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Biomolecules

The structures
   Of Life.
Macromolecules
• Monomers= single units
• Polymer= many
  monomers bound
  together
• Monomers, the single
  units, are polymerized
  (joined together) to form
  a polymer
4 Biomolecules in living things
Four groups of organic compounds found in
  living things are:
       • carbohydrates
       • lipids
       • nucleic acids
       • proteins
I. Carbohydrates
 • Carbohydrates
   • organic compound made
     of C, H, & O.
 Carbon, hydrogen, and oxygen are usually
   in the ratio of 1:2:1


                                C6H12O6
Function of Carbohydrates
• Living things use carbohydrates as their main
  source of energy
• Plants and some animals use them as
  structural support
Examples of Carbohydrates
• Sugars
  – Monosaccharides
  – Disaccharides
  – Polysaccharides
3 types of sugars:
• Monosaccharides-
   simple sugars ( 1 sugar       Glucose
     carbohydrate)
      • Glucose & Fructose

• Disaccharides
   – sucrose & Lactose ( 2        Sucrose
     sugars linked together)

• Polysaccharides
   – many simple sugars linked
     together
Fig. 5-2a




 HO           1        2          3   H      HO          H

                  Short polymer             Unlinked monomer

            Dehydration removes a water
            molecule, forming a new bond
                                                  H2O



             HO       1       2       3      4    H

                           Longer polymer
 (a) Dehydration reaction in the synthesis of a polymer
• A disaccharide is formed when a dehydration
  reaction joins two monosaccharides
• This covalent bond is called a glycosidic linkage




                                                          Animation: Disaccharides

Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 5-2b




                  HO         1         2          3    4   H




                      Hydrolysis adds a water
                      molecule, breaking a bond            H2O




    HO            1           2         3         H   HO         H

   (b)      Hydrolysis of a polymer
Fig. 5-3

                     Trioses (C3H6O3)   Pentoses (C5H10O5)       Hexoses (C6H12O6)




           Aldoses




                     Glyceraldehyde


                                             Ribose
                                                             Glucose              Galactose
           Ketoses




                     Dihydroxyacetone


                                            Ribulose
                                                                       Fructose
A monosaccharide is a
•   A. carbohydrate
•   B. lipid
•   C. nucleic acid
•   D. protein
• A. carbohydrate
How many sugars make up a disaccharide?


•   A. one
•   B. two
•   C. three
•   D. many
• B. two
Sugars, starches, and cellulose are all examples
       of which group of biomolecules?
•   A. proteins
•   B. amino acids
•   C. lipids
•   D. carbohydrates
• D. carbohydrates
Storage Polysaccharides
• Starch, a storage polysaccharide of plants,
  consists entirely of glucose monomers
• Plants store surplus starch as granules within
  chloroplasts and other plastids




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 5-6


              Chloroplast   Starch                         Mitochondria Glycogen granules




                                                                                  0.5 µm

                                       1 µm




           Amylose                                                           Glycogen

                                     Amylopectin


  (a) Starch: a plant polysaccharide               (b) Glycogen: an animal polysaccharide
• Glycogen is a storage polysaccharide in animals
• Humans and other vertebrates store glycogen
  mainly in liver and muscle cells




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
• Chitin, another structural polysaccharide, is
  found in the exoskeleton of arthropods
• Chitin also provides structural support for the
  cell walls of many fungi




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 5-10




 (a) The structure   (b) Chitin forms the   (c) Chitin is used to make
     of the chitin      exoskeleton of         a strong and flexible
     monomer.           arthropods.            surgical thread.
Lipids
• Fats, oils, waxes, steroids (examples)
• Are made mostly of carbon, hydrogen, and
  oxygen
• Are not soluble in water (they are nonpolar)
• Hydrogen : oxygen ratio is greater than 2:1
Functions of Lipids
• Used to store energy
• Important part of biological membranes
Fig. 5-14




            Hydrophilic   WATER
            head




            Hydrophobic
                          WATER
            tail
Steroids

• Steroids are lipids characterized by a carbon
  skeleton consisting of four fused rings
• Cholesterol, an important steroid, is a
  component in animal cell membranes
• Although cholesterol is essential in animals, high
  levels in the blood may contribute to
  cardiovascular disease



Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 5-15
• Saturated Lipids : Solid fats, animals




3. Unsaturated Lipids: Oils, plants
Fig. 5-12a




             Structural
             formula of a
             saturated fat
             molecule


             Stearic acid, a
             saturated fatty
             acid
             (a) Saturated fat
Fig. 5-12b




             Structural formula
             of an unsaturated
             fat molecule


             Oleicacid, an
             unsaturated
             fatty acid
                                   cis double
                                   bond causes
                                   bending
             (b) Unsaturated fat
• Hydrogenation is the process of converting
  unsaturated fats to saturated fats by adding
  hydrogen
• Hydrogenating vegetable oils also creates
  unsaturated fats with trans double bonds
• These trans fats may contribute more than
  saturated fats to cardiovascular disease



Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Q. What is the difference between
saturated and unsaturated fatty acids?
Q. What is the difference between
saturated and unsaturated fatty acids?

                                   C10H20O2




                                   C10H18O2




    A. Unsaturated fatty acids have a
    carbon = carbon double bond.
Fig. 5-11a




                             Fatty acid
                           (palmitic acid)


  Glycerol
 (a) Dehydration reaction in the synthesis of a fat
Fig. 5-11b



         Ester linkage




      (b) Fat molecule (triacylglycerol)
• Biomolecules composed mainly of carbon,
   hydrogen, and oxygen in a ratio of 2
   hydrogen for every 1 oxygen would be a
   ___________.
b.Carbohydrate
c. Proteins
d.Amino acids
e.Nucleic acids
• A. carbohydrate
• This atom is a major part of biomolecules, or
  organic molecules.
  A. helium (He)
  B. fluorine (F)
  C. carbon (C)
   D. sodium (Na)
• C. carbon
The structural component of plant cell walls
b.cellulose
c. Starch
d.proteins
e.Glycogen
• C. cellulose
• Which of the following is not a polymer?
b.Starch
c. Glucose
d.Cellulose
e.chitin
• A. cellulose
• On food packages, to what does the term
   "insoluble fiber" refer?
b.Polypeptide
c. Chitin
d.Starch
e.Cellulose
• D. cellulose
• A molecule with the chemical formula C6H12O6
   is probably a
b.Lipid
c. Protein
d.Carbohydrate
e.None of the above
• C. carbohydrate
• Cell membranes are made of
  A. many lipids called phospholipids
  B. long chains of sugar
  C. amino acids and water
• A. many lipids called phospholipids
Which type of fat is healthy?
b.Saturated fats
c. Unsaturated fats
• B . Unsaturated fats
Proteins
• Organic compound made up of:
Carbon
Hydrogen
Oxygen
Nitrogen
3. Proteins are essential to living things:
   Proteins are needed to build & maintain
   cells, digest food, growth, insulin, antibodies
   for immunity, transmit heredity, movement.

4. Examples of Proteins:
     ◊ Hemoglobin – carries O2

     ◊ Actin – muscle contraction

     ◊ Saliva (Enzyme) – breakdown
                   Carbohydrates.
     ◊ Lactase (Enzyme) – digest lactose
                           sugar
Proteins

Polymers of amino acids

 Amino Acids are linked
 together to make
 proteins.
 Amino acids are the
 monomers and proteins
 are the polymers.
Amino acids
• There are 20 different amino acids that are
  incorporated into proteins.
• All amino acids have an Amino Group (NH2), a
  Carboxyl group (COOH), and an R-Group (unique side
  chain that distinguishes that amino acid.
Amino Acid Monomers
• Amino acids differ in their properties due to
  differing side chains, called R groups




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 5-UN1




                     g carbon




             Amino   Carboxyl
             group   group
Fig. 5-17
                                                Nonpolar




               Glycine          Alanine             Valine         Leucine       Isoleucine
              (Gly or G)       (Ala or A)         (Val or V)      (Leu or L)      (Ile or ( )




             Methionine            Phenylalanine             Trypotphan           Proline
             (Met or M)              (Phe or F)               (Trp or W)         (Pro or P)

                                                     Polar




               Serine       Threonine        Cysteine Tyrosine       Asparagine Glutamine
             (Ser or S)     (Thr or T)      (Cys or C) (Tyr or Y)    (Asn or N) (Gln or Q)


                                                 Electrically
                                                  charged
                          Acidic                                      Basic




            Aspartic acid Glutamic acid                Lysine        Arginine    Histidine
             (Asp or D)     (Glu or E)               (Lys or K)     (Arg or R)   (His or H)
• The sequence of amino acids determines a
  protein’s three-dimensional structure
• A protein’s structure determines its function




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Four Levels of Protein Structure
• The primary structure of a protein is its unique
  sequence of amino acids
• Secondary structure, found in most proteins,
  consists of coils and folds in the polypeptide
  chain
• Tertiary structure is determined by interactions
  among various side chains (R groups)
• Quaternary structure results when a protein
  consists of multiple polypeptide chains
                                                       Animation: Protein Structure Introduction

Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 5-21




        Primary                             Secondary     Tertiary   Quaternary
       Structure                            Structure    Structure    Structure

                          S pleated sheet
   H3 N
   +

 Amino end
                   Examples of
                   amino acid
                   subunits




                                               A helix
Fig. 5-21a




                        Primary Structure
                           1

                                             5
                    H3N
                    +


                  Amino end


                                    10


             15                     Amino acid
                                    subunits

                               20



                                                 25
Fig. 5-21d




        Abdominal glands of the
        spider secrete silk fibers
     made of a structural protein
     containing c pleated sheets.
     The radiating strands, made
       of dry silk fibers, maintain
            the shape of the web.

     The spiral strands (capture
 strands) are elastic, stretching
      in response to wind, rain,
       and the touch of insects.
Fig. 5-21f
                                       Hydrophobic
                                       interactions and
                                       van der Waals
                                       interactions

                                          Polypeptide
                                          backbone
             Hydrogen
             bond



                    Disulfide bridge




                  Ionic bond
Sickle-Cell Disease: A Change in
                            Primary Structure
• A slight change in primary structure can affect a
  protein’s structure and ability to function
• Sickle-cell disease, an inherited blood disorder,
  results from a single amino acid substitution in
  the protein hemoglobin




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 5-22c

                      10 µm              10 µm




             Normal red blood    Fibers of abnormal
             cells are full of   hemoglobin deform
             individual          red blood cell into
             hemoglobin          sickle shape.
             molecules, each
             carrying oxygen.
What Determines Protein Structure?
• In addition to primary structure, physical and
  chemical conditions can affect structure
• Alterations in pH, salt concentration,
  temperature, or other environmental factors
  can cause a protein to unravel
• This loss of a protein’s native structure is called
  denaturation
• A denatured protein is biologically inactive


Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
5. All chemical reactions that take place in
    the body are controlled by enzymes and
    all enzymes are proteins.
Which of the following is NOT a
      function of proteins?
• A. store and transmit heredity in the form of a
  chemical code
• B. Help to fight disease (antibodies for
  immunity)
• C. Control the rate of reactions and regulate
  cell processes
• D. Build tissues such as bone and muscle
Answer
• A. store and transmit heredity in the form of a
  chemical code
___ link together to make up
                proteins.
•   A. sugars
•   B. lipids
•   C. amino acids
•   D. nucleic acids
Answer
• C. amino acids
If you were trying to identify a structural
formula as protein, what would you look for?
• A. less than 2:1
• B. greater than 2:1
• C. 2:1
• D. an NH2 & -COOH group, which are known as
  an amino group and a carboxyl group
• D. an NH2 & -COOH group, which are known as
  an amino group and a carboxyl group
D. Nucleic Acids
• Function- transmits and stores genetic
  information
• Composed of C, H, O, N & P (Phosphorous).
Structure of a nucleotide, the
 monomer of a nucleic acid
2 types of Nucleic acids
• 1) Deoxyribonucleic acid
  – Contains the sugar deoxyribose
  – Double stranded
• 2)Ribonucleic acid
  – Contains the sugar ribose
  – Single stranded
Fig. 5-26-1

                               DNA



              1 Synthesis of
                mRNA in the
                nucleus        mRNA




                NUCLEUS
                                      CYTOPLASM
The Structure of Nucleic Acids

• Nucleic acids are polymers called
  polynucleotides
• Each polynucleotide is made of monomers
  called nucleotides
• Each nucleotide consists of a nitrogenous base,
  a pentose sugar, and a phosphate group




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 5-27


        55 end
                                                                                        Nitrogenous bases
                                                                                            Pyrimidines
  55C

 33C

                                                       Nucleoside

                                                        Nitrogenous
                                                            base        Cytosine (C)   Thymine (T, in DNA) Uracil (U, in RNA)


                                                                                             Purines




                                        Phosphate
                                          group        Sugar
  55C                                                (pentose)
                                                                              Adenine (A)               Guanine (G)
 33C                                (b) Nucleotide

                                                                                               Sugars
        33 end
  (a) Polynucleotide, or nucleic acid




                                                                        Deoxyribose (in DNA)              Ribose (in RNA)

                                                                      (c) Nucleoside components: sugars
Fig. 5-27c-1

                                Nitrogenous bases
                                     Pyrimidines




                 Cytosine (C)   Thymine (T, in DNA) Uracil (U, in RNA)


                                      Purines




                       Adenine (A)              Guanine (G)

               (c) Nucleoside components: nitrogenous bases
E. Testing summary for Biomolecules
•   Benedict’s solution = yellow or
    reddish-orange for simple sugars.
•   Iodine solution = black for starch
     (complex carbohydrate)

•   Biuret solution = violet for
    protein.

•   Sudan IV solution = red for lipids

5. Lipids = clear or translucent spot on brown
   paper.
Question
• Which biomolecule is composed of carbon,
   hydrogen, oxygen, nitrogen, and
   phosphorous. It also stores and transmits
   genetic information?
b.Carbohydrates
c. Proteins
d.Lipids
e.Nucleic acids
Answer
• D. nucleic acids
DNA & RNA are two types of ____
•   A. carbohydrates
•   B. nucleic acids
•   C. proteins
•   D. lipids
• B. nucleic acids
All chemical reactions that take place
         in the body are controlled by
•   A. enzymes
•   B. lipids
•   C. sugars
•   D. RNA
Answer
• A. enzymes
Which group of biomolecules do
          enzymes belong to?
a.   Lipids
b.   Carbohydrates
c.   Proteins
d.   Nucleic acids
Answer
• C. proteins
Which biomolecule does deoxyribonucleic acid
belong to?
• A. carbohydrates
• B. lipids
• C. proteins
• D. nucleic acids
• D. nucleic acid
Which monomers contain N?
• A. carbohydrates
• B. lipids
• C. proteins
• D. nucleic acids
• C & D- proteins, nucleic acids
Some of these are inorganic
• A. carbohydrates
• B. lipids
• C. proteins
• D. none
• D. none
Contain carbon, hydrogen and oxygen
• A. carbohydrates
• B. lipids
• C. proteins
• D. nucleic acids
• E. all of the above
• E. all of the above
Contain all the elements C,H, O, N, and P
• A. carbohydrates
• B. nucleic acids
• C. proteins
• D. lipids
• E. none
• B. nucleic acids
Examples are glucose, sucrose, and maltose
• A. carbohydrates
• B. lipids
• C. proteins
• D. nucleic acid
• E. none
• A. carbohydrate
Fats, oils, and waxes
• A. carbohydrates
• B. lipids
• C. proteins
• D. nucleic acids
• E. none
• B. lipids
Monomers made of sugar, N-base, and
phosphate
• A. carbohydrates
• B. lipids
• C. nucleic acid
• D. protein
• E. none
• C. nucleic acid
Enzymes are
• A. carbohydrates
• B. proteins
• C. lipids
• D. nucleic acids
• E. none
• B. proteins
THE
END

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Biomolecules macromolecules

  • 2. Macromolecules • Monomers= single units • Polymer= many monomers bound together • Monomers, the single units, are polymerized (joined together) to form a polymer
  • 3. 4 Biomolecules in living things Four groups of organic compounds found in living things are: • carbohydrates • lipids • nucleic acids • proteins
  • 4. I. Carbohydrates • Carbohydrates • organic compound made of C, H, & O. Carbon, hydrogen, and oxygen are usually in the ratio of 1:2:1 C6H12O6
  • 5. Function of Carbohydrates • Living things use carbohydrates as their main source of energy • Plants and some animals use them as structural support
  • 6. Examples of Carbohydrates • Sugars – Monosaccharides – Disaccharides – Polysaccharides
  • 7. 3 types of sugars: • Monosaccharides- simple sugars ( 1 sugar Glucose carbohydrate) • Glucose & Fructose • Disaccharides – sucrose & Lactose ( 2 Sucrose sugars linked together) • Polysaccharides – many simple sugars linked together
  • 8. Fig. 5-2a HO 1 2 3 H HO H Short polymer Unlinked monomer Dehydration removes a water molecule, forming a new bond H2O HO 1 2 3 4 H Longer polymer (a) Dehydration reaction in the synthesis of a polymer
  • 9. • A disaccharide is formed when a dehydration reaction joins two monosaccharides • This covalent bond is called a glycosidic linkage Animation: Disaccharides Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 10. Fig. 5-2b HO 1 2 3 4 H Hydrolysis adds a water molecule, breaking a bond H2O HO 1 2 3 H HO H (b) Hydrolysis of a polymer
  • 11. Fig. 5-3 Trioses (C3H6O3) Pentoses (C5H10O5) Hexoses (C6H12O6) Aldoses Glyceraldehyde Ribose Glucose Galactose Ketoses Dihydroxyacetone Ribulose Fructose
  • 12. A monosaccharide is a • A. carbohydrate • B. lipid • C. nucleic acid • D. protein
  • 14. How many sugars make up a disaccharide? • A. one • B. two • C. three • D. many
  • 16. Sugars, starches, and cellulose are all examples of which group of biomolecules? • A. proteins • B. amino acids • C. lipids • D. carbohydrates
  • 18. Storage Polysaccharides • Starch, a storage polysaccharide of plants, consists entirely of glucose monomers • Plants store surplus starch as granules within chloroplasts and other plastids Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 19. Fig. 5-6 Chloroplast Starch Mitochondria Glycogen granules 0.5 µm 1 µm Amylose Glycogen Amylopectin (a) Starch: a plant polysaccharide (b) Glycogen: an animal polysaccharide
  • 20. • Glycogen is a storage polysaccharide in animals • Humans and other vertebrates store glycogen mainly in liver and muscle cells Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 21. • Chitin, another structural polysaccharide, is found in the exoskeleton of arthropods • Chitin also provides structural support for the cell walls of many fungi Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 22. Fig. 5-10 (a) The structure (b) Chitin forms the (c) Chitin is used to make of the chitin exoskeleton of a strong and flexible monomer. arthropods. surgical thread.
  • 23. Lipids • Fats, oils, waxes, steroids (examples) • Are made mostly of carbon, hydrogen, and oxygen • Are not soluble in water (they are nonpolar) • Hydrogen : oxygen ratio is greater than 2:1
  • 24. Functions of Lipids • Used to store energy • Important part of biological membranes
  • 25. Fig. 5-14 Hydrophilic WATER head Hydrophobic WATER tail
  • 26. Steroids • Steroids are lipids characterized by a carbon skeleton consisting of four fused rings • Cholesterol, an important steroid, is a component in animal cell membranes • Although cholesterol is essential in animals, high levels in the blood may contribute to cardiovascular disease Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 28. • Saturated Lipids : Solid fats, animals 3. Unsaturated Lipids: Oils, plants
  • 29. Fig. 5-12a Structural formula of a saturated fat molecule Stearic acid, a saturated fatty acid (a) Saturated fat
  • 30. Fig. 5-12b Structural formula of an unsaturated fat molecule Oleicacid, an unsaturated fatty acid cis double bond causes bending (b) Unsaturated fat
  • 31. • Hydrogenation is the process of converting unsaturated fats to saturated fats by adding hydrogen • Hydrogenating vegetable oils also creates unsaturated fats with trans double bonds • These trans fats may contribute more than saturated fats to cardiovascular disease Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 32. Q. What is the difference between saturated and unsaturated fatty acids?
  • 33. Q. What is the difference between saturated and unsaturated fatty acids? C10H20O2 C10H18O2 A. Unsaturated fatty acids have a carbon = carbon double bond.
  • 34. Fig. 5-11a Fatty acid (palmitic acid) Glycerol (a) Dehydration reaction in the synthesis of a fat
  • 35. Fig. 5-11b Ester linkage (b) Fat molecule (triacylglycerol)
  • 36. • Biomolecules composed mainly of carbon, hydrogen, and oxygen in a ratio of 2 hydrogen for every 1 oxygen would be a ___________. b.Carbohydrate c. Proteins d.Amino acids e.Nucleic acids
  • 38. • This atom is a major part of biomolecules, or organic molecules. A. helium (He) B. fluorine (F) C. carbon (C) D. sodium (Na)
  • 40. The structural component of plant cell walls b.cellulose c. Starch d.proteins e.Glycogen
  • 42. • Which of the following is not a polymer? b.Starch c. Glucose d.Cellulose e.chitin
  • 44. • On food packages, to what does the term "insoluble fiber" refer? b.Polypeptide c. Chitin d.Starch e.Cellulose
  • 46. • A molecule with the chemical formula C6H12O6 is probably a b.Lipid c. Protein d.Carbohydrate e.None of the above
  • 48. • Cell membranes are made of A. many lipids called phospholipids B. long chains of sugar C. amino acids and water
  • 49. • A. many lipids called phospholipids
  • 50. Which type of fat is healthy? b.Saturated fats c. Unsaturated fats
  • 51. • B . Unsaturated fats
  • 52. Proteins • Organic compound made up of: Carbon Hydrogen Oxygen Nitrogen
  • 53. 3. Proteins are essential to living things: Proteins are needed to build & maintain cells, digest food, growth, insulin, antibodies for immunity, transmit heredity, movement. 4. Examples of Proteins: ◊ Hemoglobin – carries O2 ◊ Actin – muscle contraction ◊ Saliva (Enzyme) – breakdown Carbohydrates. ◊ Lactase (Enzyme) – digest lactose sugar
  • 54. Proteins Polymers of amino acids Amino Acids are linked together to make proteins. Amino acids are the monomers and proteins are the polymers.
  • 55. Amino acids • There are 20 different amino acids that are incorporated into proteins. • All amino acids have an Amino Group (NH2), a Carboxyl group (COOH), and an R-Group (unique side chain that distinguishes that amino acid.
  • 56. Amino Acid Monomers • Amino acids differ in their properties due to differing side chains, called R groups Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 57. Fig. 5-UN1 g carbon Amino Carboxyl group group
  • 58. Fig. 5-17 Nonpolar Glycine Alanine Valine Leucine Isoleucine (Gly or G) (Ala or A) (Val or V) (Leu or L) (Ile or ( ) Methionine Phenylalanine Trypotphan Proline (Met or M) (Phe or F) (Trp or W) (Pro or P) Polar Serine Threonine Cysteine Tyrosine Asparagine Glutamine (Ser or S) (Thr or T) (Cys or C) (Tyr or Y) (Asn or N) (Gln or Q) Electrically charged Acidic Basic Aspartic acid Glutamic acid Lysine Arginine Histidine (Asp or D) (Glu or E) (Lys or K) (Arg or R) (His or H)
  • 59. • The sequence of amino acids determines a protein’s three-dimensional structure • A protein’s structure determines its function Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 60. Four Levels of Protein Structure • The primary structure of a protein is its unique sequence of amino acids • Secondary structure, found in most proteins, consists of coils and folds in the polypeptide chain • Tertiary structure is determined by interactions among various side chains (R groups) • Quaternary structure results when a protein consists of multiple polypeptide chains Animation: Protein Structure Introduction Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 61. Fig. 5-21 Primary Secondary Tertiary Quaternary Structure Structure Structure Structure S pleated sheet H3 N + Amino end Examples of amino acid subunits A helix
  • 62. Fig. 5-21a Primary Structure 1 5 H3N + Amino end 10 15 Amino acid subunits 20 25
  • 63. Fig. 5-21d Abdominal glands of the spider secrete silk fibers made of a structural protein containing c pleated sheets. The radiating strands, made of dry silk fibers, maintain the shape of the web. The spiral strands (capture strands) are elastic, stretching in response to wind, rain, and the touch of insects.
  • 64. Fig. 5-21f Hydrophobic interactions and van der Waals interactions Polypeptide backbone Hydrogen bond Disulfide bridge Ionic bond
  • 65. Sickle-Cell Disease: A Change in Primary Structure • A slight change in primary structure can affect a protein’s structure and ability to function • Sickle-cell disease, an inherited blood disorder, results from a single amino acid substitution in the protein hemoglobin Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 66. Fig. 5-22c 10 µm 10 µm Normal red blood Fibers of abnormal cells are full of hemoglobin deform individual red blood cell into hemoglobin sickle shape. molecules, each carrying oxygen.
  • 67. What Determines Protein Structure? • In addition to primary structure, physical and chemical conditions can affect structure • Alterations in pH, salt concentration, temperature, or other environmental factors can cause a protein to unravel • This loss of a protein’s native structure is called denaturation • A denatured protein is biologically inactive Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 68. 5. All chemical reactions that take place in the body are controlled by enzymes and all enzymes are proteins.
  • 69. Which of the following is NOT a function of proteins? • A. store and transmit heredity in the form of a chemical code • B. Help to fight disease (antibodies for immunity) • C. Control the rate of reactions and regulate cell processes • D. Build tissues such as bone and muscle
  • 70. Answer • A. store and transmit heredity in the form of a chemical code
  • 71. ___ link together to make up proteins. • A. sugars • B. lipids • C. amino acids • D. nucleic acids
  • 73. If you were trying to identify a structural formula as protein, what would you look for? • A. less than 2:1 • B. greater than 2:1 • C. 2:1 • D. an NH2 & -COOH group, which are known as an amino group and a carboxyl group
  • 74. • D. an NH2 & -COOH group, which are known as an amino group and a carboxyl group
  • 75. D. Nucleic Acids • Function- transmits and stores genetic information • Composed of C, H, O, N & P (Phosphorous).
  • 76. Structure of a nucleotide, the monomer of a nucleic acid
  • 77. 2 types of Nucleic acids • 1) Deoxyribonucleic acid – Contains the sugar deoxyribose – Double stranded • 2)Ribonucleic acid – Contains the sugar ribose – Single stranded
  • 78. Fig. 5-26-1 DNA 1 Synthesis of mRNA in the nucleus mRNA NUCLEUS CYTOPLASM
  • 79.
  • 80. The Structure of Nucleic Acids • Nucleic acids are polymers called polynucleotides • Each polynucleotide is made of monomers called nucleotides • Each nucleotide consists of a nitrogenous base, a pentose sugar, and a phosphate group Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 81. Fig. 5-27 55 end Nitrogenous bases Pyrimidines 55C 33C Nucleoside Nitrogenous base Cytosine (C) Thymine (T, in DNA) Uracil (U, in RNA) Purines Phosphate group Sugar 55C (pentose) Adenine (A) Guanine (G) 33C (b) Nucleotide Sugars 33 end (a) Polynucleotide, or nucleic acid Deoxyribose (in DNA) Ribose (in RNA) (c) Nucleoside components: sugars
  • 82. Fig. 5-27c-1 Nitrogenous bases Pyrimidines Cytosine (C) Thymine (T, in DNA) Uracil (U, in RNA) Purines Adenine (A) Guanine (G) (c) Nucleoside components: nitrogenous bases
  • 83. E. Testing summary for Biomolecules • Benedict’s solution = yellow or reddish-orange for simple sugars. • Iodine solution = black for starch (complex carbohydrate) • Biuret solution = violet for protein. • Sudan IV solution = red for lipids 5. Lipids = clear or translucent spot on brown paper.
  • 84. Question • Which biomolecule is composed of carbon, hydrogen, oxygen, nitrogen, and phosphorous. It also stores and transmits genetic information? b.Carbohydrates c. Proteins d.Lipids e.Nucleic acids
  • 86. DNA & RNA are two types of ____ • A. carbohydrates • B. nucleic acids • C. proteins • D. lipids
  • 87. • B. nucleic acids
  • 88. All chemical reactions that take place in the body are controlled by • A. enzymes • B. lipids • C. sugars • D. RNA
  • 90. Which group of biomolecules do enzymes belong to? a. Lipids b. Carbohydrates c. Proteins d. Nucleic acids
  • 92. Which biomolecule does deoxyribonucleic acid belong to? • A. carbohydrates • B. lipids • C. proteins • D. nucleic acids
  • 94. Which monomers contain N? • A. carbohydrates • B. lipids • C. proteins • D. nucleic acids
  • 95. • C & D- proteins, nucleic acids
  • 96. Some of these are inorganic • A. carbohydrates • B. lipids • C. proteins • D. none
  • 98. Contain carbon, hydrogen and oxygen • A. carbohydrates • B. lipids • C. proteins • D. nucleic acids • E. all of the above
  • 99. • E. all of the above
  • 100. Contain all the elements C,H, O, N, and P • A. carbohydrates • B. nucleic acids • C. proteins • D. lipids • E. none
  • 101. • B. nucleic acids
  • 102. Examples are glucose, sucrose, and maltose • A. carbohydrates • B. lipids • C. proteins • D. nucleic acid • E. none
  • 104. Fats, oils, and waxes • A. carbohydrates • B. lipids • C. proteins • D. nucleic acids • E. none
  • 106. Monomers made of sugar, N-base, and phosphate • A. carbohydrates • B. lipids • C. nucleic acid • D. protein • E. none
  • 107. • C. nucleic acid
  • 108. Enzymes are • A. carbohydrates • B. proteins • C. lipids • D. nucleic acids • E. none

Editor's Notes

  1. Figure 5.2 The synthesis and breakdown of polymers
  2. Figure 5.2 The synthesis and breakdown of polymers
  3. Figure 5.3 The structure and classification of some monosaccharides
  4. Figure 5.6 Storage polysaccharides of plants and animals
  5. Figure 5.10 Chitin, a structural polysaccharide
  6. Figure 5.14 Bilayer structure formed by self-assembly of phospholipids in an aqueous environment
  7. For the Cell Biology Video Space Filling Model of Cholesterol, go to Animation and Video Files. For the Cell Biology Video Stick Model of Cholesterol, go to Animation and Video Files.
  8. Figure 5.15 Cholesterol, a steroid
  9. Figure 5.12 Examples of saturated and unsaturated fats and fatty acids
  10. Figure 5.12 Examples of saturated and unsaturated fats and fatty acids
  11. Figure 5.11 The synthesis and structure of a fat, or triacylglycerol
  12. Figure 5.11 The synthesis and structure of a fat, or triacylglycerol
  13. Figure 5.17 The 20 amino acids of proteins
  14. Figure 5.21 Levels of protein structure — primary structure
  15. Figure 5.21 Levels of protein structure — primary structure
  16. Figure 5.21 Levels of protein structure — secondary structure
  17. Figure 5.21 Levels of protein structure — tertiary and quaternary structures
  18. Figure 5.22 A single amino acid substitution in a protein causes sickle-cell disease
  19. Figure 5.26 DNA → RNA → protein
  20. Figure 5.27 Components of nucleic acids
  21. Figure 5.27 Components of nucleic acids