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LIQUID BIOPSY
Dr. Manan Shah
Dr. ML Harendra Kumar
CONTENTS
• Introduction
• Definition
• What comes under liquid biopsy
• Circulating tumor cells (CTCs)
• Circulating tumor DNAs (ctDNAs)
• A new addition in liquid biopsy
• Indications of liquid biopsy
• Comparisons of somatic mutation expression in
ctDNAs and primary tumour
• Tumour biopsy & liquid biopsy
• Summary
• References
Molecular diagnostic scheme representing
routine biological specimens and their
molecular alterations.
INTRODUCTION
• The diagnosis of cancer has undergone a
paradigm shift.
• No longer is cancer diagnosed only based
on morphological parameters.
• More and more the diagnostic algorithm is
supported by immunohistochemical and
molecular alterations at the DNA, mRNAs,
miRNAs and proteomic level.
INTRODUCTION
• Multiple platforms and technological
advances enable faster and cheaper analysis
of all these as well as the whole genome.
• Recent scientific advances in understanding
circulating tumor cells, cell-free DNA/RNA,
and exosomes in blood have laid a solid
foundation for the development of routine
molecular ‘liquid biopsies’.
INTRODUCTION
• This approach provides non-invasive access
to genetic information – somatic mutations,
epigenetic changes, and differential
expression – about the physiological
conditions of body and diseases.
• Liquid biopsy has the potential to provide
information about cancers without invasive
biopsy, using circulating biomarkers.
INTRODUCTION
• It opens a valuable avenue for cancer
screening and monitoring.
• With the rapid development of highly sensitive
and accurate technologies such as next-
generation sequencing, molecular ‘liquid
biopsies’ will quickly become a central piece
in the future.
INTRODUCTION
• These include proteins, RNAs and DNAs.
They can be used in,
• Detection
• Diagnosis
• Monitoring and
• Detection of recurrence of cancer.
• While protein-based tumour markers have
been used in routine pathology for many
years, the ability to detect mutations in
circulating DNA is relatively new.
DEFINITION
• Liquid biopsies are non-invasive
blood tests that detect circulating
tumour cells (CTCs) and fragments
of tumor DNA that are shed into
the blood from the primary tumour
and from metastatic sites.
CIRCULATING TUMOR CELLS
CIRCULATING TUMOR CELLS
• During late 19th century, T.R. Ashworth
first described the presence of epithelial
cells in the blood of a woman with
metastatic breast cancer that were similar
in appearance to her primary tumor cells.
• Indeed, many patients with a variety of
solid tumors, including breast cancer, have
detectable cancer cells circulating in the
bloodstream, so-called circulating tumor
cells (CTCs).
CIRCULATING TUMOR CELLS
• CTCs represent a rare cell population in
the blood, typically less than 10 cells/mL
compared with 1 million WBCs/mL
• However, the detection of CTCs within a
routine blood specimen provides an
opportunity to monitor cancer non-
invasively, in essence a liquid biopsy.
Circulating tumour cell (CTC)
enrichment technologies.
Analysis of CTCs
Yu et al. (2011) J Cell Biol
CIRCULATING TUMOR DNAs
EXOSOMES/MICROVESICLES
• Exosomes are actively released vesicles
(carrying RNA, DNA and protein) and can
function as inter-cellular messengers.
A NEW ADDITION IN LIQUID
BIOPSY…..
TUMOUR EDUCATED
PLATELATES
• Besides tumor cells and their products,
normal cells present in the tumor
microenvironment are also released
into the blood stream.
• These cells can harbor important
information about the tumor.
• Among which platelets have been
studied extensively and gave promising
results.
• The biology behind this new diagnostic
role of Tumor Educated Platelets
(TEPs) is the well-known interaction
between blood platelets and tumor
cells
• This interaction affects not only the
expression of relevant genes in tumor
cells, but also alters the RNA profile
of blood platelets.
• mRNA sequencing of TEPs can be
distinguished from the platelets of
healthy individuals.
INDICATION OF LIQUID BIOSPY
• To monitor residual disease in patients
with known mutations in the primary
tumor.
• To monitor treatment efficacy in patients
• To monitor disease progression and
tumor evolution (i.e. development of
tumor resistance).
• Help the physician explore other
options of treatment when the patient
is resistant to current therapies.
• Provide an alternative method for
biopsy when tissue is difficult to
obtain or not available, or when the
primary site of metastatic disease is
unknown.
• It also provide an alternative method for
biopsy when the quantity of tissue
obtained in a biopsy sample is limited and
traditional molecular genotyping is
requested.
• Provide prognostic information.
CANCER AND SOMATIC
MUTATIONS
• The majority of cancers arise after a series
of somatic gene mutations that
accumulate during an individual’s lifetime
• Identifying and understanding the somatic
alterations in an individual’s tumor can be
crucial in cancer diagnosis and in planning
personalized cancer treatment, monitoring
response to therapy, and identifying
cancer recurrence
CANCER AND SOMATIC
MUTATIONS
• Moreover, as a tumor progresses, some
times it continues to acquire additional
alterations that can affect the response to
therapeutic agents such as chemotherapy
or targeted therapies.
• Distant metastases can harbor unique
genomic characteristics not detectable in
the corresponding primary tumor of the
same patient
CANCER AND SOMATIC
MUTATIONS
• Moreover, metastases located at different
sites show a considerable intra-patient
heterogeneity.
• Thus, the mere analysis of the resected
primary tumor alone (current standard
practice in oncology) or, if possible, even re-
evaluation of tumor characteristics based on
the biopsy of the most accessible metastasis
may not reveal sufficient information for
treatment decisions
Novel diagnostic biomarkers used in the
clinic for various types of cancers and their
targeted drug therapy.
Is this the end of tissue biopsies?
“Tissue biopsy will remain the gold standard
for the next couple of years. As scientific
knowledge advances, researchers are
learning more about the potential of liquid
biopsies to detect mutations.
• At the moment, liquid biopsies are
recommended when a tissue biopsy is
difficult, such as in the case of lung
cancer, or when the original site of the
disease is unknown.
Liquid biopsies have a powerful role in
helping patients get to the right treatment.
CONCLUSION
• Molecular analysis of cancer is required to
optimise patient treatment
• New methods such as next generation
sequencing show immense promise for the
future
• Liquid biopsy is coming of age and will
change practice – it will enable oncologists
to use drugs intelligently to combat
changes in individual cancers as they
happen
references
• Tumor-Educated Platelets as Liquid
Biopsy in Cancer Patients (PDF Download
Available). Available from:
https://www.researchgate.net/publication/2
84112407_Tumor-
Educated_Platelets_as_Liquid_Biopsy_in_
Cancer_Patients [accessed Jul 18, 2017].
THANK YOU

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Liquid Biopsy

  • 1. LIQUID BIOPSY Dr. Manan Shah Dr. ML Harendra Kumar
  • 2. CONTENTS • Introduction • Definition • What comes under liquid biopsy • Circulating tumor cells (CTCs) • Circulating tumor DNAs (ctDNAs) • A new addition in liquid biopsy • Indications of liquid biopsy • Comparisons of somatic mutation expression in ctDNAs and primary tumour • Tumour biopsy & liquid biopsy • Summary • References
  • 3. Molecular diagnostic scheme representing routine biological specimens and their molecular alterations.
  • 4. INTRODUCTION • The diagnosis of cancer has undergone a paradigm shift. • No longer is cancer diagnosed only based on morphological parameters. • More and more the diagnostic algorithm is supported by immunohistochemical and molecular alterations at the DNA, mRNAs, miRNAs and proteomic level.
  • 5. INTRODUCTION • Multiple platforms and technological advances enable faster and cheaper analysis of all these as well as the whole genome. • Recent scientific advances in understanding circulating tumor cells, cell-free DNA/RNA, and exosomes in blood have laid a solid foundation for the development of routine molecular ‘liquid biopsies’.
  • 6. INTRODUCTION • This approach provides non-invasive access to genetic information – somatic mutations, epigenetic changes, and differential expression – about the physiological conditions of body and diseases. • Liquid biopsy has the potential to provide information about cancers without invasive biopsy, using circulating biomarkers.
  • 7. INTRODUCTION • It opens a valuable avenue for cancer screening and monitoring. • With the rapid development of highly sensitive and accurate technologies such as next- generation sequencing, molecular ‘liquid biopsies’ will quickly become a central piece in the future.
  • 8. INTRODUCTION • These include proteins, RNAs and DNAs. They can be used in, • Detection • Diagnosis • Monitoring and • Detection of recurrence of cancer. • While protein-based tumour markers have been used in routine pathology for many years, the ability to detect mutations in circulating DNA is relatively new.
  • 9. DEFINITION • Liquid biopsies are non-invasive blood tests that detect circulating tumour cells (CTCs) and fragments of tumor DNA that are shed into the blood from the primary tumour and from metastatic sites.
  • 10.
  • 11.
  • 13. CIRCULATING TUMOR CELLS • During late 19th century, T.R. Ashworth first described the presence of epithelial cells in the blood of a woman with metastatic breast cancer that were similar in appearance to her primary tumor cells. • Indeed, many patients with a variety of solid tumors, including breast cancer, have detectable cancer cells circulating in the bloodstream, so-called circulating tumor cells (CTCs).
  • 14. CIRCULATING TUMOR CELLS • CTCs represent a rare cell population in the blood, typically less than 10 cells/mL compared with 1 million WBCs/mL • However, the detection of CTCs within a routine blood specimen provides an opportunity to monitor cancer non- invasively, in essence a liquid biopsy.
  • 15. Circulating tumour cell (CTC) enrichment technologies.
  • 16.
  • 17. Analysis of CTCs Yu et al. (2011) J Cell Biol
  • 19.
  • 20.
  • 21.
  • 23. • Exosomes are actively released vesicles (carrying RNA, DNA and protein) and can function as inter-cellular messengers.
  • 24. A NEW ADDITION IN LIQUID BIOPSY…..
  • 26.
  • 27. • Besides tumor cells and their products, normal cells present in the tumor microenvironment are also released into the blood stream. • These cells can harbor important information about the tumor.
  • 28. • Among which platelets have been studied extensively and gave promising results. • The biology behind this new diagnostic role of Tumor Educated Platelets (TEPs) is the well-known interaction between blood platelets and tumor cells
  • 29. • This interaction affects not only the expression of relevant genes in tumor cells, but also alters the RNA profile of blood platelets. • mRNA sequencing of TEPs can be distinguished from the platelets of healthy individuals.
  • 30.
  • 31. INDICATION OF LIQUID BIOSPY • To monitor residual disease in patients with known mutations in the primary tumor. • To monitor treatment efficacy in patients • To monitor disease progression and tumor evolution (i.e. development of tumor resistance).
  • 32. • Help the physician explore other options of treatment when the patient is resistant to current therapies. • Provide an alternative method for biopsy when tissue is difficult to obtain or not available, or when the primary site of metastatic disease is unknown.
  • 33. • It also provide an alternative method for biopsy when the quantity of tissue obtained in a biopsy sample is limited and traditional molecular genotyping is requested. • Provide prognostic information.
  • 34. CANCER AND SOMATIC MUTATIONS • The majority of cancers arise after a series of somatic gene mutations that accumulate during an individual’s lifetime • Identifying and understanding the somatic alterations in an individual’s tumor can be crucial in cancer diagnosis and in planning personalized cancer treatment, monitoring response to therapy, and identifying cancer recurrence
  • 35. CANCER AND SOMATIC MUTATIONS • Moreover, as a tumor progresses, some times it continues to acquire additional alterations that can affect the response to therapeutic agents such as chemotherapy or targeted therapies. • Distant metastases can harbor unique genomic characteristics not detectable in the corresponding primary tumor of the same patient
  • 36. CANCER AND SOMATIC MUTATIONS • Moreover, metastases located at different sites show a considerable intra-patient heterogeneity. • Thus, the mere analysis of the resected primary tumor alone (current standard practice in oncology) or, if possible, even re- evaluation of tumor characteristics based on the biopsy of the most accessible metastasis may not reveal sufficient information for treatment decisions
  • 37.
  • 38. Novel diagnostic biomarkers used in the clinic for various types of cancers and their targeted drug therapy.
  • 39.
  • 40.
  • 41.
  • 42. Is this the end of tissue biopsies? “Tissue biopsy will remain the gold standard for the next couple of years. As scientific knowledge advances, researchers are learning more about the potential of liquid biopsies to detect mutations.
  • 43. • At the moment, liquid biopsies are recommended when a tissue biopsy is difficult, such as in the case of lung cancer, or when the original site of the disease is unknown.
  • 44. Liquid biopsies have a powerful role in helping patients get to the right treatment.
  • 45. CONCLUSION • Molecular analysis of cancer is required to optimise patient treatment • New methods such as next generation sequencing show immense promise for the future • Liquid biopsy is coming of age and will change practice – it will enable oncologists to use drugs intelligently to combat changes in individual cancers as they happen
  • 46.
  • 47.
  • 48.
  • 49.
  • 50.
  • 51.
  • 52. references • Tumor-Educated Platelets as Liquid Biopsy in Cancer Patients (PDF Download Available). Available from: https://www.researchgate.net/publication/2 84112407_Tumor- Educated_Platelets_as_Liquid_Biopsy_in_ Cancer_Patients [accessed Jul 18, 2017].

Editor's Notes

  1. mRNA= Messenger RNA miRNA= micro RNAs. They are small non coding RNA molecules. Fun= RNA silencing and post transcriptional regulation of gene expression.
  2. How tumour survive in body: Tumour cells will not have antigen on surface. Tumor cells will have weak antigen on their surface. Tumor cells will shed the antigen which are on their surface. Sheilding effect by platelets.
  3. The sensitivity for the MAGE and hTERT combination in the group with malignant diseases was 58.9%. The expression level of MAGE was lower compared with that of hTERT in the cancer cell lines, but the sensitivities for MAGE were similar to those for hTERT as MAGE expression was amplified using nested PCR. The reported sensitivities of RT-qPCR have varied, including 39 and 70% in breast cancer (21,25), 82% in lung cancer (26), 59% in gastric cancer (27) and 25% in colorectal cancer (28).