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Pathema: A Clade Specific Bioinformatics Resource Center

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Pathema
Pathema

Conference: Meeting at NIH, Sep. 22, 2008 Presenter: Lauren Brinkac

TechnologyEducationHealth & Medicine
1 of 82
PATHEMA: A CLADE SPECIFIC BIOINFORMATICS RESOURCE CENTER Lauren Brinkac The J. Craig Venter Institute
What is Pathema? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
What is Pathema? ,[object Object],[object Object],[object Object],[object Object]
All Bacillus (24) B. anthracis (17) B. cereus (3) B. thuringiensis (2) B. subtilis B. pumilus All Clostridium (25) C. perfringens (9) C. botulinum (9) C. difficile C. thermocellum C. acetobutylicum C. tetani C. butyricum C. novyi C. phytofermentans All Burkholderia (28) B. mallei (11) B. pseudomallei (10) B. thailandensis B. cenocepacia B. sp. B. phages (4) P. aeruginosa R. solanacearum All Entamoeba (3) E. histolytica E. dispar E. invadens
 
Pathema Header
Pathema Header A quick link to locus and annotation search is available at the top of all Pathema pages
Pathema Header An organism menu allows you to see all genomes available on Pathema
Pathema Header The Header Menu
Pathema Menus The Header Menu offers an efficient tool based way to navigate through Pathema
Pathema Menus Clicking on “Searches” takes you to a detailed list of the tools available
Gene Search: Annotation The information “i” gives you details about the tool Breadcrumbs to orient you
Gene Search: Annotation
Gene Search: Evidence
Gene Search
Gene Search: Evidence
Carts
Gene Cart
Carts
Genome Cart
Pathema Home Page
Community Registration ,[object Object],[object Object],[object Object],[object Object]
Available Pathema Genomes
 
 
 
Detailed Strain Information ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
 
 
 
 
 
 
 
 
All vs. Protein Alignment ,[object Object],[object Object],[object Object]
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Pathema Blast
Protein Motif Search
Pathogenicity
Therapeutics
MUMmer: Align Genomes
Genome Homology Graph
Genome Homology Graph
Protein Scatter Plot
Color by Identity
Change the Settings
GC Comparison Graph
Pseudo-2D Gel
Downloads
Batch Download
Batch Download
Downloads
Gene Attribute Download
Gene Attribute Download
What is the future of Pathema? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
JCVI’s Annotation Service ,[object Object],[object Object],[object Object],[object Object],[object Object]
Acknowledgements ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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