1.
Thomas Ingraham
Publishing Editor, F1000Research
thomas.ingraham@f1000.com

2.
Conventional publishing Model

3.
F1000research publishing Model

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Enabling early access to results
Pre-print server OA Journal
Early access to results & data Editorial input
Precedence for authors Peer review & indexing
Multiple versions Publication ethics
No Editor in Chief Perfected paper OA

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Open peer review
Decision based on
scientific soundness

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Versioning

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Versioning

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Publishing data & code

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publishing raw data and source code
Uses
•Exploratory analyses, LOD, reproducibility checks (data,
reanalyses + software)
Linking with Research Articles
•Better metadata/documentation
•Quality control
Software Tool Articles & Data Articles
•Big/small datasets – no analyses
•Software packages/web tools
•Even better metadata/documentation
•Versioning – updates & point releases
•High visibility
•More credit (quantity and quality)

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Requirements for data and code
Interoperable formats
Metadata
All?

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Workflow & repositories
Submission
Pre-Pub
Check
Publish
Peer
review
Repository
Crosslink
Further requests
F1000Research
curates approved
repo list

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Credit for data and software
Data availability:
Repository: Data entry title, PID [Ref]
[Ref] Author Names. Data entry title [v].
Repository. Year. PID
Cite the data or the Data Article?
Clear accessibility info and actively encourage data/software citation
Software availability:
Software access (opt): URL
Latest source code (opt): VCS URL
Archived entry: Repository: Software
title, PID [Ref]
Licence: OSI
[Ref] Author Names. Software title [v].
Repository. Year. PID

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INTERGRATION, VISUALIZATION & ANALYSIS OF DATA

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Living figures: Data + Code
Colomb & Brembs: http://f1000research.com/articles/3-176/v1

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Challenges
Sensitive data
•Protected repositories
•HIPPA-compliant (safe harbour)
•DataSHIELD
Other challenges
•Rawness & granularity

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Jisc Bodleian 1-click data submission Project
Reducing the friction data sharing

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SUMMARY: F1000RESEARCH’S APPROACH TO OPEN SCIENCE
• Near-immediate publication
Open, invited peer review conducted after
publication
• Transparent peer-review
Signed referee reports and author responses
published alongside each article
• No editorial bias
Publication of all findings, including null results,
software tools and data notes.
• Data included
All research articles accompanied by the data on
which they are based

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ANNOTATOR PLUGIN

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PREDICTS CITATIONS

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COLLABORATE