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MICROSCOPY
A Brief Overview

        Dr Saleh M.Y.


Practical Lab Experiment -1-
      MBBS-Phase II
        19/10/2010
                               1
- Introduction
- Definition
- Historical Background
- Varibles Used In Microscopy
- Compound Microscope - Structure And Function
- Use Of Microscope
- Various Types Of Microscopes
- Care Of Microscope



                                                 2
INTRODUCTION TO
  MICROSCOPY

          - Understanding the
            optical principles and
            construction of
            microscopes
          - Role of microscopy
          - Microscopic
            techniques and
            application          3
DEFINITION

- A microscope (Greek: micron = small and scopos =
   to look)
- MICROSCOPE: Is an instrument for viewing
   objects that are too small to be seen by the naked
   or unaided eye
- MICROSCOPY: The science of investigating
   small objects using such an instrument is called
   microscopy
                                                        4
HISTORICAL BACKGROUND

   1590 - Hans Janssen and his son Zacharias Janssen,
    developed first microscope.

   1609 - Galileo Galilei - occhiolino or compound
    microscope.

   1620 - Christian Huygens, another Dutchman,
    developed a simple 2-lens ocular system that was
    chromatically corrected.
                                                       5
Antony van Leeuwenhoek
      (1632-1723)
              - Anton van Leeuwenhoek is
                 generally credited with bringing
                 the microscope to the attention of
                 biologists.
              - A tradesman of Delft, Holland.



 1661 - He discovered bacteria, free-living and
parasitic microscopic protists, sperm cells, blood
cells, microscopic nematodes etc.
                                                 6
Microscope used by
Anton von Leeuwenhoek



   An old pocket Microscope




                              7
VARIABLES
  USED IN
MICROSCOPY




             8
MAGNIFICATION

Degree of enlargement
No of times the length, breadth or diameter,
 of an object is multiplied.

    MAGNIFICATION VS SHARPNESS

USEFUL MAGNIFICATION AND EMPTY
 MAGNIFICATION
                                               9
RESOLUTION: Ability to reveal closely
 adjacent structural details as separate and
 distinct

LIMIT OF RESOLUTION (LR): The min
  distance between two visible bodies at
  which they can be seen as separate and
  not in contact with each other


                                           10
LR = 0.61 x W                      W = Wavelength
        NA                         NA = Num aperture


Types of microscope                  Resolving power
Compound Microscope                  200 nanometers


Scanning Electron Microscope         10 nanometers



Transmission Electron Microscope     0.2 nanometers




                                                       11
NUMERICAL APERTURE(NA)
- Ratio of diameter of lens to its focal length
- NA = n Sin θ/2
   n = refractive index,
   θ = angle of aperture (CAD) B
                          C                  D

                                     θ/2
n of air = 1
n of oil = 1.5
                                                  12
                                    A
DEFINITION

- Capacity of an objective to render outline
  of the image of an object clear and distinct



- Depends of elimination of Spherical and
  Chromatic aberration


                                             13
ABERRATION
 - Chromatic aberration
 - Correction of aberration – Achromatic
   objective and Apochromatic objectives.



Incident
   light

               Blue focus
                            Red focus       14
Spherical aberration




                        Focus of axial rays


       Focus of marginal rays            15
TYPES OF MICROSCOPE
- Simple microscope
- Compound microscope
- Phase Contrast
  Microscope
- Dark Ground Microscope
- Fluorescent Microscope
- Electron Microscope
- Others
                           16
COMPOUND
MICROSCOPE




Compound microscope made
  by John Cuff 1750
                           17
PARTS OF COMPOUND MICROSCOPE

- Ocular (Eye piece)
- Body or Tube
- Coarse focusing knob
- Fine focusing knob
- Objective Lens
- Movable stage
- Condenser Lenses
- Field (Iris) Diaphragm
- Mirror and light source

                                  18
OBJECTIVE LENS
• Mounted on Nose piece
 It forms magnified real image.
• Magnification of objective
= Optical Tube length
      Focal Length


         • Scan - 4X
         • Low Power - 10X
TYPES
         • High Power - 40X
         • Oil immersion - 100X    19
OIL IMMERSION OBJECTIVE
- Highest magnification
- Oil prevents refraction of light outwards and
  allows it to pass straight in to objective

                  G
 FBEG - OIL                            D
                                           ABCD - AIR


                       E
        OIL
                            C GLASS
                           B                        20
                   A
EYE PIECE

- Forms magnified virtual & erect
    image
- TYPES
    (a)   Monocular
    (b)   Binocular
    (c)   Trinocular
          or
    (a)   Huygenian
    (b)   Ramsden
    (c)   Compensating
                                    21
What’s the power of this lens?
To calculate the power of magnification, multiply the power of the
ocular lens by the power of the objective, e..g.: 10x40=400 times



                                               What are the powers of
                                               magnification for each
                                                          of
                                               the objectives we have
                                                on our microscopes?
                                                 Fill in the table on
                                                  your worksheet.
23
Comparing Powers of Magnification


   We can see better details with higher the powers of
   magnification, but we cannot see as much of the image.


                            10x               40x



  Which of these images
  would be viewed at a
    higher power of
    magnification?
Let’s give it a try ...
1 – Turn on the microscope and then rotate the nosepiece to click the
red-banded objective into place.
2 – Place a slide on the stage and secure it using the stage clips. Use
the coarse adjustment knob (large knob) to get it the image into view
and then use the fine adjustment knob (small knob) to make it
clearer.
3 – Once you have the image in view, rotate the nosepiece to view it
under different powers. Draw what you see on your worksheet!
      Be careful with the largest objective! Sometimes there is
      not enough room and you will not be able to use it!
4 – When you are done, turn off the microscope and put up the
slides you used.
How to make a wet-mount slide …
1 – Get a clean slide and coverslip from your teacher.
2 – Place ONE drop of water in the middle of the slide. Don’t use
too much or the water will run off the edge and make a mess!
3 – Place the edge of the cover slip on one side of the water drop.
4 - Slowly lower the cover slip on top of the drop.
                        Cover          Lower slowly
                         Slip



5 – Place the slide on the stage and view it first with the red-banded
objective. Once you see the image, you can rotate the nosepiece to
view the slide with the different objectives.
                 You do not need to use the stage clips
                    when viewing wet-mount slides!
ILLUMINATION - Lamp,
sunlight, battery operated
lamp, 60 W bulb, Quartz
halogen light.


FILTERS - Blue, Green,
Heat absorbing filters,
Barrier filters.

                             27
KOHLER’S ILLUMINATION
Multiple step operation employed to attain
     optimal illumination:

    1.    Remove any diffusing filter.
    2.    Put a slide on the stage and focus.
    3.    Completely close the field diaphragm.
    4.    Move the condenser until the border
          or the iris hexagon is neat and clear.
    5.    Center if necessary.
    6.    Open the field diaphragm until the tip
          of the hexagon touches the field limit
                                              28
The Parts of a Microscope
The Parts of a Microscope
                    Ocular Lens

   Body Tube


   Nose Piece
                      Arm
   Objective

    Lenses
                      Stage
    Stage

    Clips            Coarse Adj

   Diaphragm       Fine Adjustment
   Light Source
                      Base
Body Tube
The body tube holds the objective lenses
 and the ocular lens at the proper distance




Diagram
Nose Piece
The Nose Piece holds the objective lenses
 and can be turned to increase the
 magnification




Diagram
Objective Lenses
The Objective Lenses increase
 magnification (usually from 10x to 40x)




Diagram
Stage Clips
These 2 clips hold the slide/specimen in
 place on the stage.




Diagram
Diaphragm
The Diaphragm controls the amount of light
 on the slide/specimen




                           Turn to let more light in or to
                           make dimmer.


Diagram
Light Source
Projects light upwards through the
diaphragm, the specimen and the lenses

Some have lights, others have mirrors
where you must move the mirror to reflect
light



Diagram
Ocular Lens/Eyepiece
Magnifies the specimen image




Diagram
Arm
Used to support the microscope when
 carried. Holds the body tube, nose piece
 and objective lenses




Diagram
Stage
Supports the slide/specimen




Diagram
Coarse Adjustment Knob
Moves the stage up and down (quickly) for
 focusing your image




Diagram
Fine Adjustment Knob
This knob moves the stage SLIGHTLY to
 sharpen the image




Diagram
Base
Supports the microscope




Diagram
Magnification
To determine your magnification…you
 just multiply the ocular lens by the
 objective lens
Ocular 10x Objective 40x:10 x 40 = 400
                 So the object is 400 times “larger”

                          Objective Lens have
                          their magnification
                          written on them.

                Ocular lenses usually magnifies by 10x
HOW A MICROSCOPE WORKS ?




                       45
OPTICAL PATH IN COMPOUND
      MICROSCOPE




                           46
Method of using Compound
       Microscope




                           47
1. Grasp the microscopes arm with
         one hand and place your other
         hand under the base.
      2. Place the microscope on a bench.
arm
arm      Adjust seat

      3. Clean Lenses.
      4. Turn the coarse adjustment knob
         to raise the body tube
                                      48
5. Revolve the nose piece to set low-
  power objective lens.

6. Adjust the Condenser lenses and
  diaphragm .


7. Place a slide on the stage and secure
  with stage clips.

8. Switch on the light at low intensity and
  then increase intensity.
                                        49
9. Turn the coarse
adjustment knob to lower
the body tube until the low
power objective reaches
its lowest point.


10. Looking through the eyepiece, very slowly move
the coarse adjustment knob until the specimen
comes into focus.


11. Adjust distance between eye piece.
                                                     50
12. Switch to the high power objective lens only
   after adjusting condenser and iris diaphragm.

13. Place a drop of oil over specimen before using
   oil immersion objective.

14. Lower the objective until oil makes contact with
   objective.
15. Looking through the eyepiece, very slowly
   focus the objective away from the slide i.e by
   raising the objective lens.
                                                    51
How to observe a slide ?




                           52
Causes of Error in Focusing

- Revolving Nose Piece is off centre
- Preparation is upside down
- Thick cover slip
- Dirt or Dried oil over Lens
- Air bubble in immersion oil
- Poor illumination – Condenser not fully
  racked up
                                            53
PHASE CONTRAST MICROSCOPE




                            54
Phase Contrast Microscope
- First described in 1934 by Dutch physicist
  Frits Zernike

- Produces high-contrast images of
  transparent specimens

- Advantage - Living cells can be examined
  in their natural state
                                               55
Principle Of Phase Contrast
             Microscopy

- Unstained bacteria have constituents of
  different refractive index .
- Diffraction of light
- Phase contrast microscope employs an
  optical mechanism to translate minute
  variations in phase into corresponding
  changes in intensity of image.

                                            56
57
Requisite For Phase Contrast
           Microscopy

- Annular Diaphragm
- Phase Plate




                                 58
Condenser Annulus
- The condenser annulus or annular
  diaphragm is opaque flat-black (light
  absorbing) plate with a transparent
  annular ring.
- Produces hollow cone of light.




                                          59
Condenser
  annulus




            60
Phase Plate
- Placed in back focal plane of objective.
- Function:
  1. Enhances phase difference by retarding
     diffracted wave front by one quarter of
     wavelength .
  2. Reduces intensity of direct rays and
     equalizes it with diffracted rays
     intensity.

                                           61
Phase plate




              62
Images of Phase Contrast
            Microscpy




Spirilium volutans   Clostridium botulinum
                                         63
Comparision of Images of Bright Field
  and Phase Contrast Microscopy




                                        64
Uses of Phase Contrast Microscopy

- Phase contrast enables visualization of
  internal cellular components.
- Diagnosis of tumor cells .
- Examination of growth, dynamics, and
  behavior of a wide variety of living cells in
  cell culture


                                                  65
Dark Ground Microscope
- Optical system to enhance the contrast of
  unstained bodies .

- Specimen appears gleaming bright against
  dark background



PRINCIPLE OF DGI
                                              66
Optical path in Dark Ground
        Microscopy




                              67
Requisites for Dark Ground
            Microscopy
- Dark ground
  condenser
- High intensity
  lamp
- Funnel stop



                                  68
Uses of Dark Ground Microscopy

                 Useful in demonstrating
                     -Treponema pallidum
                     - Leptospira
                     - Campylobacter jejuni
                     - Endospore
Treponema pallidum
                                              69
Fluorescence Microscopy
PRINCIPLE
                               Visible
 UV light
                               radiation


              Fluorochrome

  FITC        EX - 495 nm   EM - 520nm

  TRITC       EX – 540 nm   EM – 590 nm

  Texas Red   Ex – 600 nm   EM – 615 nm
                                           70
- UV rays passes through exciter filter
- Dark ground condenser
- Micro organisms stained with fluorescent
  dye, when examined under microscope
  with ultraviolet light are seen as bright
  object against dark background




                                              71
Use of Fluorescence Microscopy

- Auramine Rhodamine – Yellow
   Fl - Tubercle bacilli
- Acridine Orange R - gives
   orange red Fl with RNA and
   yellow green Fl with DNA
- QBC
- IMMUNOFLUORESCENCE

                                72
Electron
Microscope


             73
ELECTRON MICROSCOPE

-Electron Microscopes uses a beam of highly
 energetic electrons to examine objects on a
 very fine scale. This examination can yield the
 info about
     - Topography
     - Morphology
     - Composition
     - Crystallographic structure


                                                   74
TYPES OF EM

- Transmission Electron Microscope (TEM)

- Scanning Electron Microscope (SEM)




                                           75
Transmission Electron
           Microscope (TEM)
- Stream of electrons is formed

- Accelerated using a positive electrical
  potential

- Focused by metallic aperture and Electro
   magnets

-Interactions occur inside the irradiated sample
   which are detected and transformed into an
   image .                                       76
TEM (Cont)
-Projector Lens forms
  image on Fluorescent
  viewing screen

- 2D Image

- Magnification
  10,000 X to 100,000 X

                              77
Scanning Electron Microscope

- Scan a gold-plated specimen to give a 3-D
   view of the surface of an object which is
   black and white.
- Used to study surface features of cells and
  viruses.
- Scanning Electron microscope has resolution
   1000 times better than Light microscope .


                                                78
Working of SEM




                 79
SEM IMAGES




                     Vibrio cholerae with
Treponema pallidum     polar flagella   80
OTHER MICROSCOPES
INVERTED MICROSCOPE

- Used in metallurgy
- Examination of cultures in flat bottom
  dishes
- Micro dissection
- Examination of parasites
- Observation of agglutination in serology
                                             81
STEREO MICROSCOPE
  - Double Microscope
  - Produces 3D images
POLARIZING MICROSCOPE
  - Uses two Polariser
  - Gives info about Birefringence of a body
  - Used in Crystallography, Urine
    examination
  - Apple Green Birefringerence in
                                           82
    AMYLODOSIS
CONFOCAL SCANNING
        LASER MICROSCOPE

- Uses a laser beam to illuminate
  a specimen whose image is
  then digitally enhanced for
  viewing on a computer monitor.

- Laser beam scans single plane
  of 1µm thickness.
                                    83
Comparison of Depth of Light
 Collection and Image clarity
Light Microscope   Confocal Scanning
                    Laser Microscope




                                       84
PRINCIPLE OF CONFOCAL MICROSCOPY




                                   85
USES OF CONFOCAL
           MICROSCOPE


- Observing cellular morphology in
  multilayered specimen
- Eg. used in diagnosing Ca cervix
- Evaluation and diagnosis of basal cell
  carcinoma of skin


                                           86
What is the advantage of using a
    confocal microscope?

- By having a confocal pinhole, the
  microscope is really efficient at rejecting
  out of focus fluorescent light so that very
  thin section of a sample can be analyzed.
- By scanning many thin sections through a
  sample, one can build up a very clean
  three-dimensional image .

                                                87
NEWER MICROSCOPE
-   SCANNING PROBE MICROSCOPE -
    Class of Microscope that measures surface
    features by moving a sharp probe over
    object surface. Used to visualize atoms and
    molecules
-   Scanning Tunneling Microscope
    (STM)
-   Atomic Force Microscope (AFM)
                                                  88
CARE OF THE MICROSCOPE

- Handling
- Proper storage
- Care of Lenses
- Care of oil emersion objective
- Care of lamp


                                   89
90

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Microbiology lab 2

  • 1. MICROSCOPY A Brief Overview Dr Saleh M.Y. Practical Lab Experiment -1- MBBS-Phase II 19/10/2010 1
  • 2. - Introduction - Definition - Historical Background - Varibles Used In Microscopy - Compound Microscope - Structure And Function - Use Of Microscope - Various Types Of Microscopes - Care Of Microscope 2
  • 3. INTRODUCTION TO MICROSCOPY - Understanding the optical principles and construction of microscopes - Role of microscopy - Microscopic techniques and application 3
  • 4. DEFINITION - A microscope (Greek: micron = small and scopos = to look) - MICROSCOPE: Is an instrument for viewing objects that are too small to be seen by the naked or unaided eye - MICROSCOPY: The science of investigating small objects using such an instrument is called microscopy 4
  • 5. HISTORICAL BACKGROUND  1590 - Hans Janssen and his son Zacharias Janssen, developed first microscope.  1609 - Galileo Galilei - occhiolino or compound microscope.  1620 - Christian Huygens, another Dutchman, developed a simple 2-lens ocular system that was chromatically corrected. 5
  • 6. Antony van Leeuwenhoek (1632-1723) - Anton van Leeuwenhoek is generally credited with bringing the microscope to the attention of biologists. - A tradesman of Delft, Holland.  1661 - He discovered bacteria, free-living and parasitic microscopic protists, sperm cells, blood cells, microscopic nematodes etc. 6
  • 7. Microscope used by Anton von Leeuwenhoek An old pocket Microscope 7
  • 8. VARIABLES USED IN MICROSCOPY 8
  • 9. MAGNIFICATION Degree of enlargement No of times the length, breadth or diameter, of an object is multiplied. MAGNIFICATION VS SHARPNESS USEFUL MAGNIFICATION AND EMPTY MAGNIFICATION 9
  • 10. RESOLUTION: Ability to reveal closely adjacent structural details as separate and distinct LIMIT OF RESOLUTION (LR): The min distance between two visible bodies at which they can be seen as separate and not in contact with each other 10
  • 11. LR = 0.61 x W W = Wavelength NA NA = Num aperture Types of microscope Resolving power Compound Microscope 200 nanometers Scanning Electron Microscope 10 nanometers Transmission Electron Microscope 0.2 nanometers 11
  • 12. NUMERICAL APERTURE(NA) - Ratio of diameter of lens to its focal length - NA = n Sin θ/2 n = refractive index, θ = angle of aperture (CAD) B C D θ/2 n of air = 1 n of oil = 1.5 12 A
  • 13. DEFINITION - Capacity of an objective to render outline of the image of an object clear and distinct - Depends of elimination of Spherical and Chromatic aberration 13
  • 14. ABERRATION - Chromatic aberration - Correction of aberration – Achromatic objective and Apochromatic objectives. Incident light Blue focus Red focus 14
  • 15. Spherical aberration Focus of axial rays Focus of marginal rays 15
  • 16. TYPES OF MICROSCOPE - Simple microscope - Compound microscope - Phase Contrast Microscope - Dark Ground Microscope - Fluorescent Microscope - Electron Microscope - Others 16
  • 18. PARTS OF COMPOUND MICROSCOPE - Ocular (Eye piece) - Body or Tube - Coarse focusing knob - Fine focusing knob - Objective Lens - Movable stage - Condenser Lenses - Field (Iris) Diaphragm - Mirror and light source 18
  • 19. OBJECTIVE LENS • Mounted on Nose piece  It forms magnified real image. • Magnification of objective = Optical Tube length Focal Length • Scan - 4X • Low Power - 10X TYPES • High Power - 40X • Oil immersion - 100X 19
  • 20. OIL IMMERSION OBJECTIVE - Highest magnification - Oil prevents refraction of light outwards and allows it to pass straight in to objective G FBEG - OIL D ABCD - AIR E OIL C GLASS B 20 A
  • 21. EYE PIECE - Forms magnified virtual & erect image - TYPES (a) Monocular (b) Binocular (c) Trinocular or (a) Huygenian (b) Ramsden (c) Compensating 21
  • 22. What’s the power of this lens? To calculate the power of magnification, multiply the power of the ocular lens by the power of the objective, e..g.: 10x40=400 times What are the powers of magnification for each of the objectives we have on our microscopes? Fill in the table on your worksheet.
  • 23. 23
  • 24. Comparing Powers of Magnification We can see better details with higher the powers of magnification, but we cannot see as much of the image. 10x 40x Which of these images would be viewed at a higher power of magnification?
  • 25. Let’s give it a try ... 1 – Turn on the microscope and then rotate the nosepiece to click the red-banded objective into place. 2 – Place a slide on the stage and secure it using the stage clips. Use the coarse adjustment knob (large knob) to get it the image into view and then use the fine adjustment knob (small knob) to make it clearer. 3 – Once you have the image in view, rotate the nosepiece to view it under different powers. Draw what you see on your worksheet! Be careful with the largest objective! Sometimes there is not enough room and you will not be able to use it! 4 – When you are done, turn off the microscope and put up the slides you used.
  • 26. How to make a wet-mount slide … 1 – Get a clean slide and coverslip from your teacher. 2 – Place ONE drop of water in the middle of the slide. Don’t use too much or the water will run off the edge and make a mess! 3 – Place the edge of the cover slip on one side of the water drop. 4 - Slowly lower the cover slip on top of the drop. Cover Lower slowly Slip 5 – Place the slide on the stage and view it first with the red-banded objective. Once you see the image, you can rotate the nosepiece to view the slide with the different objectives. You do not need to use the stage clips when viewing wet-mount slides!
  • 27. ILLUMINATION - Lamp, sunlight, battery operated lamp, 60 W bulb, Quartz halogen light. FILTERS - Blue, Green, Heat absorbing filters, Barrier filters. 27
  • 28. KOHLER’S ILLUMINATION Multiple step operation employed to attain optimal illumination: 1. Remove any diffusing filter. 2. Put a slide on the stage and focus. 3. Completely close the field diaphragm. 4. Move the condenser until the border or the iris hexagon is neat and clear. 5. Center if necessary. 6. Open the field diaphragm until the tip of the hexagon touches the field limit 28
  • 29. The Parts of a Microscope
  • 30. The Parts of a Microscope Ocular Lens Body Tube Nose Piece Arm Objective Lenses Stage Stage Clips Coarse Adj Diaphragm Fine Adjustment Light Source Base
  • 31. Body Tube The body tube holds the objective lenses and the ocular lens at the proper distance Diagram
  • 32. Nose Piece The Nose Piece holds the objective lenses and can be turned to increase the magnification Diagram
  • 33. Objective Lenses The Objective Lenses increase magnification (usually from 10x to 40x) Diagram
  • 34. Stage Clips These 2 clips hold the slide/specimen in place on the stage. Diagram
  • 35. Diaphragm The Diaphragm controls the amount of light on the slide/specimen Turn to let more light in or to make dimmer. Diagram
  • 36. Light Source Projects light upwards through the diaphragm, the specimen and the lenses Some have lights, others have mirrors where you must move the mirror to reflect light Diagram
  • 37. Ocular Lens/Eyepiece Magnifies the specimen image Diagram
  • 38. Arm Used to support the microscope when carried. Holds the body tube, nose piece and objective lenses Diagram
  • 40. Coarse Adjustment Knob Moves the stage up and down (quickly) for focusing your image Diagram
  • 41. Fine Adjustment Knob This knob moves the stage SLIGHTLY to sharpen the image Diagram
  • 43.
  • 44. Magnification To determine your magnification…you just multiply the ocular lens by the objective lens Ocular 10x Objective 40x:10 x 40 = 400 So the object is 400 times “larger” Objective Lens have their magnification written on them. Ocular lenses usually magnifies by 10x
  • 45. HOW A MICROSCOPE WORKS ? 45
  • 46. OPTICAL PATH IN COMPOUND MICROSCOPE 46
  • 47. Method of using Compound Microscope 47
  • 48. 1. Grasp the microscopes arm with one hand and place your other hand under the base. 2. Place the microscope on a bench. arm arm Adjust seat 3. Clean Lenses. 4. Turn the coarse adjustment knob to raise the body tube 48
  • 49. 5. Revolve the nose piece to set low- power objective lens. 6. Adjust the Condenser lenses and diaphragm . 7. Place a slide on the stage and secure with stage clips. 8. Switch on the light at low intensity and then increase intensity. 49
  • 50. 9. Turn the coarse adjustment knob to lower the body tube until the low power objective reaches its lowest point. 10. Looking through the eyepiece, very slowly move the coarse adjustment knob until the specimen comes into focus. 11. Adjust distance between eye piece. 50
  • 51. 12. Switch to the high power objective lens only after adjusting condenser and iris diaphragm. 13. Place a drop of oil over specimen before using oil immersion objective. 14. Lower the objective until oil makes contact with objective. 15. Looking through the eyepiece, very slowly focus the objective away from the slide i.e by raising the objective lens. 51
  • 52. How to observe a slide ? 52
  • 53. Causes of Error in Focusing - Revolving Nose Piece is off centre - Preparation is upside down - Thick cover slip - Dirt or Dried oil over Lens - Air bubble in immersion oil - Poor illumination – Condenser not fully racked up 53
  • 55. Phase Contrast Microscope - First described in 1934 by Dutch physicist Frits Zernike - Produces high-contrast images of transparent specimens - Advantage - Living cells can be examined in their natural state 55
  • 56. Principle Of Phase Contrast Microscopy - Unstained bacteria have constituents of different refractive index . - Diffraction of light - Phase contrast microscope employs an optical mechanism to translate minute variations in phase into corresponding changes in intensity of image. 56
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  • 58. Requisite For Phase Contrast Microscopy - Annular Diaphragm - Phase Plate 58
  • 59. Condenser Annulus - The condenser annulus or annular diaphragm is opaque flat-black (light absorbing) plate with a transparent annular ring. - Produces hollow cone of light. 59
  • 61. Phase Plate - Placed in back focal plane of objective. - Function: 1. Enhances phase difference by retarding diffracted wave front by one quarter of wavelength . 2. Reduces intensity of direct rays and equalizes it with diffracted rays intensity. 61
  • 63. Images of Phase Contrast Microscpy Spirilium volutans Clostridium botulinum 63
  • 64. Comparision of Images of Bright Field and Phase Contrast Microscopy 64
  • 65. Uses of Phase Contrast Microscopy - Phase contrast enables visualization of internal cellular components. - Diagnosis of tumor cells . - Examination of growth, dynamics, and behavior of a wide variety of living cells in cell culture 65
  • 66. Dark Ground Microscope - Optical system to enhance the contrast of unstained bodies . - Specimen appears gleaming bright against dark background PRINCIPLE OF DGI 66
  • 67. Optical path in Dark Ground Microscopy 67
  • 68. Requisites for Dark Ground Microscopy - Dark ground condenser - High intensity lamp - Funnel stop 68
  • 69. Uses of Dark Ground Microscopy Useful in demonstrating -Treponema pallidum - Leptospira - Campylobacter jejuni - Endospore Treponema pallidum 69
  • 70. Fluorescence Microscopy PRINCIPLE Visible UV light radiation Fluorochrome FITC EX - 495 nm EM - 520nm TRITC EX – 540 nm EM – 590 nm Texas Red Ex – 600 nm EM – 615 nm 70
  • 71. - UV rays passes through exciter filter - Dark ground condenser - Micro organisms stained with fluorescent dye, when examined under microscope with ultraviolet light are seen as bright object against dark background 71
  • 72. Use of Fluorescence Microscopy - Auramine Rhodamine – Yellow Fl - Tubercle bacilli - Acridine Orange R - gives orange red Fl with RNA and yellow green Fl with DNA - QBC - IMMUNOFLUORESCENCE 72
  • 74. ELECTRON MICROSCOPE -Electron Microscopes uses a beam of highly energetic electrons to examine objects on a very fine scale. This examination can yield the info about - Topography - Morphology - Composition - Crystallographic structure 74
  • 75. TYPES OF EM - Transmission Electron Microscope (TEM) - Scanning Electron Microscope (SEM) 75
  • 76. Transmission Electron Microscope (TEM) - Stream of electrons is formed - Accelerated using a positive electrical potential - Focused by metallic aperture and Electro magnets -Interactions occur inside the irradiated sample which are detected and transformed into an image . 76
  • 77. TEM (Cont) -Projector Lens forms image on Fluorescent viewing screen - 2D Image - Magnification 10,000 X to 100,000 X 77
  • 78. Scanning Electron Microscope - Scan a gold-plated specimen to give a 3-D view of the surface of an object which is black and white. - Used to study surface features of cells and viruses. - Scanning Electron microscope has resolution 1000 times better than Light microscope . 78
  • 80. SEM IMAGES Vibrio cholerae with Treponema pallidum polar flagella 80
  • 81. OTHER MICROSCOPES INVERTED MICROSCOPE - Used in metallurgy - Examination of cultures in flat bottom dishes - Micro dissection - Examination of parasites - Observation of agglutination in serology 81
  • 82. STEREO MICROSCOPE - Double Microscope - Produces 3D images POLARIZING MICROSCOPE - Uses two Polariser - Gives info about Birefringence of a body - Used in Crystallography, Urine examination - Apple Green Birefringerence in 82 AMYLODOSIS
  • 83. CONFOCAL SCANNING LASER MICROSCOPE - Uses a laser beam to illuminate a specimen whose image is then digitally enhanced for viewing on a computer monitor. - Laser beam scans single plane of 1µm thickness. 83
  • 84. Comparison of Depth of Light Collection and Image clarity Light Microscope Confocal Scanning Laser Microscope 84
  • 85. PRINCIPLE OF CONFOCAL MICROSCOPY 85
  • 86. USES OF CONFOCAL MICROSCOPE - Observing cellular morphology in multilayered specimen - Eg. used in diagnosing Ca cervix - Evaluation and diagnosis of basal cell carcinoma of skin 86
  • 87. What is the advantage of using a confocal microscope? - By having a confocal pinhole, the microscope is really efficient at rejecting out of focus fluorescent light so that very thin section of a sample can be analyzed. - By scanning many thin sections through a sample, one can build up a very clean three-dimensional image . 87
  • 88. NEWER MICROSCOPE - SCANNING PROBE MICROSCOPE - Class of Microscope that measures surface features by moving a sharp probe over object surface. Used to visualize atoms and molecules - Scanning Tunneling Microscope (STM) - Atomic Force Microscope (AFM) 88
  • 89. CARE OF THE MICROSCOPE - Handling - Proper storage - Care of Lenses - Care of oil emersion objective - Care of lamp 89
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