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Kate LeMay
Publishing and sharing sensitive data
Senior Research Data Specialist
28 June 2016
The Australian National Data Service (ANDS) makes
Australia’s research data assets more valuable for
researchers, research institutions and the nation.
Workshop outcomes
• What health and sensitive data are
• What legal and ethical issues you need to consider
before publishing and sharing health data
• How to plan for data sharing in research ethics
applications and consent forms
• How data may be confidentialised
• How to licence human data for re-use
• What’s happening at the Menzies
Why would you share data??!
Data
sharing
Discoverable
and citable
Pubs with
data cited
more
often
Collaborations
and
publications
Secure and
ongoing
storage in
repositories
Replicate or
extend
findings
Reduces
burden on
participants
Ethical
obligation
(clinical
trials)
Which data???
Sensitive data
What makes
medical and health
data sensitive?
Personal (identifiable) information
+ potential for harm or discrimination
It can be done safely and ethically
Plan to publish
DISCUSSION: 5 minutes
Concerns about sharing
data?
What do you hope to get
out of this workshop?
Data sharing landscape
Funders
NHMRC Statement on Data Sharing
New Human Research Ethics Application (HREA – replaces NEAF)
National Statement on Ethical Conduct in Human Research (S2 consent to future use)
Discovery, linkage Data Management Plan
International funders
Many are
mandating
data sharing
Journals
BMJ 2015;350:h2373
http://journals.plos.org/plosone/s/data-availability
http://www.icmje.org/news-and-editorials/M15-2928-PAP.pdf
…researchers will consider and document the following:
• participant consent to retain or re-use de-identified data
• length of time data must be kept, how and by whom it will be archived,
disposed of or destroyed at the end of the retention period. Secure storage
and controlled access
• metadata (description of the anticipated data to be generated), which will point
to the original data, so the original data is discoverable accessible and, where
appropriate, shareable beyond the end of the project
University of Tasmania
http://www.utas.edu.au/__data/assets/pdf_file/0008/412001/Management-of-Research-Data-Procedure.pdf
Data sharing is on the horizon
Plan to Publish
NHMRC Statement on Data Sharing (2016)
https://www.nhmrc.gov.au/grants-funding/policy/nhmrc-statement-data-sharing
Ethics and consent
Legal: Privacy Law
Privacy Act (1988, s6)
Personal information
+
One or more of: health, genetic, biometric, political
=
Sensitive information
Cannot be used beyond original purpose of collection
without consent
Ethics
• Informed consent
• Avoid harm (=remove/minimise sensitivity)
• Where possible, modify data to protect
privacy i.e. confidentialising data
• Conditions around access to data
• Ethics committee approval
Informed consent
1. Avoid precluding data confidentialisation,
publication and sharing
2. State possibility of future data publication
3. State conditions of access
4. Document consent with collected data to inform
subsequent users
Example wording available in ANDS Guide to
Publishing and Sharing Sensitive Data
Consent form wording examples
‘A de-identified copy of this data may be used for other research purposes.
However, your anonymity will at all times be safeguarded.’
https://www.griffith.edu.au/research/research-services/research-ethics-integrity/human/human-
research-ethics-manual-2014 Section 22 Appendix 1
http://www.data-archive.ac.uk/media/112638/ukdamodelconsent.pdf
Screenshot from: http://genomicsandhealth.org/consent-tools-read-online
Consent form wording examples
Consent form examples: Discussion
Translational Cancer Research Network (NSW Health)
http://www.tcrn.unsw.edu.au/sites/default/files/uploads/images/HSA%20Biobank%20C
onsent%20Form%20V%201%201.pdf
Interuniversity Consortium for Political and Social Research. Guide to Social Science
Data Preparation and Archiving: Best Practice Throughout the Data Life Cycle. Ann
Arbor, MI: ICPSR. (Page 13)
http://www.icpsr.umich.edu/files/ICPSR/access/dataprep.pdf
Sage Bionetworks Participant-Centered Consent (PCC) toolkit
http://sagebase.org/platforms/governance/econsent/
Toolkit available from https://github.com/Sage-Bionetworks/PCC-Toolkit
Something to think about later
Open consent for genomic data!
Personal Genome Project
http://www.personalgenomes.org/
Some useful articles about informed consent for open genomic data
http://arep.med.harvard.edu/pdf/Lunshof08.pdf
http://lsspjournal.springeropen.com/articles/10.1186/s40504-014-0020-9
http://genomesunzipped.org/2010/10/why-public-genomics-is-not-a-
purely-personal-decision.php#more-1186
Confidentialising data
Data identifiability
• Individually identifiable
• Re-identifiable
• Non-identifiable
National Statement on Ethical Conduct in Human Research 2007 (Updated May 2015). The
National Health and Medical Research Council, the Australian Research Council and the
Australian Vice-Chancellors’ Committee. Commonwealth of Australia, Canberra. Page 27
Confidentialisation
Removing or altering data so that the people or
subjects of data cannot reasonably be identified
• De-identifying the data (‘how to’ steps in the
ANDS Guide)
• Continuing to manage the risk
Confidentialised data is no longer sensitive
and can be shared
Confidentialisation
1. Direct identifiers
• Remove ALL
• Examples
1. Name
2. Address
3. Phone number
4. Medical device identifiers
2. Indirect identifiers
• 2 or more present may identify participants (triangulation)
• Remove or modify
• Examples
1. Sex
2. Place of birth
3. Household and family composition
Confidentialisation
Removing versus modifying?
• Remove direct identifiers
• Remove OR modify indirect identifiers
Modifying
• If removal de-values the dataset
• Combine responses into categories
• Top and bottom coding
• Rounding times, dates, measurements
• Cell suppression
Licensing
What is a licence?
• A licence sets out how data can be (re)used and
attributed
• All Australian data intended for reuse should have
a licence
What is a licence?
What is a licence?
Why apply a licence?
 Use a licence to tell
others how they can
legally share your work
 Promotes re-use and
enables collaboration
 Gives the owner control
and credit
AusGOAL licensing framework
AusGOAL contains eight licensing options:
 Six Australian Creative Commons (CC) Version
4.0 licences
 Restrictive Licence Template (RLT)
 BSD 3-Clause Software Licence
ANDS endorses AusGOAL
Wide support by Federal and
State Governments
http://www.ausgoal.gov.au
Licensing and data
NOT FOR DATA


Slide is courtesy of Baden Appleyard – Director of AusGOAL
How open can I be?
 Consent? (For what?)
 Potential for harm/discrimination?
 Data modified to address identification, limit harm?
 HREC approval
When CC licence not suitable
Restrictive Licences can ‘bespoke’ your
conditions of access and use
http://www.ausgoal.gov.au/restrictive-
licence-template
*Check with your DM support,
School/Department/Institution to see if
one already exists for you to repurpose
How do I apply a licence?
• You must ‘own’ the data to apply the licence
• Look at your institutional IP policies
• When partnering: agree – before collecting the
data – who can apply the licence and what that
licence will be.
• Include this info in HREC application
How do I apply a licence?
• Just apply the marking (image) and/or statement
• http://creativecommons.org/about/downloads
• http://www.ausgoal.gov.au/sample-copyright-
notices
• Make it visible on the document, repository record,
and/or attached to the data
Repositories and Discovery
Depositing your data
What is a data repository?
A research data repository is a
managed environment capable of
storing and sharing (largely) digital
data. The data repository supports
the process of curating, preserving,
and sharing research data.
Choices about publishing
1. Metadata only
2. Metadata plus mediated access
3. Metadata plus open access
What is metadata?
• Location
• Institutional repository
• Discipline specific repository
• General repository
Repositories
41
(search for repositories)
DOI
Examples of published medical and health data
ANDS Guide to Publishing and Sharing
Sensitive Data
http://www.ands.org.au/guides/sensitivedata
Guide
Conditional
access
Ownership
Licensing
Repositories
How to
confidentialise
Ethics and
consent
Take away
Plan to publish
You have choices
Published is not the same as open
The library and ANDS can help!
http://www.ands.org.au/working-with-data/enabling-data-reuse/medical-and-health
23 (research data) Things
JOIN our virtual group: 23 Things Health Data
Community Group (4 weekly)
Kate LeMay and Julie Toohey (Griffith) co-
organisers
Senior Research Data Specialist
kate.lemay@ands.org.au
Kate LeMay
With the exception of logos, third party images or where otherwise indicated, this
work is licensed under the Creative Commons Australia Attribution 3.0 Licence.
ANDS is supported by the Australian
Government through the National Collaborative
Research Infrastructure Strategy Program.
Monash University leads the partnership with
the Australian National University and CSIRO.

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Publishing and sharing sensitive data 28 June

  • 1. Kate LeMay Publishing and sharing sensitive data Senior Research Data Specialist 28 June 2016
  • 2. The Australian National Data Service (ANDS) makes Australia’s research data assets more valuable for researchers, research institutions and the nation.
  • 3. Workshop outcomes • What health and sensitive data are • What legal and ethical issues you need to consider before publishing and sharing health data • How to plan for data sharing in research ethics applications and consent forms • How data may be confidentialised • How to licence human data for re-use • What’s happening at the Menzies
  • 4. Why would you share data??! Data sharing Discoverable and citable Pubs with data cited more often Collaborations and publications Secure and ongoing storage in repositories Replicate or extend findings Reduces burden on participants Ethical obligation (clinical trials) Which data???
  • 5. Sensitive data What makes medical and health data sensitive? Personal (identifiable) information + potential for harm or discrimination
  • 6. It can be done safely and ethically Plan to publish
  • 7. DISCUSSION: 5 minutes Concerns about sharing data? What do you hope to get out of this workshop?
  • 8. Data sharing landscape Funders NHMRC Statement on Data Sharing New Human Research Ethics Application (HREA – replaces NEAF) National Statement on Ethical Conduct in Human Research (S2 consent to future use) Discovery, linkage Data Management Plan
  • 11. …researchers will consider and document the following: • participant consent to retain or re-use de-identified data • length of time data must be kept, how and by whom it will be archived, disposed of or destroyed at the end of the retention period. Secure storage and controlled access • metadata (description of the anticipated data to be generated), which will point to the original data, so the original data is discoverable accessible and, where appropriate, shareable beyond the end of the project University of Tasmania http://www.utas.edu.au/__data/assets/pdf_file/0008/412001/Management-of-Research-Data-Procedure.pdf
  • 12. Data sharing is on the horizon
  • 13. Plan to Publish NHMRC Statement on Data Sharing (2016) https://www.nhmrc.gov.au/grants-funding/policy/nhmrc-statement-data-sharing
  • 15. Legal: Privacy Law Privacy Act (1988, s6) Personal information + One or more of: health, genetic, biometric, political = Sensitive information Cannot be used beyond original purpose of collection without consent
  • 16. Ethics • Informed consent • Avoid harm (=remove/minimise sensitivity) • Where possible, modify data to protect privacy i.e. confidentialising data • Conditions around access to data • Ethics committee approval
  • 17. Informed consent 1. Avoid precluding data confidentialisation, publication and sharing 2. State possibility of future data publication 3. State conditions of access 4. Document consent with collected data to inform subsequent users Example wording available in ANDS Guide to Publishing and Sharing Sensitive Data
  • 18. Consent form wording examples ‘A de-identified copy of this data may be used for other research purposes. However, your anonymity will at all times be safeguarded.’ https://www.griffith.edu.au/research/research-services/research-ethics-integrity/human/human- research-ethics-manual-2014 Section 22 Appendix 1 http://www.data-archive.ac.uk/media/112638/ukdamodelconsent.pdf
  • 20. Consent form examples: Discussion Translational Cancer Research Network (NSW Health) http://www.tcrn.unsw.edu.au/sites/default/files/uploads/images/HSA%20Biobank%20C onsent%20Form%20V%201%201.pdf Interuniversity Consortium for Political and Social Research. Guide to Social Science Data Preparation and Archiving: Best Practice Throughout the Data Life Cycle. Ann Arbor, MI: ICPSR. (Page 13) http://www.icpsr.umich.edu/files/ICPSR/access/dataprep.pdf Sage Bionetworks Participant-Centered Consent (PCC) toolkit http://sagebase.org/platforms/governance/econsent/ Toolkit available from https://github.com/Sage-Bionetworks/PCC-Toolkit
  • 21. Something to think about later Open consent for genomic data! Personal Genome Project http://www.personalgenomes.org/ Some useful articles about informed consent for open genomic data http://arep.med.harvard.edu/pdf/Lunshof08.pdf http://lsspjournal.springeropen.com/articles/10.1186/s40504-014-0020-9 http://genomesunzipped.org/2010/10/why-public-genomics-is-not-a- purely-personal-decision.php#more-1186
  • 23. Data identifiability • Individually identifiable • Re-identifiable • Non-identifiable National Statement on Ethical Conduct in Human Research 2007 (Updated May 2015). The National Health and Medical Research Council, the Australian Research Council and the Australian Vice-Chancellors’ Committee. Commonwealth of Australia, Canberra. Page 27
  • 24. Confidentialisation Removing or altering data so that the people or subjects of data cannot reasonably be identified • De-identifying the data (‘how to’ steps in the ANDS Guide) • Continuing to manage the risk Confidentialised data is no longer sensitive and can be shared
  • 25. Confidentialisation 1. Direct identifiers • Remove ALL • Examples 1. Name 2. Address 3. Phone number 4. Medical device identifiers 2. Indirect identifiers • 2 or more present may identify participants (triangulation) • Remove or modify • Examples 1. Sex 2. Place of birth 3. Household and family composition
  • 26. Confidentialisation Removing versus modifying? • Remove direct identifiers • Remove OR modify indirect identifiers Modifying • If removal de-values the dataset • Combine responses into categories • Top and bottom coding • Rounding times, dates, measurements • Cell suppression
  • 28. What is a licence? • A licence sets out how data can be (re)used and attributed • All Australian data intended for reuse should have a licence
  • 29. What is a licence?
  • 30. What is a licence?
  • 31. Why apply a licence?  Use a licence to tell others how they can legally share your work  Promotes re-use and enables collaboration  Gives the owner control and credit
  • 32. AusGOAL licensing framework AusGOAL contains eight licensing options:  Six Australian Creative Commons (CC) Version 4.0 licences  Restrictive Licence Template (RLT)  BSD 3-Clause Software Licence ANDS endorses AusGOAL Wide support by Federal and State Governments http://www.ausgoal.gov.au
  • 33. Licensing and data NOT FOR DATA   Slide is courtesy of Baden Appleyard – Director of AusGOAL
  • 34. How open can I be?  Consent? (For what?)  Potential for harm/discrimination?  Data modified to address identification, limit harm?  HREC approval
  • 35. When CC licence not suitable Restrictive Licences can ‘bespoke’ your conditions of access and use http://www.ausgoal.gov.au/restrictive- licence-template *Check with your DM support, School/Department/Institution to see if one already exists for you to repurpose
  • 36. How do I apply a licence? • You must ‘own’ the data to apply the licence • Look at your institutional IP policies • When partnering: agree – before collecting the data – who can apply the licence and what that licence will be. • Include this info in HREC application
  • 37. How do I apply a licence? • Just apply the marking (image) and/or statement • http://creativecommons.org/about/downloads • http://www.ausgoal.gov.au/sample-copyright- notices • Make it visible on the document, repository record, and/or attached to the data
  • 39. Depositing your data What is a data repository? A research data repository is a managed environment capable of storing and sharing (largely) digital data. The data repository supports the process of curating, preserving, and sharing research data.
  • 40. Choices about publishing 1. Metadata only 2. Metadata plus mediated access 3. Metadata plus open access What is metadata? • Location • Institutional repository • Discipline specific repository • General repository
  • 42. Examples of published medical and health data
  • 43.
  • 44.
  • 45.
  • 46.
  • 47.
  • 48. ANDS Guide to Publishing and Sharing Sensitive Data http://www.ands.org.au/guides/sensitivedata Guide Conditional access Ownership Licensing Repositories How to confidentialise Ethics and consent
  • 49.
  • 50. Take away Plan to publish You have choices Published is not the same as open The library and ANDS can help!
  • 52. 23 (research data) Things JOIN our virtual group: 23 Things Health Data Community Group (4 weekly) Kate LeMay and Julie Toohey (Griffith) co- organisers
  • 53. Senior Research Data Specialist kate.lemay@ands.org.au Kate LeMay With the exception of logos, third party images or where otherwise indicated, this work is licensed under the Creative Commons Australia Attribution 3.0 Licence. ANDS is supported by the Australian Government through the National Collaborative Research Infrastructure Strategy Program. Monash University leads the partnership with the Australian National University and CSIRO.