoarding_FinalAnimal Hoarding_Final
Animal Hoarding_FinalJennifer Ung
 
Social phenomena influence impact evaluation of environmental managent interv...
Social phenomena influence impact evaluation of environmental managent interv...Social phenomena influence impact evaluation of environmental managent interv...
Social phenomena influence impact evaluation of environmental managent interv...juliapgjones
 
Genotype–Environment Interaction
Genotype–Environment InteractionGenotype–Environment Interaction
Genotype–Environment InteractionRavi Adhikari
 
Science 2012-levine-907-11
Science 2012-levine-907-11Science 2012-levine-907-11
Science 2012-levine-907-11vtsiri
 
Genetic factors associated with periodontium
Genetic factors associated with periodontiumGenetic factors associated with periodontium
Genetic factors associated with periodontiumDR. OINAM MONICA DEVI
 
Elsi of gene therapy, stem cell research copy
Elsi of gene therapy, stem cell research   copyElsi of gene therapy, stem cell research   copy
Elsi of gene therapy, stem cell research copyjayaganesh13
 
ESA 2015 Baltimore, MD
ESA 2015 Baltimore, MDESA 2015 Baltimore, MD
ESA 2015 Baltimore, MDRachel Germain
 
Eckberg.Jim.CV.2014.December
Eckberg.Jim.CV.2014.DecemberEckberg.Jim.CV.2014.December
Eckberg.Jim.CV.2014.DecemberJim Eckberg
 

What's hot (20)

Genetics in periodontology
Genetics in periodontologyGenetics in periodontology
Genetics in periodontology
 
SchneiderTBAMooreRev07
SchneiderTBAMooreRev07SchneiderTBAMooreRev07
SchneiderTBAMooreRev07
 
Genotype-By-Environment Interaction (VG X E) wth Examples
Genotype-By-Environment Interaction (VG X E)  wth ExamplesGenotype-By-Environment Interaction (VG X E)  wth Examples
Genotype-By-Environment Interaction (VG X E) wth Examples
 
Gene environment interaction
Gene environment interactionGene environment interaction
Gene environment interaction
 
Perceptions of students on environmental challenge issues
Perceptions of students on environmental challenge issuesPerceptions of students on environmental challenge issues
Perceptions of students on environmental challenge issues
 
Genetic factors and periodontal disease
Genetic factors and periodontal diseaseGenetic factors and periodontal disease
Genetic factors and periodontal disease
 
SEBS Convocation Program 2016
SEBS Convocation Program 2016SEBS Convocation Program 2016
SEBS Convocation Program 2016
 
UBC BLISS talk 2016
UBC BLISS talk 2016UBC BLISS talk 2016
UBC BLISS talk 2016
 
Applied computational genomics
Applied computational genomicsApplied computational genomics
Applied computational genomics
 
Current Projects Summary
Current Projects SummaryCurrent Projects Summary
Current Projects Summary
 
Animal Hoarding_Final
Animal Hoarding_FinalAnimal Hoarding_Final
Animal Hoarding_Final
 
Social phenomena influence impact evaluation of environmental managent interv...
Social phenomena influence impact evaluation of environmental managent interv...Social phenomena influence impact evaluation of environmental managent interv...
Social phenomena influence impact evaluation of environmental managent interv...
 
Genotype–Environment Interaction
Genotype–Environment InteractionGenotype–Environment Interaction
Genotype–Environment Interaction
 
Camp Kinomaage
Camp KinomaageCamp Kinomaage
Camp Kinomaage
 
Science 2012-levine-907-11
Science 2012-levine-907-11Science 2012-levine-907-11
Science 2012-levine-907-11
 
Genetic factors associated with periodontium
Genetic factors associated with periodontiumGenetic factors associated with periodontium
Genetic factors associated with periodontium
 
Elsi of gene therapy, stem cell research copy
Elsi of gene therapy, stem cell research   copyElsi of gene therapy, stem cell research   copy
Elsi of gene therapy, stem cell research copy
 
Role of Human Genome Project in Medical Science
Role of Human Genome Project in Medical ScienceRole of Human Genome Project in Medical Science
Role of Human Genome Project in Medical Science
 
ESA 2015 Baltimore, MD
ESA 2015 Baltimore, MDESA 2015 Baltimore, MD
ESA 2015 Baltimore, MD
 
Eckberg.Jim.CV.2014.December
Eckberg.Jim.CV.2014.DecemberEckberg.Jim.CV.2014.December
Eckberg.Jim.CV.2014.December
 

Similar to Withinfamily che presentation_200609

Ross Shegog - The Secret of Seven Stones: A Game to Impact Youth Skills and P...
Ross Shegog - The Secret of Seven Stones: A Game to Impact Youth Skills and P...Ross Shegog - The Secret of Seven Stones: A Game to Impact Youth Skills and P...
Ross Shegog - The Secret of Seven Stones: A Game to Impact Youth Skills and P...SeriousGamesAssoc
 
Day2 145pm Crawford
Day2 145pm CrawfordDay2 145pm Crawford
Day2 145pm CrawfordSean Paul
 
Running head ILLICIT DRUGS
Running head ILLICIT DRUGS                                       Running head ILLICIT DRUGS
Running head ILLICIT DRUGS milissaccm
 
“The Book of Why”.ppt
“The Book of Why”.ppt“The Book of Why”.ppt
“The Book of Why”.pptSinaSalarr
 
NRNB Annual Report 2011
NRNB Annual Report 2011NRNB Annual Report 2011
NRNB Annual Report 2011Alexander Pico
 
Poster presentations.com a0-template-v5
Poster presentations.com a0-template-v5Poster presentations.com a0-template-v5
Poster presentations.com a0-template-v5Áine Mc Kenna
 
Biomedical Informatics 706: Precision Medicine with exposures
Biomedical Informatics 706: Precision Medicine with exposuresBiomedical Informatics 706: Precision Medicine with exposures
Biomedical Informatics 706: Precision Medicine with exposuresChirag Patel
 
Northcutt Publications
Northcutt PublicationsNorthcutt Publications
Northcutt PublicationsJo Northcutt
 
Human Clinical Relevance of Developmental and Reproductive Toxicology and Non...
Human Clinical Relevance of Developmental and Reproductive Toxicology and Non...Human Clinical Relevance of Developmental and Reproductive Toxicology and Non...
Human Clinical Relevance of Developmental and Reproductive Toxicology and Non...Joseph Holson
 
Original ArticleAre there vocal cues to human developmenta.docx
Original ArticleAre there vocal cues to human developmenta.docxOriginal ArticleAre there vocal cues to human developmenta.docx
Original ArticleAre there vocal cues to human developmenta.docxvannagoforth
 
Original ArticleAre there vocal cues to human developmenta.docx
Original ArticleAre there vocal cues to human developmenta.docxOriginal ArticleAre there vocal cues to human developmenta.docx
Original ArticleAre there vocal cues to human developmenta.docxhoney690131
 
presentation pop genetics 23-24.pptx
presentation pop genetics 23-24.pptxpresentation pop genetics 23-24.pptx
presentation pop genetics 23-24.pptxAlamgirmunj
 
Repurposing large datasets to dissect exposomic (and genomic) contributions i...
Repurposing large datasets to dissect exposomic (and genomic) contributions i...Repurposing large datasets to dissect exposomic (and genomic) contributions i...
Repurposing large datasets to dissect exposomic (and genomic) contributions i...Chirag Patel
 
Genetics research for society and global understanding - Myles Axton
Genetics research for society and global understanding - Myles AxtonGenetics research for society and global understanding - Myles Axton
Genetics research for society and global understanding - Myles AxtonHuman Variome Project
 
Why Life is Difficult, and What We MIght Do About It
Why Life is Difficult, and What We MIght Do About ItWhy Life is Difficult, and What We MIght Do About It
Why Life is Difficult, and What We MIght Do About ItAnita de Waard
 
Intro to Biomedical Informatics 701
Intro to Biomedical Informatics 701 Intro to Biomedical Informatics 701
Intro to Biomedical Informatics 701 Chirag Patel
 
Mandatory Reporting and Neglect: Impacts and Issues
Mandatory Reporting and Neglect: Impacts and IssuesMandatory Reporting and Neglect: Impacts and Issues
Mandatory Reporting and Neglect: Impacts and IssuesBASPCAN
 

Similar to Withinfamily che presentation_200609 (20)

Ross Shegog - The Secret of Seven Stones: A Game to Impact Youth Skills and P...
Ross Shegog - The Secret of Seven Stones: A Game to Impact Youth Skills and P...Ross Shegog - The Secret of Seven Stones: A Game to Impact Youth Skills and P...
Ross Shegog - The Secret of Seven Stones: A Game to Impact Youth Skills and P...
 
Gass2003
Gass2003Gass2003
Gass2003
 
Day2 145pm Crawford
Day2 145pm CrawfordDay2 145pm Crawford
Day2 145pm Crawford
 
Running head ILLICIT DRUGS
Running head ILLICIT DRUGS                                       Running head ILLICIT DRUGS
Running head ILLICIT DRUGS
 
“The Book of Why”.ppt
“The Book of Why”.ppt“The Book of Why”.ppt
“The Book of Why”.ppt
 
NRNB Annual Report 2011
NRNB Annual Report 2011NRNB Annual Report 2011
NRNB Annual Report 2011
 
Poster presentations.com a0-template-v5
Poster presentations.com a0-template-v5Poster presentations.com a0-template-v5
Poster presentations.com a0-template-v5
 
Biomedical Informatics 706: Precision Medicine with exposures
Biomedical Informatics 706: Precision Medicine with exposuresBiomedical Informatics 706: Precision Medicine with exposures
Biomedical Informatics 706: Precision Medicine with exposures
 
Northcutt Publications
Northcutt PublicationsNorthcutt Publications
Northcutt Publications
 
Human Clinical Relevance of Developmental and Reproductive Toxicology and Non...
Human Clinical Relevance of Developmental and Reproductive Toxicology and Non...Human Clinical Relevance of Developmental and Reproductive Toxicology and Non...
Human Clinical Relevance of Developmental and Reproductive Toxicology and Non...
 
Original ArticleAre there vocal cues to human developmenta.docx
Original ArticleAre there vocal cues to human developmenta.docxOriginal ArticleAre there vocal cues to human developmenta.docx
Original ArticleAre there vocal cues to human developmenta.docx
 
Original ArticleAre there vocal cues to human developmenta.docx
Original ArticleAre there vocal cues to human developmenta.docxOriginal ArticleAre there vocal cues to human developmenta.docx
Original ArticleAre there vocal cues to human developmenta.docx
 
presentation pop genetics 23-24.pptx
presentation pop genetics 23-24.pptxpresentation pop genetics 23-24.pptx
presentation pop genetics 23-24.pptx
 
Repurposing large datasets to dissect exposomic (and genomic) contributions i...
Repurposing large datasets to dissect exposomic (and genomic) contributions i...Repurposing large datasets to dissect exposomic (and genomic) contributions i...
Repurposing large datasets to dissect exposomic (and genomic) contributions i...
 
Genetics research for society and global understanding - Myles Axton
Genetics research for society and global understanding - Myles AxtonGenetics research for society and global understanding - Myles Axton
Genetics research for society and global understanding - Myles Axton
 
Why Life is Difficult, and What We MIght Do About It
Why Life is Difficult, and What We MIght Do About ItWhy Life is Difficult, and What We MIght Do About It
Why Life is Difficult, and What We MIght Do About It
 
Types of bias
Types of biasTypes of bias
Types of bias
 
Intro to Biomedical Informatics 701
Intro to Biomedical Informatics 701 Intro to Biomedical Informatics 701
Intro to Biomedical Informatics 701
 
Mandatory Reporting and Neglect: Impacts and Issues
Mandatory Reporting and Neglect: Impacts and IssuesMandatory Reporting and Neglect: Impacts and Issues
Mandatory Reporting and Neglect: Impacts and Issues
 
poster
posterposter
poster
 

More from cheweb1

The value of Value of Information (VoI): When and how to use simpler or heuri...
The value of Value of Information (VoI): When and how to use simpler or heuri...The value of Value of Information (VoI): When and how to use simpler or heuri...
The value of Value of Information (VoI): When and how to use simpler or heuri...cheweb1
 
Dynamic survival models for predicting the future in health technology assess...
Dynamic survival models for predicting the future in health technology assess...Dynamic survival models for predicting the future in health technology assess...
Dynamic survival models for predicting the future in health technology assess...cheweb1
 
Healthy Minds: A Randomised Controlled Trial to Evaluate PHSE Curriculum Deve...
Healthy Minds: A Randomised Controlled Trial to Evaluate PHSE Curriculum Deve...Healthy Minds: A Randomised Controlled Trial to Evaluate PHSE Curriculum Deve...
Healthy Minds: A Randomised Controlled Trial to Evaluate PHSE Curriculum Deve...cheweb1
 
Valuation in health economics: Reflections of a UK health economist… and patient
Valuation in health economics: Reflections of a UK health economist… and patientValuation in health economics: Reflections of a UK health economist… and patient
Valuation in health economics: Reflections of a UK health economist… and patientcheweb1
 
Health Research Authority Approval: Information for Sponsors
Health Research Authority Approval: Information for SponsorsHealth Research Authority Approval: Information for Sponsors
Health Research Authority Approval: Information for Sponsorscheweb1
 
Modeling the cost effectiveness of two big league pay-for-performance policies
Modeling the cost effectiveness of two big league pay-for-performance policiesModeling the cost effectiveness of two big league pay-for-performance policies
Modeling the cost effectiveness of two big league pay-for-performance policiescheweb1
 
Baker what to do when people disagree che york seminar jan 2019 v2
Baker what to do when people disagree che york seminar jan 2019 v2Baker what to do when people disagree che york seminar jan 2019 v2
Baker what to do when people disagree che york seminar jan 2019 v2cheweb1
 
The longest-lasting, most popular, and yet most thoroughly discredited idea i...
The longest-lasting, most popular, and yet most thoroughly discredited idea i...The longest-lasting, most popular, and yet most thoroughly discredited idea i...
The longest-lasting, most popular, and yet most thoroughly discredited idea i...cheweb1
 
Cost-effectiveness of diagnosis: tests, pay-offs and uncertainties
Cost-effectiveness of diagnosis: tests, pay-offs and uncertaintiesCost-effectiveness of diagnosis: tests, pay-offs and uncertainties
Cost-effectiveness of diagnosis: tests, pay-offs and uncertaintiescheweb1
 
Insights from actuarial science into HTA: Building joint models of random qua...
Insights from actuarial science into HTA: Building joint models of random qua...Insights from actuarial science into HTA: Building joint models of random qua...
Insights from actuarial science into HTA: Building joint models of random qua...cheweb1
 
The implications of parameter independence in probabilistic sensitivity analy...
The implications of parameter independence in probabilistic sensitivity analy...The implications of parameter independence in probabilistic sensitivity analy...
The implications of parameter independence in probabilistic sensitivity analy...cheweb1
 
Adjusting for treatment switching in randomised controlled trials
Adjusting for treatment switching in randomised controlled trialsAdjusting for treatment switching in randomised controlled trials
Adjusting for treatment switching in randomised controlled trialscheweb1
 
Discounting future healthcare costs and benefits (part 2)
Discounting future healthcare costs and benefits (part 2)Discounting future healthcare costs and benefits (part 2)
Discounting future healthcare costs and benefits (part 2)cheweb1
 
Discounting future healthcare costs and benefits(Part 1)
Discounting future healthcare costs and benefits(Part 1)Discounting future healthcare costs and benefits(Part 1)
Discounting future healthcare costs and benefits(Part 1)cheweb1
 
The reference ICER for the Australian health system: estimation and barriers ...
The reference ICER for the Australian health system: estimation and barriers ...The reference ICER for the Australian health system: estimation and barriers ...
The reference ICER for the Australian health system: estimation and barriers ...cheweb1
 
Valuing paediatric preference-based measures: using a discrete choice experim...
Valuing paediatric preference-based measures: using a discrete choice experim...Valuing paediatric preference-based measures: using a discrete choice experim...
Valuing paediatric preference-based measures: using a discrete choice experim...cheweb1
 
Does transfer to intensive care units reduce mortality for deteriorating ward...
Does transfer to intensive care units reduce mortality for deteriorating ward...Does transfer to intensive care units reduce mortality for deteriorating ward...
Does transfer to intensive care units reduce mortality for deteriorating ward...cheweb1
 
Economic evaluation of changes to the organisation and delivery of health ser...
Economic evaluation of changes to the organisation and delivery of health ser...Economic evaluation of changes to the organisation and delivery of health ser...
Economic evaluation of changes to the organisation and delivery of health ser...cheweb1
 
Quantifying the added societal value of public health interventions in reduci...
Quantifying the added societal value of public health interventions in reduci...Quantifying the added societal value of public health interventions in reduci...
Quantifying the added societal value of public health interventions in reduci...cheweb1
 
Population-adjusted treatment comparisons: estimates based on MAIC (Matching-...
Population-adjusted treatment comparisons: estimates based on MAIC (Matching-...Population-adjusted treatment comparisons: estimates based on MAIC (Matching-...
Population-adjusted treatment comparisons: estimates based on MAIC (Matching-...cheweb1
 

More from cheweb1 (20)

The value of Value of Information (VoI): When and how to use simpler or heuri...
The value of Value of Information (VoI): When and how to use simpler or heuri...The value of Value of Information (VoI): When and how to use simpler or heuri...
The value of Value of Information (VoI): When and how to use simpler or heuri...
 
Dynamic survival models for predicting the future in health technology assess...
Dynamic survival models for predicting the future in health technology assess...Dynamic survival models for predicting the future in health technology assess...
Dynamic survival models for predicting the future in health technology assess...
 
Healthy Minds: A Randomised Controlled Trial to Evaluate PHSE Curriculum Deve...
Healthy Minds: A Randomised Controlled Trial to Evaluate PHSE Curriculum Deve...Healthy Minds: A Randomised Controlled Trial to Evaluate PHSE Curriculum Deve...
Healthy Minds: A Randomised Controlled Trial to Evaluate PHSE Curriculum Deve...
 
Valuation in health economics: Reflections of a UK health economist… and patient
Valuation in health economics: Reflections of a UK health economist… and patientValuation in health economics: Reflections of a UK health economist… and patient
Valuation in health economics: Reflections of a UK health economist… and patient
 
Health Research Authority Approval: Information for Sponsors
Health Research Authority Approval: Information for SponsorsHealth Research Authority Approval: Information for Sponsors
Health Research Authority Approval: Information for Sponsors
 
Modeling the cost effectiveness of two big league pay-for-performance policies
Modeling the cost effectiveness of two big league pay-for-performance policiesModeling the cost effectiveness of two big league pay-for-performance policies
Modeling the cost effectiveness of two big league pay-for-performance policies
 
Baker what to do when people disagree che york seminar jan 2019 v2
Baker what to do when people disagree che york seminar jan 2019 v2Baker what to do when people disagree che york seminar jan 2019 v2
Baker what to do when people disagree che york seminar jan 2019 v2
 
The longest-lasting, most popular, and yet most thoroughly discredited idea i...
The longest-lasting, most popular, and yet most thoroughly discredited idea i...The longest-lasting, most popular, and yet most thoroughly discredited idea i...
The longest-lasting, most popular, and yet most thoroughly discredited idea i...
 
Cost-effectiveness of diagnosis: tests, pay-offs and uncertainties
Cost-effectiveness of diagnosis: tests, pay-offs and uncertaintiesCost-effectiveness of diagnosis: tests, pay-offs and uncertainties
Cost-effectiveness of diagnosis: tests, pay-offs and uncertainties
 
Insights from actuarial science into HTA: Building joint models of random qua...
Insights from actuarial science into HTA: Building joint models of random qua...Insights from actuarial science into HTA: Building joint models of random qua...
Insights from actuarial science into HTA: Building joint models of random qua...
 
The implications of parameter independence in probabilistic sensitivity analy...
The implications of parameter independence in probabilistic sensitivity analy...The implications of parameter independence in probabilistic sensitivity analy...
The implications of parameter independence in probabilistic sensitivity analy...
 
Adjusting for treatment switching in randomised controlled trials
Adjusting for treatment switching in randomised controlled trialsAdjusting for treatment switching in randomised controlled trials
Adjusting for treatment switching in randomised controlled trials
 
Discounting future healthcare costs and benefits (part 2)
Discounting future healthcare costs and benefits (part 2)Discounting future healthcare costs and benefits (part 2)
Discounting future healthcare costs and benefits (part 2)
 
Discounting future healthcare costs and benefits(Part 1)
Discounting future healthcare costs and benefits(Part 1)Discounting future healthcare costs and benefits(Part 1)
Discounting future healthcare costs and benefits(Part 1)
 
The reference ICER for the Australian health system: estimation and barriers ...
The reference ICER for the Australian health system: estimation and barriers ...The reference ICER for the Australian health system: estimation and barriers ...
The reference ICER for the Australian health system: estimation and barriers ...
 
Valuing paediatric preference-based measures: using a discrete choice experim...
Valuing paediatric preference-based measures: using a discrete choice experim...Valuing paediatric preference-based measures: using a discrete choice experim...
Valuing paediatric preference-based measures: using a discrete choice experim...
 
Does transfer to intensive care units reduce mortality for deteriorating ward...
Does transfer to intensive care units reduce mortality for deteriorating ward...Does transfer to intensive care units reduce mortality for deteriorating ward...
Does transfer to intensive care units reduce mortality for deteriorating ward...
 
Economic evaluation of changes to the organisation and delivery of health ser...
Economic evaluation of changes to the organisation and delivery of health ser...Economic evaluation of changes to the organisation and delivery of health ser...
Economic evaluation of changes to the organisation and delivery of health ser...
 
Quantifying the added societal value of public health interventions in reduci...
Quantifying the added societal value of public health interventions in reduci...Quantifying the added societal value of public health interventions in reduci...
Quantifying the added societal value of public health interventions in reduci...
 
Population-adjusted treatment comparisons: estimates based on MAIC (Matching-...
Population-adjusted treatment comparisons: estimates based on MAIC (Matching-...Population-adjusted treatment comparisons: estimates based on MAIC (Matching-...
Population-adjusted treatment comparisons: estimates based on MAIC (Matching-...
 

Recently uploaded

Call Girls Hosur Just Call 7001305949 Top Class Call Girl Service Available
Call Girls Hosur Just Call 7001305949 Top Class Call Girl Service AvailableCall Girls Hosur Just Call 7001305949 Top Class Call Girl Service Available
Call Girls Hosur Just Call 7001305949 Top Class Call Girl Service Availablenarwatsonia7
 
Russian Call Girls Chickpet - 7001305949 Booking and charges genuine rate for...
Russian Call Girls Chickpet - 7001305949 Booking and charges genuine rate for...Russian Call Girls Chickpet - 7001305949 Booking and charges genuine rate for...
Russian Call Girls Chickpet - 7001305949 Booking and charges genuine rate for...narwatsonia7
 
Glomerular Filtration and determinants of glomerular filtration .pptx
Glomerular Filtration and  determinants of glomerular filtration .pptxGlomerular Filtration and  determinants of glomerular filtration .pptx
Glomerular Filtration and determinants of glomerular filtration .pptxDr.Nusrat Tariq
 
call girls in munirka DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️
call girls in munirka  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️call girls in munirka  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️
call girls in munirka DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️saminamagar
 
Russian Call Girl Brookfield - 7001305949 Escorts Service 50% Off with Cash O...
Russian Call Girl Brookfield - 7001305949 Escorts Service 50% Off with Cash O...Russian Call Girl Brookfield - 7001305949 Escorts Service 50% Off with Cash O...
Russian Call Girl Brookfield - 7001305949 Escorts Service 50% Off with Cash O...narwatsonia7
 
Russian Call Girls Gunjur Mugalur Road : 7001305949 High Profile Model Escort...
Russian Call Girls Gunjur Mugalur Road : 7001305949 High Profile Model Escort...Russian Call Girls Gunjur Mugalur Road : 7001305949 High Profile Model Escort...
Russian Call Girls Gunjur Mugalur Road : 7001305949 High Profile Model Escort...narwatsonia7
 
Hematology and Immunology - Leukocytes Functions
Hematology and Immunology - Leukocytes FunctionsHematology and Immunology - Leukocytes Functions
Hematology and Immunology - Leukocytes FunctionsMedicoseAcademics
 
Call Girls Service Nandiambakkam | 7001305949 At Low Cost Cash Payment Booking
Call Girls Service Nandiambakkam | 7001305949 At Low Cost Cash Payment BookingCall Girls Service Nandiambakkam | 7001305949 At Low Cost Cash Payment Booking
Call Girls Service Nandiambakkam | 7001305949 At Low Cost Cash Payment BookingNehru place Escorts
 
High Profile Call Girls Kodigehalli - 7001305949 Escorts Service with Real Ph...
High Profile Call Girls Kodigehalli - 7001305949 Escorts Service with Real Ph...High Profile Call Girls Kodigehalli - 7001305949 Escorts Service with Real Ph...
High Profile Call Girls Kodigehalli - 7001305949 Escorts Service with Real Ph...narwatsonia7
 
Call Girls Service in Virugambakkam - 7001305949 | 24x7 Service Available Nea...
Call Girls Service in Virugambakkam - 7001305949 | 24x7 Service Available Nea...Call Girls Service in Virugambakkam - 7001305949 | 24x7 Service Available Nea...
Call Girls Service in Virugambakkam - 7001305949 | 24x7 Service Available Nea...Nehru place Escorts
 
High Profile Call Girls Jaipur Vani 8445551418 Independent Escort Service Jaipur
High Profile Call Girls Jaipur Vani 8445551418 Independent Escort Service JaipurHigh Profile Call Girls Jaipur Vani 8445551418 Independent Escort Service Jaipur
High Profile Call Girls Jaipur Vani 8445551418 Independent Escort Service Jaipurparulsinha
 
High Profile Call Girls Mavalli - 7001305949 | 24x7 Service Available Near Me
High Profile Call Girls Mavalli - 7001305949 | 24x7 Service Available Near MeHigh Profile Call Girls Mavalli - 7001305949 | 24x7 Service Available Near Me
High Profile Call Girls Mavalli - 7001305949 | 24x7 Service Available Near Menarwatsonia7
 
Call Girls Thane Just Call 9910780858 Get High Class Call Girls Service
Call Girls Thane Just Call 9910780858 Get High Class Call Girls ServiceCall Girls Thane Just Call 9910780858 Get High Class Call Girls Service
Call Girls Thane Just Call 9910780858 Get High Class Call Girls Servicesonalikaur4
 
Call Girls ITPL Just Call 7001305949 Top Class Call Girl Service Available
Call Girls ITPL Just Call 7001305949 Top Class Call Girl Service AvailableCall Girls ITPL Just Call 7001305949 Top Class Call Girl Service Available
Call Girls ITPL Just Call 7001305949 Top Class Call Girl Service Availablenarwatsonia7
 
call girls in green park DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️
call girls in green park  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️call girls in green park  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️
call girls in green park DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️saminamagar
 
Air-Hostess Call Girls Madambakkam - Phone No 7001305949 For Ultimate Sexual ...
Air-Hostess Call Girls Madambakkam - Phone No 7001305949 For Ultimate Sexual ...Air-Hostess Call Girls Madambakkam - Phone No 7001305949 For Ultimate Sexual ...
Air-Hostess Call Girls Madambakkam - Phone No 7001305949 For Ultimate Sexual ...Ahmedabad Escorts
 
Call Girls Hsr Layout Just Call 7001305949 Top Class Call Girl Service Available
Call Girls Hsr Layout Just Call 7001305949 Top Class Call Girl Service AvailableCall Girls Hsr Layout Just Call 7001305949 Top Class Call Girl Service Available
Call Girls Hsr Layout Just Call 7001305949 Top Class Call Girl Service Availablenarwatsonia7
 
call girls in Connaught Place DELHI 🔝 >༒9540349809 🔝 genuine Escort Service ...
call girls in Connaught Place  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service ...call girls in Connaught Place  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service ...
call girls in Connaught Place DELHI 🔝 >༒9540349809 🔝 genuine Escort Service ...saminamagar
 
Call Girls Frazer Town Just Call 7001305949 Top Class Call Girl Service Avail...
Call Girls Frazer Town Just Call 7001305949 Top Class Call Girl Service Avail...Call Girls Frazer Town Just Call 7001305949 Top Class Call Girl Service Avail...
Call Girls Frazer Town Just Call 7001305949 Top Class Call Girl Service Avail...narwatsonia7
 
97111 47426 Call Girls In Delhi MUNIRKAA
97111 47426 Call Girls In Delhi MUNIRKAA97111 47426 Call Girls In Delhi MUNIRKAA
97111 47426 Call Girls In Delhi MUNIRKAAjennyeacort
 

Recently uploaded (20)

Call Girls Hosur Just Call 7001305949 Top Class Call Girl Service Available
Call Girls Hosur Just Call 7001305949 Top Class Call Girl Service AvailableCall Girls Hosur Just Call 7001305949 Top Class Call Girl Service Available
Call Girls Hosur Just Call 7001305949 Top Class Call Girl Service Available
 
Russian Call Girls Chickpet - 7001305949 Booking and charges genuine rate for...
Russian Call Girls Chickpet - 7001305949 Booking and charges genuine rate for...Russian Call Girls Chickpet - 7001305949 Booking and charges genuine rate for...
Russian Call Girls Chickpet - 7001305949 Booking and charges genuine rate for...
 
Glomerular Filtration and determinants of glomerular filtration .pptx
Glomerular Filtration and  determinants of glomerular filtration .pptxGlomerular Filtration and  determinants of glomerular filtration .pptx
Glomerular Filtration and determinants of glomerular filtration .pptx
 
call girls in munirka DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️
call girls in munirka  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️call girls in munirka  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️
call girls in munirka DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️
 
Russian Call Girl Brookfield - 7001305949 Escorts Service 50% Off with Cash O...
Russian Call Girl Brookfield - 7001305949 Escorts Service 50% Off with Cash O...Russian Call Girl Brookfield - 7001305949 Escorts Service 50% Off with Cash O...
Russian Call Girl Brookfield - 7001305949 Escorts Service 50% Off with Cash O...
 
Russian Call Girls Gunjur Mugalur Road : 7001305949 High Profile Model Escort...
Russian Call Girls Gunjur Mugalur Road : 7001305949 High Profile Model Escort...Russian Call Girls Gunjur Mugalur Road : 7001305949 High Profile Model Escort...
Russian Call Girls Gunjur Mugalur Road : 7001305949 High Profile Model Escort...
 
Hematology and Immunology - Leukocytes Functions
Hematology and Immunology - Leukocytes FunctionsHematology and Immunology - Leukocytes Functions
Hematology and Immunology - Leukocytes Functions
 
Call Girls Service Nandiambakkam | 7001305949 At Low Cost Cash Payment Booking
Call Girls Service Nandiambakkam | 7001305949 At Low Cost Cash Payment BookingCall Girls Service Nandiambakkam | 7001305949 At Low Cost Cash Payment Booking
Call Girls Service Nandiambakkam | 7001305949 At Low Cost Cash Payment Booking
 
High Profile Call Girls Kodigehalli - 7001305949 Escorts Service with Real Ph...
High Profile Call Girls Kodigehalli - 7001305949 Escorts Service with Real Ph...High Profile Call Girls Kodigehalli - 7001305949 Escorts Service with Real Ph...
High Profile Call Girls Kodigehalli - 7001305949 Escorts Service with Real Ph...
 
Call Girls Service in Virugambakkam - 7001305949 | 24x7 Service Available Nea...
Call Girls Service in Virugambakkam - 7001305949 | 24x7 Service Available Nea...Call Girls Service in Virugambakkam - 7001305949 | 24x7 Service Available Nea...
Call Girls Service in Virugambakkam - 7001305949 | 24x7 Service Available Nea...
 
High Profile Call Girls Jaipur Vani 8445551418 Independent Escort Service Jaipur
High Profile Call Girls Jaipur Vani 8445551418 Independent Escort Service JaipurHigh Profile Call Girls Jaipur Vani 8445551418 Independent Escort Service Jaipur
High Profile Call Girls Jaipur Vani 8445551418 Independent Escort Service Jaipur
 
High Profile Call Girls Mavalli - 7001305949 | 24x7 Service Available Near Me
High Profile Call Girls Mavalli - 7001305949 | 24x7 Service Available Near MeHigh Profile Call Girls Mavalli - 7001305949 | 24x7 Service Available Near Me
High Profile Call Girls Mavalli - 7001305949 | 24x7 Service Available Near Me
 
Call Girls Thane Just Call 9910780858 Get High Class Call Girls Service
Call Girls Thane Just Call 9910780858 Get High Class Call Girls ServiceCall Girls Thane Just Call 9910780858 Get High Class Call Girls Service
Call Girls Thane Just Call 9910780858 Get High Class Call Girls Service
 
Call Girls ITPL Just Call 7001305949 Top Class Call Girl Service Available
Call Girls ITPL Just Call 7001305949 Top Class Call Girl Service AvailableCall Girls ITPL Just Call 7001305949 Top Class Call Girl Service Available
Call Girls ITPL Just Call 7001305949 Top Class Call Girl Service Available
 
call girls in green park DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️
call girls in green park  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️call girls in green park  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️
call girls in green park DELHI 🔝 >༒9540349809 🔝 genuine Escort Service 🔝✔️✔️
 
Air-Hostess Call Girls Madambakkam - Phone No 7001305949 For Ultimate Sexual ...
Air-Hostess Call Girls Madambakkam - Phone No 7001305949 For Ultimate Sexual ...Air-Hostess Call Girls Madambakkam - Phone No 7001305949 For Ultimate Sexual ...
Air-Hostess Call Girls Madambakkam - Phone No 7001305949 For Ultimate Sexual ...
 
Call Girls Hsr Layout Just Call 7001305949 Top Class Call Girl Service Available
Call Girls Hsr Layout Just Call 7001305949 Top Class Call Girl Service AvailableCall Girls Hsr Layout Just Call 7001305949 Top Class Call Girl Service Available
Call Girls Hsr Layout Just Call 7001305949 Top Class Call Girl Service Available
 
call girls in Connaught Place DELHI 🔝 >༒9540349809 🔝 genuine Escort Service ...
call girls in Connaught Place  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service ...call girls in Connaught Place  DELHI 🔝 >༒9540349809 🔝 genuine Escort Service ...
call girls in Connaught Place DELHI 🔝 >༒9540349809 🔝 genuine Escort Service ...
 
Call Girls Frazer Town Just Call 7001305949 Top Class Call Girl Service Avail...
Call Girls Frazer Town Just Call 7001305949 Top Class Call Girl Service Avail...Call Girls Frazer Town Just Call 7001305949 Top Class Call Girl Service Avail...
Call Girls Frazer Town Just Call 7001305949 Top Class Call Girl Service Avail...
 
97111 47426 Call Girls In Delhi MUNIRKAA
97111 47426 Call Girls In Delhi MUNIRKAA97111 47426 Call Girls In Delhi MUNIRKAA
97111 47426 Call Girls In Delhi MUNIRKAA
 

Withinfamily che presentation_200609

  • 1. Within-family Mendelian Randomization In press at NatureCommunications York University 12th June 2020 Neil Davies, neil.davies@bristol.ac.uk Ben Brumpton*1,2,3, Eleanor Sanderson2,4, Fernando Hartwig2,5, Sean Harrison2,4, Gunnhild Åberge Vie1, Yoonsu Cho2,4, Laura D Howe2,4, Amanda Hughes2,4, Dorret I Boomsa6, Alexandra Havdahl2,7,8, John Hopper9, Michael Neale10, Michel G Nivard6, Nancy L Pedersen11, ChandraRenyolds12, Elliot M Tucker- Drob13, Andrew Grotzinger,13 Laruence Howe2,4, Tim Morris2,4, Shuai Li14,15, MR within-family Consortium, Wei-Min Chen16, Johan Håkon Bjørngaard1,KristianHveem1, Cristen Willer17,18,19, David M Evans2,20, Jaakko Kaprio21,22, George Davey Smith2,4,^, Bjørn Olav Åsvold1,23^, Gibran Hemani2,4,^, Neil M Davies2,4,^ 1 K.G.Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, NTNU, Norwegian University of Science and Technology, Norway. 2 Medical Research Council IntegrativeEpidemiology Unit, University of Bristol,BS8 2BN,United Kingdom. 3 Clinic of Thoracic and OccupationalMedicine, St. Olavs Hospital, Trondheim University Hospital. https://www.biorxiv.org/content/10.1101/602516v1
  • 2. • Questions very welcome! • Please feel free to interrupt at any time, I’m happy to clarify, discuss, debate, whatever.
  • 3. Overview 1. Introduction to Mendelian randomization (genetic IVs) 2. Family based designs 3. Simulations 4. Empirical example: The effects of height and BMI on education, blood pressure and diabetes 5. The Sibling GWAS
  • 4. Why classical epidemiology failed A step-by-step guide to classical epidemiology 1. Get sample (e.g. civil servants, doctors, women) 2. Measure risk factor 3. Either estimate • Cross sectional associations with disease • Longitudinal associations with disease 4. Publish in NEJM 5. Spend $$$ in RCT, -> fails to replicate 6. Pick another risk factor
  • 5. Does taking vit E reduce risk of coronary heart disease?
  • 6. RCTs did not replicate this finding Why? Endogeneity, confounding, and measurement error. G. Davey Smith, M. V. Holmes, N. M. Davies,S. Ebrahim,Mendel’s laws,Mendelian randomization and causal inferencein observational data:substantiveand nomenclatural issues.EurJ Epidemiol. 35, 99–111 (2020).
  • 7. Econometrics to the rescue? • Classic epi – adjust measure confounders • Impossible to fully measure covariates • Need to estimate causal effects even if there are unmeasured confounders of the exposure-outcome relationship • Instrumental variables and natural experiments could help
  • 8. The instrumental variable assumptions The instrumentalvariableassumptions: 1. Relevance:The instrument associateswith the exposure of interest 2. Independence:There are no confoundersof the instrument-outcomeassociation 3. Exclusion restriction: The instrument only affects the outcome via the exposure P. Wright, Letter from Philip Wrightto Sewall Wright, 4 March 1926., (availableat https://ase.tufts.edu/economics/documents/wrightPhilipAndSewall.pdf). J. D. Angrist, G. W. Imbens, D. B. Rubin,Identification of causal effects usinginstrumental variables.JAm Stat Assoc. 91, 444–45 (1996). J. Pearl,Causality: models, reasoning, and inference (Cambridge University Press,Cambridge,U.K. ; New York, 2000). M. A. Hernán, J. Robins,Instruments for causal inference:an epidemiologist’s dream?Epidemiology. 17, 360–372 (2006). and many, many others…… Instrument Exposure Outcome Confounder
  • 9. Mendelian randomization=Genetic lotteries • DNA is randomly transmitted from parents to offspring • Germline DNA is not affected by the environment • The human genome: • ~3 billion base pairs (A, C, G, or T) • Over 650 million variants • 15 million common variants (minor allele frequency >1%) • Sequencing vs genotyping M. Katan,Apoupoprotein E Isoforms,Serum Cholesterol,And Cancer. The Lancet. 327, 507–508 (1986).
  • 10. Random genetic inheritance • Genetic variants • Are a point in the genome that differs across the population • A common type of variant is single nucleotide polymorphisms (SNPs) • SNPs have one or more alleles • A conception offspring inherit at each SNP • One of mother’s two alleles • One of father’s two alleles G. Davey Smith, S. Ebrahim,“Mendelian randomization”:can genetic epidemiology contribute to understandingenvironmental determinants of disease? Int J Epidemiol. 32, 1–22 (2003).
  • 11. Nature’s randomized trials G. Davey Smith, S. Ebrahim,What can mendelian randomisation tell us aboutmodifiablebehavioural and environmental exposures ? BMJ. 330, 1076–1079 (2005).
  • 12. Genetic variants as instrumental variables The instrumentalvariableassumptions: 1. Relevance:SNPs associate with risk factors 2. Independence:SNPs are randomly allocatedat conception 3. Exclusion restriction: SNPs tend to be inherited independentlyof SNPs for other traits (Mendel’s law of independentassortment) G. Davey Smith, D. A. Lawlor,R. Harbord,N. Timpson, I. Day,S. Ebrahim,Clustered environments and randomized genes: a fundamental distinction between conventional and genetic epidemiology.PLoS Med. 4, e352 (2007). BMI SNPs BMI Education Confounder
  • 13. Mendelian randomization: a step-by-step guide 1. Define hypothesis • E.g. does BMI affect educational attainment? 2. Select genetic variants from GWAS • which SNPs associate with BMI? Clump + threshold at p<5×10-08 3. Estimate effect of exposure on outcome • One sample IV estimators, 2SLS, structural mean models, weak instrument robust methods, polygenic scores • Two-sample instrumentalvariable estimators • Pleiotropy robust methods - IVW, MR-Egger, weighted median 4. Sensitivity analyses N. M. Davies,M. V. Holmes, G. Davey Smith, Reading Mendelian randomisation studies:a guide,glossary,and checklist for clinicians.BMJ, k601 (2018). G. Hemani, J. Bowden, G. Davey Smith, Evaluatingthe potential roleof pleiotropy in Mendelian randomization studies. Human Molecular Genetics. 27, R195–R208 (2018).
  • 14. Genome-wide association studies (GWAS) • Estimate association between phenotype and SNPs across the genome • Up to 40 million variants • Linear or logistic regression • Covariates • Sex • Age • Principal componentsof genetic variation (PCs) • Samples of unrelated individuals (less than 3rd degree relatives) • Large databases of GWAS estimates available (e.g. MR-Base) G. Hemani, J. Zheng, B. Elsworth,K. H. Wade, V. Haberland,D. Baird,C. Laurin,S. Burgess, J. Bowden, R. Langdon, V. Y. Tan, J. Yarmolinsky,H.A. Shihab,N. J. Timpson,D. M. Evans,C. Relton, R. M. Martin,G. Davey Smith, T. R. Gaunt, P. C. Haycock, The MR-Base platformsupports systematic causal inferenceacrossthehuman phenome. eLife. 7 (2018), doi:10.7554/eLife.34408.
  • 15. ALSPAC, unrelatedindividuals, MR suggests height affects IQ and academic attainment.
  • 16. UK Biobank, unrelatedindividuals– MR suggests BMI/height affects education.
  • 17. Comparison of ROSLA and MR estimates of effect of educationon a range of phenotypes in the UK Biobank. MR in unrelatedindividuals suggests educationaffects height. N. M. Davies,M. Dickson,G. Davey Smith, F. Windmeijer,G. J. van den Berg, The effect of education on adultmortality,health, and income: triangulatingacrossgenetic and policy reforms (2018), doi:10.1101/250068.
  • 18. • Used samples of unrelated individuals • Controlled for standard covariates (age, sex, PCs) • Requires assumption that the height and BMI genetic variants are randomly distributed across the population • There are reasons to think this may not hold: • Fine scale population structure (Haworth et al 2019, Abdellaoui et al 2019) • Dynastic effects (Plomin and Bergeman 1991) • Assortative mating (Wright 1921) A. Abdellaoui,D.Hugh-Jones, L. Yengo, K. E. Kemper, M. G. Nivard,L. Veul, Y. Holtz, B. P. Zietsch,T. M. Frayling,N.R. Wray,J. Yang, K. J. H. Verweij, P. M. Visscher,Genetic correlates of social stratification in GreatBritain. Nature Human Behaviour (2019),doi:10.1038/s41562-019-0757-5. S. Haworth, R. Mitchell,L. Corbin,K. H. Wade, T. Dudding, A. Budu-Aggrey, D. Carslake,G.Hemani, L. Paternoster, G. D. Smith, N. Davies,D. J. Lawson, N. J. Timpson, Apparent latent structure within the UK Biobank samplehas implicationsfor epidemiological analysis. Nature Communications. 10 (2019), doi:10.1038/s41467-018-08219-1. R. Plomin,C. S. Bergeman, The nature of nurture: Genetic influenceon “environmental” measures.Behavioral and Brain Sciences. 14, 373–386 (1991). S. Wright, Systems of Mating. III.AssortativeMatingBased on Somatic Resemblance. Genetics. 6, 144–161 (1921). N. M. Davies,L. J. Howe, B. Brumpton, A. Havdahl,D. M. Evans, G. Davey Smith, Within family Mendelian randomization studies .Human Molecular Genetics. 28, R170–R179 (2019). L.-D. Hwang, N. M. Davies,N. M. Warrington,D. M. Evans,Integrating Family-Based and Mendelian Randomization Designs. Cold Spring Harb Perspect Med, a039503 (2020).
  • 19. 1) Fine scale population structure • Geographic or regionaldifferences in allelefrequency that relate to a trait of interest • For example: • People in Scotlanddrink more Irn Bru and haveadverse health outcomes. • Some genetic variantswill also have modestly different frequencies in Scotland • E.g. genetic variantsassociated with lactase persistence are more common in northern areas • This does not imply that Iru Bru causes adverse health outcomes G. Davey Smith, D. A. Lawlor,N. J. Timpson, J.Baban, M. Kiessling,I.N. M. Day, S. Ebrahim,Lactase persistence-related genetic variant:population substructureand health outcomes. Eur J Hum Genet. 17, 357–367 (2009).
  • 20. 2) Dynastic effects • Family structure: • dynastic effects that occur when the expression of parent’s genotype directly affects the offspring phenotype. • For example, if more educatedparents can afford tutoring for their children, leadingto better educational outcomesfor their offspring • Parents and offspring genotypes correlate 50% • Results in biased estimatesof the effect of exposure in the offspring
  • 21. 3) Assortative mating • Assortative mating - when individualsdo not choose their partners at random but select someone who is more similarto them on particularcharacteristicsthan would be expected by chance. • Assortment on education,BMI and height • Causes bias in MR estimates F. P. Hartwig, N. M. Davies,G. Davey Smith, Bias in Mendelian randomization dueto assortativemating. Genetic Epidemiology. 42, 608–620 (2018).
  • 22. Econometric methods • Consider the following model : 𝑥 𝑘,𝑖 = 𝛾0 + 𝛾1 𝑔 𝑘,𝑖 + 𝐶 𝑘,𝑖 + 𝑓𝑘 + 𝑣 𝑘,𝑖 𝑦 𝑘,𝑖 = 𝛽0 + 𝛽1 𝑥 𝑘,𝑖 + 𝐶 𝑘,𝑖 + 𝑓𝑘 + 𝑢 𝑘,𝑖 Where: 𝑦 𝑘,𝑖 and 𝑥 𝑘,𝑖 are the outcome and exposure for individual 𝑖from family 𝑘. 𝑔 𝑘,𝑖 is a set of genetic variantsthat are associated with the exposure. 𝐶 𝑘,𝑖 is a confounder of the associationof the exposure and the outcome. 𝑓𝑘 is a family level confounder. 𝑢 𝑘,𝑖 and 𝑣 𝑘,𝑖 are random error terms. 𝛽1 is the effect of the exposure on the outcome which we wish to estimate. This means that Mendelianrandomizationusing data from unrelatedindividualswould produce a biased estimate of 𝛽1 due to the correlationbetween 𝑔 𝑘,𝑖,𝑗 and 𝑓𝑘.
  • 23. Econometric methods • Difference-in-differencemethod with sibling data. • For any pair of siblings within family 𝑘, indicated 𝑘, 1 and 𝑘, 2, the genotypic difference at genetic variant 𝑗 is: 𝛿 𝑘,𝑗 = 𝑔 𝑘,1,𝑗 − 𝑔 𝑘,2,𝑗 The associationbetween the genotypic differences and phenotypicdifferences in the exposure, 𝑥, and outcome 𝑦, for SNP 𝑗 can be estimated via: 𝑥 𝑘,1 − 𝑥 𝑘,2 2 = 𝛾𝑗 𝛿 𝑘,𝑗 2 + 𝑢 𝑘,𝑗 𝑦 𝑘,1 − 𝑦 𝑘,2 2 = Γ𝑗 𝛿 𝑘,𝑗 2 + 𝑣 𝑘,𝑗 The estimated associations, 𝛾𝑗 and Γ𝑗, can be used with any summary level Mendelian randomization estimator. The within transformation – useful for large sample sizes.
  • 24. Econometric methods • Family fixed effect with sibling data. • Alternatively,we can estimate the associationsusing familyfixed effects indicatedby 𝑓𝑘 for each family: 𝑥 𝑘,𝑖 = 𝛾0 + 𝛾1,𝑗 𝑔 𝑘,𝑖,𝑗 + 𝑓𝑘 + 𝑢 𝑘,𝑖,𝑗 𝑦 𝑘,𝑖 = 𝛽0 + Γ1 𝑔 𝑘,𝑖,𝑗 + 𝑓𝑘 + 𝑣 𝑘,𝑖,𝑗 This estimatoraccountsfor any differences between families, which includes any effect of assortative mating or dynastic effects common to all siblings. The estimated associations, 𝛾𝑗 and Γ𝑗, can be used with any summary level Mendelian randomization estimator.
  • 25. Econometric methods • Adjusting for parentalgenotype with mother-father-offspringtrios data. • The estimatesof the SNP-exposure and SNP-outcome associationsfor each child can be adjustedfor their mother’s and father’s genotypes, indicatedby 𝑔𝑖𝑚,𝑗 and 𝑔𝑖𝑓,𝑗 respectively: 𝑥𝑖 = 𝛾0 + 𝛾1,𝑗 𝑔𝑖,𝑗 + 𝛾2,𝑗 𝑔𝑖𝑚,𝑗 + 𝛾3,𝑗 𝑔𝑖𝑓,𝑗 + 𝑢𝑖,𝑗 𝑦𝑖 = 𝛽0 + Γ1 𝑔𝑖,𝑗 + Γ2 𝑔𝑖𝑚,𝑗 + Γ3 𝑔𝑖𝑓,𝑗 + 𝑣𝑖,𝑗 These associationscan be used to estimate the effect of the exposure on the outcome using summary dataMendelianrandomizationmethods.
  • 26. Methods • Simulations • SNP-exposure r2 = 0.05 • Sample size = 10,000 • 90 independentSNPs • Simulationinvolvesan influence of parentalexposure influencingchild’s confounder.
  • 27. Results • Simulations • Bias occurs if there are dynastic effects. I.e. if the parentsaffect the offspring outcomes. • However, estimatesfrom within-family designs are less substantiallyless powerful. • The simulationsshow how family structure can be exploitedto control for the bias either using samples of siblings or mother-father-offspring trios.
  • 28. Empirical study • Hypotheses • What is the effect of BMI on 1. Diabetes 2. High blood pressure 3. Educational attainment • What is the effect height on 4. Educational attainment
  • 29. Data• HUNT • HUNT > ~125,000 unique individuals(H1-3)> ~71,800 genotyped (H2-3) > ~24,000 unrelated (2nd degree) Europeans. • Genotyping - HumanCoreExome12 v1.0, HumanCoreExome12 v1.1 and UM HUNT Biobankv1.0 (n=516,608). • Imputation– merged reference panel constructed from the HaplotypeReference Consortium (HRC) panel (release version 1.1) and a local reference panel • Empiricalstudy (HUNT+UKB) • HUNT2 > 65,237 participated> 56,374 genotyped > 53,288 complete data > 19,492 unrelated| 28,823 siblings> 13,103 families • UKBB > 503,317 participated> 370,180 met inclusion criteria > 33,642 siblings Exposuresand outcomes • Height, BMI > Education • BMI > Diabetes, Blood pressure Replication:23andMe 222,368 siblings
  • 30. BMI and height GWAS Clumped using r2<0.01, LD=10,000kb, to select: • 79 SNPs associated with BMI • 385 SNPs associated with height
  • 31. BMI > Diabetes BMI > High blood pressure Results HUNT and UK Biobank
  • 32. Results HUNT and UK Biobank Height > Education BMI > Education
  • 33. BMI > Diabetes BMI > High blood pressure Results 23andMe replication (n=222,368)
  • 34. Results 23andMe replication (n=222,368) Height > Education BMI > Education
  • 35. Summary • Meta-analysisof HUNT, UKB and 23andMe • A 1kg/m2 increase in BMI causes: • 0.82 (95%CI: 0.55 to 1.06) additional cases of diabetes per 100 • 1.25 (95%CI: 0.90 to 1.59) additional cases of high blood pressure per 100 • 0.00 (95%CI: -0.018 to 0.018) additional years of education (i.e. <6.6 days) • 10cm increase in height causes • 0.00 (95%CI: -0.015 to 0.015) additional years of education (i.e. <5.5 days) • Very well powered estimates. • Confirm established adverse effectsof higher BMI on health outcomes. • There is very unlikely to be meaningful causal effect of BMI or height on educational attainment.
  • 36. Next steps: MR within families consortium • a. Within siblings GWAS • Runningwithin sib and within families (trio)analysis to investigate the difference in genetic associations in unrelated individuals and related individuals across a range of traits and studies. • b. Assortative mating over time and across countries • Estimate assortativematingacross time and in different countries.Will require data on spouses and phenotype data. • c. Non-inherited variants GWAS • Estimatingdynasticand parent oforigin effects usingtrios or duos.This approach would allowus to investigate the intergenerationaltransmission ofa range of traits. • d. Assortative mating and obesity • There’s been several interestingpapers thathavesuggested that the change in obesity,particularlythe increase in the variance of BMI, could be explained byassortativemating.There havebeen some studies into this,but relativelyfewusingmolecular genetic data.The studies involvedcould provide newevidence about this hypothesis.
  • 37. Next steps: MR within families consortium • Included studies: • Finnish Twin Cohort • Chinese NationalTwin Registry • Swedish Twin Registry • Texas Twin Project • QIMR • Murcia Twin Registry • NTR • Australian MammographicDensityTwins and Sisters Study • Italian Twin Registry • Minnesota Center for Twin and Family Research • Osaka UniversityTwin Registry • LongitudinalStudyofAging Danish Twins • GenerationScotland • UK Biobank • TwinsUK • HUNT • Framingham Heart Study • ALSPAC • The HealthyTwin Study (Korea) • TEDS • QNTS • Exeter Family Studyof ChildhoodHealth (EFSOCH) • Mid-Atlantictwin reg • MoBa • Born in Bradford (duos) • Long Life Family Study • Inclusion criteria – relateds (duos,trios,siblings).
  • 38. Within-families consortium • Collaborative consortium effort for projects using family data. • Includes family studies and large population biobanks (e.g. UK Biobank has ~20K sibling pairs). • Main project: Sibling GWAS of 30+ complex traits. • Fit conventional and within-family models for comparison.
  • 39. Sibling GWAS • To date summary data on ~137,000 siblings, expect to reach 180,000+. • High coverage of phenotypes although sample sizes vary. Study Max number of siblings UK Biobank 40,210 HUNT 38,549 Generation Scotland 19,914 Netherlands Twin Registry 4,708 FinnTwin 8,810 TEDS 4,224 China Kadoorie Biobank 13,856 Aging Danish Twins 1,172 Viking 930 Orcades 837 TwinsUK 2,806 Australian Mammographic Study 1,811 Total 137,827
  • 40. Genetic association estimates decrease Phenotype Number of SNPs Shrinkage estimate in comparison of conventional and within-familymodels (95% C.I.) Height 385 9.0% (6.7%, 11.2%) Educational attainment 53 38.7% (23.1%, 54.3%) Ever smoking 92 17.5% (5.3%, 29.7%)
  • 41. Evidence of heterogeneity across studies Study N GWS shrinkage estimate (95% C.I.) UK Biobank 40,068 13.1% (9.4%, 16.2%) HUNT 37,689 0.8% (-3.3%, 4.9%) Generation Scotland 19,904 12.4% (7.5%, 17.4%) Meta-analysis 121,719 9.0% (6.7, 11.2%) e.g. Height variants
  • 42. Educational attainment more consistent Study N GWS shrinkage estimate (95% C.I.) UK Biobank 39,531 48.1% (29.5%, 66.6%) HUNT 32,120 29.2% (-0.2%, 58.6%) Generation Scotland 19,589 56.2% (21.1%, 91.3%) Meta-analysis 104,316 38.7% (23.1%, 54.3%)
  • 43. MR for Health Economics • No time, but may be of interest to health economists…
  • 44. Conclusions • Familialeffects can bias SNP-phenotype associations • These effects can bias genetic approachessuch as Mendelian randomization. • We demonstratedhow family structure can be used to control for these effects either using samples of siblingsor mother- father-offspring trios. • However, estimatesfrom within-familyMendelian randomization areless precise than estimates using unrelated individuals. • In samples from HUNT, UK Biobankstudies and 23andMe, we found that the effects of height and BMI on educational attainmentalmost entirely attenuated afterallowingfor a family fixed effects, whereas the effects of BMI on the risk of diabetesand high bloodpressure were similar when allowing for family effects. MR Davey Smith et al. 2003
  • 45. Conclusions • While allowing for family fixed effects or using difference-in-difference estimatorswill account for dynastic effects or assortative mating, these methods will not address bias due to violationsof the second Mendelianrandomizationassumption. • Use these estimatorswith the summary data methods (MR-Egger, weighted median and mode). • Any one study is likely to be underpowered to use both within family methods and pleiotropy robust methods. • Therefore, a consortium of family based studies was required, this gives sufficient power to use both within family and pleiotropyrobust methods. • Currently running sibling GWAS in just under 200,000 siblings…. watch this space! • https://www.biorxiv.org/content/10.1101/602516v1
  • 46. Acknowledgements – co-authors Bristol/MRC IEU • Laurence Howe • George DaveySmith • Gib Hemani • Tim Morris • Amanda Hughes • EleanorSanderson • Sean Harrison • Yoonsu Cho • Laura Howe University of Queensland • David Evans University of Pelotas • Fernando Hartwig 23andMe Research Team • Karl Heilbron • AdamAuton NTNU • Ben Brumpton • GunnhildÅberge Vie • Johan Håkon Bjørngaard • Bjørn Olav Åsvold • Cristen Willer • Kristian Hveem NIPH • Alexandra Havdahl Vrije Universiteit Amsterdam • Dorret I Boomsma • Michel G Nivard Oxford University • FrankWindmeijer The University of Melbourne • John Hopper • Shuai Li Virginia Commonwealth University • Michael Neale Karolinska Institutet • Nancy L Pedersen University of California Riverside • Chandra A Reynolds University of Texas at Austin • Elliot M Tucker-Drob • AndrewGrotzinger University of Virginia • Wei-Min Chen University of Helsinki • Jaakko Kaprio
  • 47. Acknowledgements – funding The Medical Research Council (MRC) and the UniversityofBristol support the MRC Integrative EpidemiologyUnit [MC_UU_12013/1, MC_UU_12013/9, MC_UU_00011/1]. NMD is supported byan Economics and Social Research Council (ESRC) Future Research Leaders grant [ES/N000757/1] and a Norwegian Research Council Grant number 295989. JHB was funded bythe Norwegian Research Council with grant number 295989. DME is funded by a National Health and Medical Research Council Senior Research Fellowship (1137714). EMTD was supported byNIH grants R01AG054628 and R01HD083613, and by the Jacobs Foundation.LDH is supported by a Career Development Award from the UK Medical Research Council (MR/M020894/1). This work is part of a project entitled ‘social and economicconsequences of health:causal inference methods and longitudinal,intergenerationaldata’,which is part of theHealth Foundation’s Social and EconomicValue of Health Research Programme (Award 807293). The Health Foundationis an independent charitycommitted to bringingabout better health and healthcare for people in the UK. GAV is supported bya Norwegian Research Council grant code 250335. CAR receives support from the NationalInstitutes ofHealth (NIH) includingR01AG060470, R01AG059329, R01AG058068, R01AG018386, and R01AG046938. NLP receives fundingfrom the National Institutes ofHealth Grants No. R01AG060470, R01AG059329. The Nord-TrøndelagHealth Study(The HUNT Study) is a collaborationbetween HUNT Research Center (Faculty of Medicine and Health Sciences, NTNU,Norwegian UniversityofScience and Technology),Nord-TrøndelagCountyCouncil, Central NorwayRegional Health Authority,and the Norwegian Institute ofPublic Health.The K.G. Jebsen Center for Genetic Epidemiologyis funded byStiftelsen Kristian Gerhard Jebsen;Facultyof Medicine and Health Sciences, NTNU; The Liaison Committee for education,research and innovation in CentralNorway;and the Joint Research Committee between St. Olavs Hospital and the Faculty of Medicine and Health Sciences, NTNU.The genotypingin HUNT was financed by the National Institute ofHealth (NIH); UniversityofMichigan; The Research Council of Norway;The Liaison Committee for education,research and innovation in Central Norway; and the Joint Research Committee between St. Olavs Hospital and the Faculty of Medicine and Health Sciences, NTNU. JK has been supported bythe Academyof Finland (grants 308248, 312073). RMF and RNB are supported bySir Henry Dale Fellowship (Wellcome Trust and Royal Societygrant:WT104150). GH is supported bytheWellcome Trust and Royal Society[208806/Z/17/Z]. AH was funded by the South-EasternNorwayRegional Health Authority,grants 2018059 and 2020022.