SlideShare uma empresa Scribd logo
1 de 74
Baixar para ler offline
YAMBASE
Phenotyping Workflow Demo
YamBase
Add Accessions
YamBase
Add Accessions
YamBase
Add Accessions
YamBase
Add Accessions
YamBase
Add Accessions
YamBase
Available Cross types
YamBase
Create a Cross
YamBase
Create a Cross
YamBase
Create a Cross
YamBase
Create a Cross
YamBase
Create list of selected progenies
YamBase
Create list of selected progenies
YamBase
Make a list of traits
YamBase
View lists of accessions and traits
YamBase
Available trial types
YamBase
Create a trial
YamBase
Create a trial
YamBase
Create a trial
YamBase
Create a trial
YamBase
Create a trial
YamBase
Create a field book layout file
YamBase
Fieldbook app tools
YamBase
Fieldbook app info and download
YamBase
Android FieldBook App download
YamBase
Download fieldbook layout file
YamBase
Create fieldbook trait file
YamBase
Download fieldbook trait file
YamBase
Downloaded files
YamBase
Tablet drive
YamBase
Tablet drive: fieldbook directory
YamBase
Copy layout file into field_import
directory
YamBase
Copy trait file into trait directory
YamBase
Fieldbook App
YamBase
Import layout
YamBase
Import layout
YamBase
Import traits
YamBase
Import traits
YamBase
Import traits
YamBase
Import traits
YamBase
Add profile
YamBase
Start phenotyping
YamBase
Export phenotype file
YamBase
Copy export phenotype file
YamBase
Upload exported phenotype
YamBase
Upload exported phenotype
YamBase
View uploaded phenotype
YamBase
Upload field Map
View file format
YamBase
Field map file format
Prepare: 85_layout.txt - Excel Save: 85_layout.txt - Excel
YamBase
Upload field Map
YamBase
View field Map
● Create a biparental cross with 12 progenies
● Create a list of accessions on the cross detail page
● Create a list of traits with the wizard
● Make a trial with the list of accessions
● Create a fieldbook layout file from the trial
● Download fieldbook layout file
● Create a fieldbook trait file from the list of traits
● Download the trait file.
● Transfer layout and trait files to the tablet
● Import layout and trait files into Fieldbook App
● Record some data
● Export the data from the fieldbook and transfer back to the
computer
● Upload the fieldbook phenotypes to YamBasease
● Upload the trial coordinates for the created trial
Exercises
YamBase
YAMBASE
Creating Genotyping Trials
YamBase
Create genotyping trial
YamBase
Create genotyping trial
YamBase
Create genotyping trial
YamBase
Create genotyping trial
YamBase
Create genotyping trial
YamBase
YAMBASE
Uploading Historic Trials
YamBase
Phenotyping workflow
Accessions
To Be Tested
Trial Creation
Fieldbook
Creation
Traits List
Creation
Phenotyping
Import and
Setup Trial in
Fieldbook App.
Transfer files to
Nexus Tablet
&
Export
Phenotype
Upload
Phenotype
YAMBASE.ORG
Historic Phenotype
Upload
YamBase
Trial upload
YamBase
Trial upload
YamBase
Trial upload
YamBase
Trial upload
YamBase
View uploaded trial
YamBase
View uploaded trial
YamBase
Upload phenotype for uploaded trial
YamBase
Upload phenotype for uploaded trial
YamBase
Upload phenotype for uploaded trial
YamBase
Upload phenotype for uploaded trial
YamBase
View uploaded phenotype
YamBase
Used files
FIELD LAYOUT FILE PHENOTYPE FILE
Acknowledgements
Lukas
Mueller
Bryan
Ellerbrock
Naama
Menda
Isaak
Tecle
Nick
Morales
Guillaume
Bauchet
BMGF
THANK YOU.

Mais conteúdo relacionado

Semelhante a YamBase phenotyping workflow demo

Introduction to YamBase
Introduction to YamBaseIntroduction to YamBase
Introduction to YamBasesolgenomics
 
Merrill's Journey to CI-CD and Continuous Testing by Ashish Mukherjee
Merrill's Journey to CI-CD and Continuous Testing by Ashish MukherjeeMerrill's Journey to CI-CD and Continuous Testing by Ashish Mukherjee
Merrill's Journey to CI-CD and Continuous Testing by Ashish MukherjeeSauce Labs
 
Sexy Using Cucumber - BDD in your project
Sexy Using Cucumber - BDD in your projectSexy Using Cucumber - BDD in your project
Sexy Using Cucumber - BDD in your projectb4usolution .
 
(Digital resources) quick and easy genome annotation editing with apollo
(Digital resources) quick and easy genome annotation editing with apollo(Digital resources) quick and easy genome annotation editing with apollo
(Digital resources) quick and easy genome annotation editing with apolloNathan Dunn
 
Qtp Training
Qtp TrainingQtp Training
Qtp Trainingmehramit
 
Rename with Confidence – Building Dynamic FileMaker Systems
Rename with Confidence – Building Dynamic FileMaker SystemsRename with Confidence – Building Dynamic FileMaker Systems
Rename with Confidence – Building Dynamic FileMaker SystemsDB Services
 
Introduction to Play Framework
Introduction to Play FrameworkIntroduction to Play Framework
Introduction to Play FrameworkWarren Zhou
 
TestComplete 7.50 New Features
TestComplete 7.50 New FeaturesTestComplete 7.50 New Features
TestComplete 7.50 New FeaturesVlad Kuznetsov
 
TestComplete 7.50 New Features
TestComplete 7.50 New FeaturesTestComplete 7.50 New Features
TestComplete 7.50 New FeaturesVlad Kuznetsov
 
Best practices for share point solution deployment
Best practices for share point solution deploymentBest practices for share point solution deployment
Best practices for share point solution deploymentSalaudeen Rajack
 
Property Based Testing in PHP
Property Based Testing in PHPProperty Based Testing in PHP
Property Based Testing in PHPvinaikopp
 

Semelhante a YamBase phenotyping workflow demo (12)

Introduction to YamBase
Introduction to YamBaseIntroduction to YamBase
Introduction to YamBase
 
Merrill's Journey to CI-CD and Continuous Testing by Ashish Mukherjee
Merrill's Journey to CI-CD and Continuous Testing by Ashish MukherjeeMerrill's Journey to CI-CD and Continuous Testing by Ashish Mukherjee
Merrill's Journey to CI-CD and Continuous Testing by Ashish Mukherjee
 
Sexy Using Cucumber - BDD in your project
Sexy Using Cucumber - BDD in your projectSexy Using Cucumber - BDD in your project
Sexy Using Cucumber - BDD in your project
 
(Digital resources) quick and easy genome annotation editing with apollo
(Digital resources) quick and easy genome annotation editing with apollo(Digital resources) quick and easy genome annotation editing with apollo
(Digital resources) quick and easy genome annotation editing with apollo
 
Qtp Training
Qtp TrainingQtp Training
Qtp Training
 
Rename with Confidence – Building Dynamic FileMaker Systems
Rename with Confidence – Building Dynamic FileMaker SystemsRename with Confidence – Building Dynamic FileMaker Systems
Rename with Confidence – Building Dynamic FileMaker Systems
 
Introduction to Play Framework
Introduction to Play FrameworkIntroduction to Play Framework
Introduction to Play Framework
 
TestComplete 7.50 New Features
TestComplete 7.50 New FeaturesTestComplete 7.50 New Features
TestComplete 7.50 New Features
 
TestComplete 7.50 New Features
TestComplete 7.50 New FeaturesTestComplete 7.50 New Features
TestComplete 7.50 New Features
 
Best practices for share point solution deployment
Best practices for share point solution deploymentBest practices for share point solution deployment
Best practices for share point solution deployment
 
QTP Online Training
QTP Online TrainingQTP Online Training
QTP Online Training
 
Property Based Testing in PHP
Property Based Testing in PHPProperty Based Testing in PHP
Property Based Testing in PHP
 

Mais de solgenomics

Sl4.0 and ITAG4.0
Sl4.0 and ITAG4.0Sl4.0 and ITAG4.0
Sl4.0 and ITAG4.0solgenomics
 
Cassavabase-PhenoApps demo ISTRC 2018
Cassavabase-PhenoApps demo ISTRC 2018Cassavabase-PhenoApps demo ISTRC 2018
Cassavabase-PhenoApps demo ISTRC 2018solgenomics
 
Cassavabase-PhenoApp sample tracking
Cassavabase-PhenoApp sample trackingCassavabase-PhenoApp sample tracking
Cassavabase-PhenoApp sample trackingsolgenomics
 
breeding informatics solutions at SGN
breeding informatics solutions at SGNbreeding informatics solutions at SGN
breeding informatics solutions at SGNsolgenomics
 
Musabase PAG 2018
Musabase PAG 2018Musabase PAG 2018
Musabase PAG 2018solgenomics
 
Cassavabase workshop ibadan March17
Cassavabase workshop ibadan March17Cassavabase workshop ibadan March17
Cassavabase workshop ibadan March17solgenomics
 
Improvements in the Tomato Reference Genome (SL3.0) and Annotation (ITAG3.0)
Improvements in the Tomato Reference Genome (SL3.0) and Annotation (ITAG3.0)Improvements in the Tomato Reference Genome (SL3.0) and Annotation (ITAG3.0)
Improvements in the Tomato Reference Genome (SL3.0) and Annotation (ITAG3.0)solgenomics
 
SolGS Hyderabad conference 2016
SolGS Hyderabad conference 2016SolGS Hyderabad conference 2016
SolGS Hyderabad conference 2016solgenomics
 
Musa base phenotyping workflow demo
Musa base phenotyping workflow demoMusa base phenotyping workflow demo
Musa base phenotyping workflow demosolgenomics
 
SolGS workshop 2016
SolGS workshop 2016SolGS workshop 2016
SolGS workshop 2016solgenomics
 
Introduction to SQL
Introduction to SQLIntroduction to SQL
Introduction to SQLsolgenomics
 
Cassavabase SolGS presentation PAG 2016
Cassavabase SolGS presentation PAG 2016Cassavabase SolGS presentation PAG 2016
Cassavabase SolGS presentation PAG 2016solgenomics
 
Cassavabase SolGS poster PAG 2016
Cassavabase SolGS poster PAG 2016Cassavabase SolGS poster PAG 2016
Cassavabase SolGS poster PAG 2016solgenomics
 
1 introduction to cassavabase
1  introduction to cassavabase 1  introduction to cassavabase
1 introduction to cassavabase solgenomics
 
2 Cassavabase workshop: search menu
2  Cassavabase workshop: search menu2  Cassavabase workshop: search menu
2 Cassavabase workshop: search menusolgenomics
 
3c Cassavabase workshop: manage-crosses
3c  Cassavabase workshop: manage-crosses3c  Cassavabase workshop: manage-crosses
3c Cassavabase workshop: manage-crossessolgenomics
 
3d Cassavabase workshop: manage field-trial
3d  Cassavabase workshop: manage field-trial3d  Cassavabase workshop: manage field-trial
3d Cassavabase workshop: manage field-trialsolgenomics
 
3e Cassavabase workshop: manage genotyping-trials
3e  Cassavabase workshop: manage genotyping-trials3e  Cassavabase workshop: manage genotyping-trials
3e Cassavabase workshop: manage genotyping-trialssolgenomics
 
3f Cassavabase workshop: manage field-book
3f  Cassavabase workshop: manage field-book3f  Cassavabase workshop: manage field-book
3f Cassavabase workshop: manage field-booksolgenomics
 

Mais de solgenomics (20)

Sl4.0 and ITAG4.0
Sl4.0 and ITAG4.0Sl4.0 and ITAG4.0
Sl4.0 and ITAG4.0
 
Cassavabase-PhenoApps demo ISTRC 2018
Cassavabase-PhenoApps demo ISTRC 2018Cassavabase-PhenoApps demo ISTRC 2018
Cassavabase-PhenoApps demo ISTRC 2018
 
Cassavabase-PhenoApp sample tracking
Cassavabase-PhenoApp sample trackingCassavabase-PhenoApp sample tracking
Cassavabase-PhenoApp sample tracking
 
breeding informatics solutions at SGN
breeding informatics solutions at SGNbreeding informatics solutions at SGN
breeding informatics solutions at SGN
 
Musabase PAG 2018
Musabase PAG 2018Musabase PAG 2018
Musabase PAG 2018
 
Cassavabase workshop ibadan March17
Cassavabase workshop ibadan March17Cassavabase workshop ibadan March17
Cassavabase workshop ibadan March17
 
Improvements in the Tomato Reference Genome (SL3.0) and Annotation (ITAG3.0)
Improvements in the Tomato Reference Genome (SL3.0) and Annotation (ITAG3.0)Improvements in the Tomato Reference Genome (SL3.0) and Annotation (ITAG3.0)
Improvements in the Tomato Reference Genome (SL3.0) and Annotation (ITAG3.0)
 
SolGS Hyderabad conference 2016
SolGS Hyderabad conference 2016SolGS Hyderabad conference 2016
SolGS Hyderabad conference 2016
 
Musa base phenotyping workflow demo
Musa base phenotyping workflow demoMusa base phenotyping workflow demo
Musa base phenotyping workflow demo
 
SolGS workshop 2016
SolGS workshop 2016SolGS workshop 2016
SolGS workshop 2016
 
Sql cheat sheet
Sql cheat sheetSql cheat sheet
Sql cheat sheet
 
Introduction to SQL
Introduction to SQLIntroduction to SQL
Introduction to SQL
 
Cassavabase SolGS presentation PAG 2016
Cassavabase SolGS presentation PAG 2016Cassavabase SolGS presentation PAG 2016
Cassavabase SolGS presentation PAG 2016
 
Cassavabase SolGS poster PAG 2016
Cassavabase SolGS poster PAG 2016Cassavabase SolGS poster PAG 2016
Cassavabase SolGS poster PAG 2016
 
1 introduction to cassavabase
1  introduction to cassavabase 1  introduction to cassavabase
1 introduction to cassavabase
 
2 Cassavabase workshop: search menu
2  Cassavabase workshop: search menu2  Cassavabase workshop: search menu
2 Cassavabase workshop: search menu
 
3c Cassavabase workshop: manage-crosses
3c  Cassavabase workshop: manage-crosses3c  Cassavabase workshop: manage-crosses
3c Cassavabase workshop: manage-crosses
 
3d Cassavabase workshop: manage field-trial
3d  Cassavabase workshop: manage field-trial3d  Cassavabase workshop: manage field-trial
3d Cassavabase workshop: manage field-trial
 
3e Cassavabase workshop: manage genotyping-trials
3e  Cassavabase workshop: manage genotyping-trials3e  Cassavabase workshop: manage genotyping-trials
3e Cassavabase workshop: manage genotyping-trials
 
3f Cassavabase workshop: manage field-book
3f  Cassavabase workshop: manage field-book3f  Cassavabase workshop: manage field-book
3f Cassavabase workshop: manage field-book
 

Último

Making AI Behave: Using Knowledge Domains to Produce Useful, Trustworthy Results
Making AI Behave: Using Knowledge Domains to Produce Useful, Trustworthy ResultsMaking AI Behave: Using Knowledge Domains to Produce Useful, Trustworthy Results
Making AI Behave: Using Knowledge Domains to Produce Useful, Trustworthy ResultsAccess Innovations, Inc.
 
IPO OFFERINGS by mint hindustantimes.pdf
IPO OFFERINGS by mint hindustantimes.pdfIPO OFFERINGS by mint hindustantimes.pdf
IPO OFFERINGS by mint hindustantimes.pdfratnasehgal888
 
Communication Accommodation Theory Kaylyn Benton.pptx
Communication Accommodation Theory Kaylyn Benton.pptxCommunication Accommodation Theory Kaylyn Benton.pptx
Communication Accommodation Theory Kaylyn Benton.pptxkb31670
 
Communication Accommodation Theory Kaylyn Benton.pptx
Communication Accommodation Theory Kaylyn Benton.pptxCommunication Accommodation Theory Kaylyn Benton.pptx
Communication Accommodation Theory Kaylyn Benton.pptxkb31670
 
Machine learning workshop, CZU Prague 2024
Machine learning workshop, CZU Prague 2024Machine learning workshop, CZU Prague 2024
Machine learning workshop, CZU Prague 2024Gokulks007
 
Burning Issue presentation of Zhazgul N. , Cycle 54
Burning Issue presentation of Zhazgul N. , Cycle 54Burning Issue presentation of Zhazgul N. , Cycle 54
Burning Issue presentation of Zhazgul N. , Cycle 54ZhazgulNurdinova
 
ISO 25964-1Working Group ISO/TC 46/SC 9/WG 8
ISO 25964-1Working Group ISO/TC 46/SC 9/WG 8ISO 25964-1Working Group ISO/TC 46/SC 9/WG 8
ISO 25964-1Working Group ISO/TC 46/SC 9/WG 8Access Innovations, Inc.
 
Juan Pablo Sugiura - eCommerce Day Bolivia 2024
Juan Pablo Sugiura - eCommerce Day Bolivia 2024Juan Pablo Sugiura - eCommerce Day Bolivia 2024
Juan Pablo Sugiura - eCommerce Day Bolivia 2024eCommerce Institute
 
The Real Story Of Project Manager/Scrum Master From Where It Came?!
The Real Story Of Project Manager/Scrum Master From Where It Came?!The Real Story Of Project Manager/Scrum Master From Where It Came?!
The Real Story Of Project Manager/Scrum Master From Where It Came?!Loay Mohamed Ibrahim Aly
 
Circle Of Life Civics Presentation Burning Issue
Circle Of Life Civics Presentation Burning IssueCircle Of Life Civics Presentation Burning Issue
Circle Of Life Civics Presentation Burning Issuebdavis22
 

Último (10)

Making AI Behave: Using Knowledge Domains to Produce Useful, Trustworthy Results
Making AI Behave: Using Knowledge Domains to Produce Useful, Trustworthy ResultsMaking AI Behave: Using Knowledge Domains to Produce Useful, Trustworthy Results
Making AI Behave: Using Knowledge Domains to Produce Useful, Trustworthy Results
 
IPO OFFERINGS by mint hindustantimes.pdf
IPO OFFERINGS by mint hindustantimes.pdfIPO OFFERINGS by mint hindustantimes.pdf
IPO OFFERINGS by mint hindustantimes.pdf
 
Communication Accommodation Theory Kaylyn Benton.pptx
Communication Accommodation Theory Kaylyn Benton.pptxCommunication Accommodation Theory Kaylyn Benton.pptx
Communication Accommodation Theory Kaylyn Benton.pptx
 
Communication Accommodation Theory Kaylyn Benton.pptx
Communication Accommodation Theory Kaylyn Benton.pptxCommunication Accommodation Theory Kaylyn Benton.pptx
Communication Accommodation Theory Kaylyn Benton.pptx
 
Machine learning workshop, CZU Prague 2024
Machine learning workshop, CZU Prague 2024Machine learning workshop, CZU Prague 2024
Machine learning workshop, CZU Prague 2024
 
Burning Issue presentation of Zhazgul N. , Cycle 54
Burning Issue presentation of Zhazgul N. , Cycle 54Burning Issue presentation of Zhazgul N. , Cycle 54
Burning Issue presentation of Zhazgul N. , Cycle 54
 
ISO 25964-1Working Group ISO/TC 46/SC 9/WG 8
ISO 25964-1Working Group ISO/TC 46/SC 9/WG 8ISO 25964-1Working Group ISO/TC 46/SC 9/WG 8
ISO 25964-1Working Group ISO/TC 46/SC 9/WG 8
 
Juan Pablo Sugiura - eCommerce Day Bolivia 2024
Juan Pablo Sugiura - eCommerce Day Bolivia 2024Juan Pablo Sugiura - eCommerce Day Bolivia 2024
Juan Pablo Sugiura - eCommerce Day Bolivia 2024
 
The Real Story Of Project Manager/Scrum Master From Where It Came?!
The Real Story Of Project Manager/Scrum Master From Where It Came?!The Real Story Of Project Manager/Scrum Master From Where It Came?!
The Real Story Of Project Manager/Scrum Master From Where It Came?!
 
Circle Of Life Civics Presentation Burning Issue
Circle Of Life Civics Presentation Burning IssueCircle Of Life Civics Presentation Burning Issue
Circle Of Life Civics Presentation Burning Issue
 

YamBase phenotyping workflow demo