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Dmitry Schigel
Virve Viertiö
University of Helsinki
On the wings of bark beetles:
Ips typographus and fungal arrival
to spruce trees in Finland
Outline
• Project: colonization gates
• GBIF.org and databases
• Student projects & Ips story
• Teaching dead wood in 2016
Dmitry Schigel: 2012-2015
Academy of Finland
Colonization gates and establishment
of wood-decaying fungi in European Spruce
In Southern Finland
Metsäkulma, Mäntsälä
Rörstrand, Sipoo
X =
2014 Basel -> GBIF
GBIF.org
Note new e-mail address: dschigel@gbif.org
GBIF BY THE NUMBERS
652,948,064
species occurrence
records
15,882
datasets
804
data-publishing
institutions
• http://www.gbif.org | 01 APR 2016
 O1 spatial and temporal aspects TIME
early colonization events SPACE
 O2 role of Coleoptera as vectors BEETLE
of wood-decaying fungi colonizing living trees
GBIF <- DATA
Colonization gates
Colonization gates: BEETLES & STUDENTS
Maria Faticov, MSc
University of Helsinki
fungivory and host use
Virve Viertiö,
University of Helsinki
MSc project on fungal
dispersal by insects
9
Colonization
of a new
resource
Fungal arrival to trees
• spores and mycelia
• Going thourgh defence
mechanisms of a tree
Animal vectors
Pheromone traps
• emptied once a
week all
summer
• beetles to zip-
lock bags and to
the freezer
• traps washed
with soap water
• catch 2013: total
73 000 beetles
10
Pics: D. Schigel
Air control
• to separate fungi
from the air only vs.
the trap catch
= air + beetles
• Eppendorfs with
fungal spores vs.
greywater from the
beetle washing
11
Pics: Virve Viertiö
>sample1
TTTCCGTAGGTGAACCTGCGGAAGGATCATTAATGAATACAATTCGGTCGGCGGGAAGGAGGGGGAG
CTGTCGCTGGCCTTGTGGCATGTGCACGCTCTCTTTGGAACGTCGGTCGTCTTTCATATTTTCACCAGTG
CACCCAATGTAGGATGCCTCTCCTCCGGGAGGGGGGACCTATGTCTTTTTCAGACGCCCCCACAGTTTA
>sample2
GAAAGTCTCAGAATGTTTACTATCGTCGAACCATGACTTCCAGGAGACGTGGGTCGGCGAGATAAAAG
TTATCACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATG
TAATGTGAATTGCAGATCTACAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCCTCGGTGTTCCG
>sample3
PCR: Fungal ITS1 and ITS2 regions
primers ITS1F – ITS4
• Two sites
• 8 traps checked
• May to October
• Air samples as controls
• Fungal DNA present
• sorting and counting completed
• DNA extracted
-> PCR, Sequncing
Virve Viertiö
MSc student
MSc
project
14
• Using DNA, tens of fungal species / OTUs were detected in
every beetle and air sample
• Molecular identification and statistical analysis ongoing
• Which species of wood decomposing fungi will form a
community here in 10, 20, 50 years?
University of Helsinki
Finland
Moscow State University
Russia
Swedish University
of Agricultural Sciences
2016: Nordic – Russian Boreal Biodiversity
and Data Education Network
Education and outreach
• Polypores of the Białowieża forest Oct 2013
• Biodiversity in dead wood, Helsinki Nov 2013
• Next-gen seq sample prep course, Uppsala Jun 2014
• Biodiversity informatics and data management Jul 2014
• Polypore course, Russia Aug 2014
• Polypore course, Finland: ForBio Sep 2014
• Dead wood meeting, Lammi: SIU May 2015
* * *
• Dead wood meeting & course Lammi, FIN Aug 2016
• Polypores as indicator species Lammi, FIN Sep 2016
• Biodiversity data skills Tartu, EST Nov 2016
FUNGAL ECOLOGY MATHEMATICAL BIOLOGY GROUP
http://blogs.helsinki.fi/deadwoodmeeting
registration until 20 May, may close earlier
SX invertebrate teacher,
Conditions:
teaching for a cup of rice
(& travel, & accomodation)
Photo: Dmitry Schigel,
Virve Viertiö
Thank you!

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Schigel DS, Viertiö V 2016: On the wings of bark beetles: Ips typographus and fungal arrival to spruce trees in Finland. IX symposium on the conservation of saproxylic beetles, Genk, Belgium; oral presentation.

Editor's Notes

  1. New email address Traits Citizen science
  2. GBIF logo to add in bottom left
  3. When and how do the wood decomposing fungi arrive to trees? Does the bark beetle Ips typographus vector some wood decomposing fungi to the trees it attacks? Is there a difference in the fungal community carried by the beetle’s 1st and 2nd generation?
  4. We use DNA to detect and to quantify species, testing hypothesis and molecular curiosity, Sonja
  5. New network name
  6. Other events include species identification and sample preparetion skills, data management skills and finally, dead wood symposium
  7. A few snapshots from these courses; important, try to recall the event, the person or the book that made you decide that you would like to be a biologists, or to work with biologists
  8. Screenshots from 2015 Group photo, programme Archive slides!
  9. POSter Almost a society, beetles, fungi, Almost have a journal Almost have a website and social media groups Almost have a conferences Almost have a study programme.