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Effects of Open Access and the power of scientific
                  communities
                      Tom Olijhoek


               Open Knowledge Foundation




                      Wageningen UR Library


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Comparing
                                                                             Tools for use
Definition and    Open Access      The cost of    Effects of   How to get
                                                                              with Open
    Needs        and Toll Access   Open Access   Open Access   Open Access
                                                                               Access
                   publishing
Open Access is completely free and unrestricted
       access to Publications and Data

 A detailed Definition was published by the Budapest Open
 Access Initiative in 2001 (BOAI Definition) and an Update
                was published this year (2012)

 @ccess, the open access initiative at the Open Knowledge
              Foundation uses this Definition

In addition we strongly recommend using Creative Commons
     licenses, CC-BY for publications and CC0 for Data
whoneedsaccess.org

     All People NOT only scientists
 need access to research but can‟t get it
     because of
with Open Access 40% of new readers are
         from outside academia




                              Marcha_por_la_Educación_en_Santiago
“more than three-quarters of researchers based in the developing world consider lack of access
                     both to be unethical and costing lives” ( MW Survey)


           SURVEY RESULTS                              Testimonials MalariaWorld
           MALARIAWORLD
                                                  Research resources for diseases of the poor must be made available
                                                  without cost to the poor and those who are committed to helping them
95% of respondents agreed or strongly agreed      .
 to the „statement that Scientific articles on    Our management discourages us from supporting new open access
 malaria should be available for free to all in   journals due to their low, or unassigned, impact factor.
                 need of it‟
                                                  When did scientists start agreeing with this slave-type of agreement
                                                  with publishing houses? How could this nonsense have started? We
 Only 2% never experience access problems         inherited this sick system, but that does not mean we should allow it to
                                                  continue

 In Africa, South America, and Asia, 41, 79,      at my university the department only pay publication fees for persons
 and 92% of the respondents , respectively,       with a permanent position. The rest of us have to find the money
claimed never to use HINARI or did not even       somehow - or bribe a prof
           know about its existence
                                                  Open-source is not without downsides. I favor a mixed model in
                                                  developed countries with open access for developing countries.
    TRANSFER of COPYRIGHTS
  (since 1998!)

 RIGHT TO READ BUT NOT TO USE

 PAY PER VIEW
1,350 $ / article                                 5,333 $ / article

                      4 x less than Toll Access                              TOTAL 16 billion
                   Eventually cost may go down to                    These are cost for funding agencies
                            250 $ / article                            On TOTAL Budget 300 billion

                Open access publishing                                Research funding now
              will then eventually be 20 x                           needs 5 % for publishing
               cheaper than Toll Access

Sources: http://www.stm-assoc.org/2009_10_13_MWC_STM_Report.pdf
SVPOW :http://svpow.com/2012/07/18/what-does-it-cost-to-publish-a-
paywalled-paper-with-anyone/
SOMEHOW SOMEWHERE SOMEONE IS GOING TO PAY




     WHO PAYS?                   IS OPEN ACCESS SUSTAINABLE?

Less than 1% of current         Several studies show: OA benefits outweigh
science funding will easily
cover the cost of open          the costs by a factor of 5 or more
access publishing
                                Houghton (2009-2010)
Funders and libraries are       Swan (2010)
now paying 5 % or $ 15          Brembs (2011)
billion on a total funding of   CED DCC final Report 2012
$ 300 billion
The effects of Open Access
“




    Science &
                  Politics     Economics
    Education

       Open          Open
                               development
      science     government



       Open        Informed
                                innovation
     education      citizens
Open Access improves the quality of science


   OA enables new ways              Open Access improves the
   of measuring Impact                 quality of science

         Articles can be                Open Science prevents
       reviewed by many                        fraud


         Downloads &                     Open data prevents data
       social media buzz                       tampering
         reflect impact
                                        Open access enables
                                           new forms of             Michael
        Include impact in other areas    collaboration and
                than science                 discovery              Nielsen
                                                                    Reinventing
                                                                     Discovery
                                           Open access enables citizen
                                                    science
The Impact Factor is a main obstruction to
             Open Access
The current publishing model exploits scientists' addiction to
Impact Factor. There is methadone OA, and then there's getting
clean.
Ethan Perlstein.
scientists are hesitant to publish in open access journals because
employers are always looking at impact factor

Sick of Impact Factors
I am sick of impact factors and so is science.
The impact factor might have started out as a good idea, but its
time has come and gone
Stephen Currey

How to get rid of the Impact Factor


Björn Brembs & Peter Binfield
PLoS Medicine, IF 2-11 (8.4)
                 (The PLoS Medicine Editors (2006) The
  Negotiable     Impact Factor Game. PLoS Med 3(6): e291.




Irreproducible   Rossner M, van Epps H, Hill E (2007): Show me the
                 data. The Journal of Cell Biology, Vol. 179, No. 6,
                 1091-1092

Mathematically
   unsound       Weak correlation of individual article citation rate
                 with journal IF


                                 Björn Brembs
                                 http://www.slideshare.net/brembs/limited-
                                 access-is-a-symptom-not-the-disease
„New‟ Definition of Scientific Impact
A-Vector: introducing a new form of journal
                            level metrics

             Quality of editorial board           Quality of peer-review
         •   Citation index               • “Transparency” indicators
         •   Reputation                   •   Criteria used by reviewers
         •   Collaboration                •   Duration of review process
         •   Reference density            •   Post-publication comments
                                          •   Openness about
                                              •   submission and Rejection rates
         • More indicators                    •    potential conflicts of interest
                                              •   Aims, scopes and expected readership
                                              •   Reviewer‟s comments and editorial
                                                  correspondence ( published alongside
                                                  papers

                                          • More indicators



A-vector: a new tool for quality
Assessment of OA journals
Less important
                        Less
 Less fraud                            where you
                     duplication
                                        publish
                     Better use of
Open data better       resources         All journal
    control of                         content online
scientific quality       More          and accessible
                     collaboration


     Open                             Reputation not
                      Shorter time
  publications                          because of
                        between
                                      selectivity but
   Less bias          research and
                                        because of
 Crowd control          practice
                                          quality
OPEN ACCESS TO PUBLICATIONS
         AND DATA

MORE VISIBILITY OF
  PLAGIARISM
  FABRICATED DATA
   PUBLICATION BIAS

MORE DIFFICULT TO
  LEAVE OUT DATA
  SELECT SPECIFIC RESULTS
Pharmaceutical companies “hide” negative results for
                     medicines GSK paid 3 billion fines because of fraud with paxol
                                                        publications




                                          Side effects are often not published



                  High percentage of medical publications are based on flawed experiments

                    RESULT: MANY PEOPLE SUFFER FROM
                     BAD MEDICINES AND EVEN FROM
                        UNNECESSARY TREATMENTS
Sources: Howard Brody | Ben Goldacre | Richard Smith | John Ioannidis
OA enables higher education for all through
the internet
• eLearning initiatives like Coursera, eDX, Udacity



Level of education will rise rapidly

• More education - more economic and social
  development
Science is the
                                                            Open Access opens      motor for
                                                             Science for All       economic
Open Access crucial for                                                          development
scientists in the global south
 conference The Hague 25 oct 2012
as long as scientific output remains behind walls of paid
content, no possibility for a dialogue will exist                               Participation of
                                                                                 scientists from
                                                             Research is the
                                                                                Africa, Asia and
                                                             key to fighting
                                                                                 Latin America
                                                                disease
                                                                                is necessary for
                                                                                     success
How to Get Open Access


  Scientists hold the power in
       their own hands

Attitude change is crucial


Coordination of scientist networked
communities

Structured information and focused
communities
“When I light my candle from yours, I gain from you without subtracting from you. That’s what
                          sharing knowledge is like”. Peter Suber




         Open Access                                  Toll Access
              getting new ideas by
                                                         fear of losing ideas
                     sharing

                   Collaboration                             Competition

                Publish for impact                         Publish or perish

                 Focus on quality                         Focus on quantity
Someone needs to
 The open                         coordinate these
               No consensus        communities
   access
               on what open
movement is
                 access is
fragmented                     WHO?




                                      Open Knowledge
No consensus                           Foundation??
               Need to build
 on the best
               communities
form of open                          @ccess OKFN?
               with common
   access
                   ideas
 publishing
                                      OpenWetware?
We Need to                         information
                                  And                      it USABLE



           Datahubs

                                   repositories


                                                                 libraries



Archives




                                                                              OA journals




     Social media
                                  Scientist                      Databases
                                  networks
                                                  Discussion
                      Indexing                    platforms
                       services
In order to make optimal use of all
                                          possibilities of Open Access



                                                  Main Task

                      COMMUNITIES                         BE A SOURCE
                      FOCUSSED ON                              OF
                         TOPICS                           INFORMATION
                                                             FOR ALL
African networks
like ir-africa.info                   PatientslikeMe




ResearchGate

                                        MalariaWorld
                                                              MalariaWorld is a model
                                                              open access community
                                                               for malaria research
      MyScienceWork                 Ecancer.org
Platform for collaboration
                                       POSSIBLE PARTNERS
              ORGANIZE DATA
                                       Scientific libraries
                Open Data archive      Open access publishers
               Publication archive
               Archive for preprints
                                       PubmedCentral
                Tool development       EU openair
               Reference managing
                                       World Bank

                                       UN



Discussion, forum, news, jobs,
OA Journal
BIBSOUP
                         OPEN
DATA-HUB   ALTMETRICS   ACCESS
           REPUTATION   INDEX
  WIKI        INDEX
            A-VECTOR
BibSoup: Malaria Database 2010-2011 used by MalariaWorld
                                                   Examples of use



                                         cc-by 2.5




                       unknown
                                             cc-by 2.0




  Graphical representation of types of licences            Graphical representation of the 1000 most
  in the malaria database. The largest part is             cited articles in the malaria database. The
  “unknown”                                                Header in the figure is the nr 1 citation



Open Access and the role of
scientific communities
 Tom Olijhoek & Mark McGillivray
Malaria Open Access Index
                            developed in collaboration with MalariaWorld
                                                       HOW OPEN IS MALARIA RESEARCH?




                                                                                                J1 Percentage of a articles
                                                                                                        on malaria
                                                                                                   in a journal that are
                                                                                                       Open Access
                                                                                                          (Y-axis)

                                                                                                J2 Percentage of the grand
                                                                                                   total of OA malaria
                                                                                                 articles that one journal
                                                                                                         publishes
                                                                                                          X-axis)


     The nine bubbles along the top, from left to right(be careful to note the thin sliver of    PLoSOne (brown) and
     red that is bubble 6) * BMC Public Health * BMC Inf.Diseases * BMC                         Malaria Journal (blue) have
     Genomics * PLoS Medicine * PLoS Pathogens * Parasites and Vectors *                              highest index
     PLoS Negl Trop Diseases * PLoS One * Malaria Journal And finally the small
     one on the bottom left: * Virology Journal


Open Access and the role of
scientific communities
 Tom Olijhoek & Mark McGillivray
OpenWetWare is an effort to         Open Source Drug Discovery (OSDD) is the
                                    concept of drug discovery where all data and
promote the sharing of              ideas are shared in real time, and anyone may
information, know-how, and          participate at any level. This prior disclosure
wisdom among researchers and        means that will be no patents and that any
groups who are working in biology   technology is both academically and
& biological engineering            commercially exploitable by whoever wishes to
                                    do so.
Pilot research
                                                          communities focus on
                                                          tropical diseases:


 Open Source Biomedical Research for the 21st Century
An open, collaborative research community will find new
ways to do science, answering questions that current
institutions find difficult or impossible.
                                                          Diseases found exclusively in
                                                          tropical regions predominantly afflict
                                                          poor people in developing countries.
                                                          The typical profit-driven
                                       /                  pharmaceutical economic model fails
                                                          with these diseases …………

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OAA12 - The effects of making information available and the power of scientific communities

  • 1. Effects of Open Access and the power of scientific communities Tom Olijhoek Open Knowledge Foundation Wageningen UR Library This work is licensed under a
  • 2. You are free to: Copy, share, adapt, or re-mix; Photograph, film, or broadcast; Blog, live-blog, or post video of; This presentation. Provided that: You attribute the work to its author and respect the rights and licenses associated with its components. Slide Concept by Cameron Neylon, who has waived all copyright and related or neighbouring rights. This slide only ccZero. Social Media Icons adapted with permission from originals by Christopher Ross. Original images are available under GPL at; http://www.thisismyurl.com/free-downloads/15-free-speech-bubble-icons-for-popular-websites
  • 3. Comparing Tools for use Definition and Open Access The cost of Effects of How to get with Open Needs and Toll Access Open Access Open Access Open Access Access publishing
  • 4. Open Access is completely free and unrestricted access to Publications and Data A detailed Definition was published by the Budapest Open Access Initiative in 2001 (BOAI Definition) and an Update was published this year (2012) @ccess, the open access initiative at the Open Knowledge Foundation uses this Definition In addition we strongly recommend using Creative Commons licenses, CC-BY for publications and CC0 for Data
  • 5. whoneedsaccess.org All People NOT only scientists need access to research but can‟t get it because of with Open Access 40% of new readers are from outside academia Marcha_por_la_Educación_en_Santiago
  • 6. “more than three-quarters of researchers based in the developing world consider lack of access both to be unethical and costing lives” ( MW Survey) SURVEY RESULTS Testimonials MalariaWorld MALARIAWORLD Research resources for diseases of the poor must be made available without cost to the poor and those who are committed to helping them 95% of respondents agreed or strongly agreed . to the „statement that Scientific articles on Our management discourages us from supporting new open access malaria should be available for free to all in journals due to their low, or unassigned, impact factor. need of it‟ When did scientists start agreeing with this slave-type of agreement with publishing houses? How could this nonsense have started? We Only 2% never experience access problems inherited this sick system, but that does not mean we should allow it to continue In Africa, South America, and Asia, 41, 79, at my university the department only pay publication fees for persons and 92% of the respondents , respectively, with a permanent position. The rest of us have to find the money claimed never to use HINARI or did not even somehow - or bribe a prof know about its existence Open-source is not without downsides. I favor a mixed model in developed countries with open access for developing countries.
  • 7. TRANSFER of COPYRIGHTS (since 1998!)  RIGHT TO READ BUT NOT TO USE  PAY PER VIEW
  • 8. 1,350 $ / article 5,333 $ / article 4 x less than Toll Access TOTAL 16 billion Eventually cost may go down to These are cost for funding agencies 250 $ / article On TOTAL Budget 300 billion Open access publishing Research funding now will then eventually be 20 x needs 5 % for publishing cheaper than Toll Access Sources: http://www.stm-assoc.org/2009_10_13_MWC_STM_Report.pdf SVPOW :http://svpow.com/2012/07/18/what-does-it-cost-to-publish-a- paywalled-paper-with-anyone/
  • 9.
  • 10. SOMEHOW SOMEWHERE SOMEONE IS GOING TO PAY WHO PAYS? IS OPEN ACCESS SUSTAINABLE? Less than 1% of current Several studies show: OA benefits outweigh science funding will easily cover the cost of open the costs by a factor of 5 or more access publishing Houghton (2009-2010) Funders and libraries are Swan (2010) now paying 5 % or $ 15 Brembs (2011) billion on a total funding of CED DCC final Report 2012 $ 300 billion
  • 11. The effects of Open Access “ Science & Politics Economics Education Open Open development science government Open Informed innovation education citizens
  • 12. Open Access improves the quality of science OA enables new ways Open Access improves the of measuring Impact quality of science Articles can be Open Science prevents reviewed by many fraud Downloads & Open data prevents data social media buzz tampering reflect impact Open access enables new forms of Michael Include impact in other areas collaboration and than science discovery Nielsen Reinventing Discovery Open access enables citizen science
  • 13. The Impact Factor is a main obstruction to Open Access The current publishing model exploits scientists' addiction to Impact Factor. There is methadone OA, and then there's getting clean. Ethan Perlstein. scientists are hesitant to publish in open access journals because employers are always looking at impact factor Sick of Impact Factors I am sick of impact factors and so is science. The impact factor might have started out as a good idea, but its time has come and gone Stephen Currey How to get rid of the Impact Factor Björn Brembs & Peter Binfield
  • 14. PLoS Medicine, IF 2-11 (8.4) (The PLoS Medicine Editors (2006) The Negotiable Impact Factor Game. PLoS Med 3(6): e291. Irreproducible Rossner M, van Epps H, Hill E (2007): Show me the data. The Journal of Cell Biology, Vol. 179, No. 6, 1091-1092 Mathematically unsound Weak correlation of individual article citation rate with journal IF Björn Brembs http://www.slideshare.net/brembs/limited- access-is-a-symptom-not-the-disease
  • 15. „New‟ Definition of Scientific Impact
  • 16. A-Vector: introducing a new form of journal level metrics Quality of editorial board Quality of peer-review • Citation index • “Transparency” indicators • Reputation • Criteria used by reviewers • Collaboration • Duration of review process • Reference density • Post-publication comments • Openness about • submission and Rejection rates • More indicators • potential conflicts of interest • Aims, scopes and expected readership • Reviewer‟s comments and editorial correspondence ( published alongside papers • More indicators A-vector: a new tool for quality Assessment of OA journals
  • 17. Less important Less Less fraud where you duplication publish Better use of Open data better resources All journal control of content online scientific quality More and accessible collaboration Open Reputation not Shorter time publications because of between selectivity but Less bias research and because of Crowd control practice quality
  • 18. OPEN ACCESS TO PUBLICATIONS AND DATA MORE VISIBILITY OF PLAGIARISM FABRICATED DATA  PUBLICATION BIAS MORE DIFFICULT TO LEAVE OUT DATA SELECT SPECIFIC RESULTS
  • 19. Pharmaceutical companies “hide” negative results for medicines GSK paid 3 billion fines because of fraud with paxol publications Side effects are often not published High percentage of medical publications are based on flawed experiments RESULT: MANY PEOPLE SUFFER FROM BAD MEDICINES AND EVEN FROM UNNECESSARY TREATMENTS Sources: Howard Brody | Ben Goldacre | Richard Smith | John Ioannidis
  • 20. OA enables higher education for all through the internet • eLearning initiatives like Coursera, eDX, Udacity Level of education will rise rapidly • More education - more economic and social development
  • 21. Science is the Open Access opens motor for Science for All economic Open Access crucial for development scientists in the global south conference The Hague 25 oct 2012 as long as scientific output remains behind walls of paid content, no possibility for a dialogue will exist Participation of scientists from Research is the Africa, Asia and key to fighting Latin America disease is necessary for success
  • 22. How to Get Open Access Scientists hold the power in their own hands Attitude change is crucial Coordination of scientist networked communities Structured information and focused communities
  • 23. “When I light my candle from yours, I gain from you without subtracting from you. That’s what sharing knowledge is like”. Peter Suber Open Access Toll Access getting new ideas by fear of losing ideas sharing Collaboration Competition Publish for impact Publish or perish Focus on quality Focus on quantity
  • 24. Someone needs to The open coordinate these No consensus communities access on what open movement is access is fragmented WHO? Open Knowledge No consensus Foundation?? Need to build on the best communities form of open @ccess OKFN? with common access ideas publishing OpenWetware?
  • 25. We Need to information And it USABLE Datahubs repositories libraries Archives OA journals Social media Scientist Databases networks Discussion Indexing platforms services
  • 26. In order to make optimal use of all possibilities of Open Access Main Task COMMUNITIES BE A SOURCE FOCUSSED ON OF TOPICS INFORMATION FOR ALL African networks like ir-africa.info PatientslikeMe ResearchGate MalariaWorld MalariaWorld is a model open access community for malaria research MyScienceWork Ecancer.org
  • 27. Platform for collaboration POSSIBLE PARTNERS ORGANIZE DATA Scientific libraries Open Data archive Open access publishers Publication archive Archive for preprints PubmedCentral Tool development EU openair Reference managing World Bank UN Discussion, forum, news, jobs, OA Journal
  • 28. BIBSOUP OPEN DATA-HUB ALTMETRICS ACCESS REPUTATION INDEX WIKI INDEX A-VECTOR
  • 29. BibSoup: Malaria Database 2010-2011 used by MalariaWorld Examples of use cc-by 2.5 unknown cc-by 2.0 Graphical representation of types of licences Graphical representation of the 1000 most in the malaria database. The largest part is cited articles in the malaria database. The “unknown” Header in the figure is the nr 1 citation Open Access and the role of scientific communities Tom Olijhoek & Mark McGillivray
  • 30. Malaria Open Access Index developed in collaboration with MalariaWorld HOW OPEN IS MALARIA RESEARCH? J1 Percentage of a articles on malaria in a journal that are Open Access (Y-axis) J2 Percentage of the grand total of OA malaria articles that one journal publishes X-axis) The nine bubbles along the top, from left to right(be careful to note the thin sliver of PLoSOne (brown) and red that is bubble 6) * BMC Public Health * BMC Inf.Diseases * BMC Malaria Journal (blue) have Genomics * PLoS Medicine * PLoS Pathogens * Parasites and Vectors * highest index PLoS Negl Trop Diseases * PLoS One * Malaria Journal And finally the small one on the bottom left: * Virology Journal Open Access and the role of scientific communities Tom Olijhoek & Mark McGillivray
  • 31. OpenWetWare is an effort to Open Source Drug Discovery (OSDD) is the concept of drug discovery where all data and promote the sharing of ideas are shared in real time, and anyone may information, know-how, and participate at any level. This prior disclosure wisdom among researchers and means that will be no patents and that any groups who are working in biology technology is both academically and & biological engineering commercially exploitable by whoever wishes to do so.
  • 32. Pilot research communities focus on tropical diseases: Open Source Biomedical Research for the 21st Century An open, collaborative research community will find new ways to do science, answering questions that current institutions find difficult or impossible. Diseases found exclusively in tropical regions predominantly afflict poor people in developing countries. The typical profit-driven / pharmaceutical economic model fails with these diseases …………