Improving links between Human Proteome Atlas (HPA) and EMBL-EBI resources

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Rafael C. Jimenez

11 February 2013

Data & Analytics

Rafael C. Jimenez
2013-02-11
Improving links between
Human Proteome Atlas (HPA)
and EMBL-EBI resources

Protein expression integration
13.12.182
Immunohistochemistry Mass spectrometry
Protein sequences

EBI search - S4
• Summaries from different sources
• Links to the original data
• “Just enough” just “in time”
13.12.183

Protein Annotation Ontology - Biosapiens
13.12.184
• Common control vocabulary
• Links to the original data
• Comparable annotations

DAS integration
13.12.185
Immunohistochemistry Mass spectrometry
Protein sequences
DAS
DAS
DAS
DAS/S4

Expression metadata integration
13.12.189
• Common fields
• Species
• Organism part
• Tissue
• Subcellular location
• Cell type
• Source type
• Abundance
• ...
• Format and distribution
• Federation with a common query interface
• DAS
• mzTab?
• RDF?
• ...

Improving links between Human Proteome Atlas (HPA) and EMBL-EBI resources

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