Mais conteúdo relacionado Semelhante a bioinfolec_20070706 4th (20) 6. •
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<QUERY> <HTML>
<VALUE len=5>HELLO</VALUE> <BODY>Hello World!</BODY>
</QUERY> </HTML> 10. • element( )
• element( )
• attribute( ) 1
• element attribute
• element, attribute ) DTD
<shop>
shop
<item name=”Apple”>
<price>150</price>
<piece>1</piece>
</item> item
item
<item name=”Orange” />
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name=”Orange”
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$ curl ”http://example.org/start.html”
http://example.org/start.html
$ curl -o index.html ”http://example.org/start.html”
http://example.org/start.html index.html
-o
$ curl -O ”http://example.org/start.html”
http://example.org/start.html start.html
(-O ( ) URL 15. $ curl -o search_ptk2.xml ”http://eutils.ncbi.nlm.nih.gov/entrez/
eutils/esearch.fcgi?db=gene&term=ptk2quot;
search_ptk2.xml
<?xml version=quot;1.0quot;?>
<!DOCTYPE eSearchResult PUBLIC quot;-//NLM//DTD eSearchResult, 11 May
2002//ENquot; quot;http://www.ncbi.nlm.nih.gov/entrez/query/DTD/
eSearch_020511.dtdquot;>
<eSearchResult>
<Count>316</Count>
<RetMax>20</RetMax>
<RetStart>0</RetStart>
<IdList>
<Id>14083</Id>
<Id>5747</Id>
()
<Id>515604</Id>
</IdList>
<TranslationSet>
</TranslationSet>
<TranslationStack>
<TermSet>
<Term>ptk2[All Fields]</Term>
<Field>All Fields</Field>
<Count>316</Count>
<Explode>Y</Explode>
</TermSet> 16. $ curl -o gene_14083.xml ”http://eutils.ncbi.nlm.nih.gov/entrez/eutils/
esummary.fcgi?db=gene&id=14083&retmode=xmlquot;
gene_14083.xml
<?xml version=quot;1.0quot;?>
<!DOCTYPE eSummaryResult PUBLIC quot;-//NLM//DTD eSummaryResult, 29 October
2004//ENquot; quot;http://www.ncbi.nlm.nih.gov/entrez/query/DTD/
eSummary_041029.dtdquot;>
<eSummaryResult>
<DocSum>
<Id>14083</Id>
<Item Name=quot;Namequot; Type=quot;Stringquot;>Ptk2</Item>
<Item Name=quot;Descriptionquot; Type=quot;Stringquot;>PTK2 protein tyrosine
kinase 2</Item>
<Item Name=quot;Orgnamequot; Type=quot;Stringquot;>Mus musculus</Item>
<Item Name=quot;Statusquot; Type=quot;Integerquot;>0</Item>
<Item Name=quot;CurrentIDquot; Type=quot;Integerquot;>0</Item>
<Item Name=quot;Chromosomequot; Type=quot;Stringquot;>15</Item>
<Item Name=quot;GeneticSourcequot; Type=quot;Stringquot;>genomic</Item>
<Item Name=quot;MapLocationquot; Type=quot;Stringquot;>15 42.0 cM</Item>
<Item Name=quot;OtherAliasesquot; Type=quot;Stringquot;>FAK, FRNK, Fadk,
KIAA4203, mKIAA4203</Item>
<Item Name=quot;OtherDesignationsquot; Type=quot;Stringquot;>focal adhesion
kinase</Item>
<Item Name=quot;NomenclatureSymbolquot; Type=quot;Stringquot;>Ptk2</Item>
<Item Name=quot;NomenclatureNamequot; Type=quot;Stringquot;>PTK2 protein
tyrosine kinase 2</Item> 17. <Item Name=quot;NomenclatureStatusquot; Type=quot;Stringquot;>Official</Item>
<Item Name=quot;TaxIDquot; Type=quot;Integerquot;>10090</Item>
<Item Name=quot;Mimquot; Type=quot;Listquot;></Item>
<Item Name=quot;GenomicInfoquot; Type=quot;Listquot;>
<Item Name=quot;GenomicInfoTypequot; Type=quot;Structurequot;>
<Item Name=quot;ChrLocquot; Type=quot;Stringquot;>1</Item>
<Item Name=quot;ChrAccVerquot;
Type=quot;Stringquot;>NC_000081.5</Item>
<Item Name=quot;ChrStartquot; Type=quot;Integerquot;>73225153</
Item>
<Item Name=quot;ChrStopquot; Type=quot;Integerquot;>73035535</
Item>
</Item>
</Item>
</DocSum>
</eSummaryResult> 18. $ curl ”http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?
db=gene&id=14083,5747&retmode=xmlquot;
<?xml version=quot;1.0quot;?>
<!DOCTYPE eSummaryResult PUBLIC quot;-//NLM//DTD eSummaryResult, 29 October
2004//EN
quot; quot;http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtdquot;>
<eSummaryResult>
<DocSum>
<Id>14083</Id>
<Item Name=quot;Namequot; Type=quot;Stringquot;>Ptk2</Item>
<Item Name=quot;Descriptionquot; Type=quot;Stringquot;>PTK2 protein tyrosine
kinase 2</Item>
<Item Name=quot;Orgnamequot; Type=quot;Stringquot;>Mus musculus</Item>
()
</DocSum>
<DocSum>
<Id>5747</Id>
<Item Name=quot;Namequot; Type=quot;Stringquot;>PTK2</Item>
<Item Name=quot;Descriptionquot; Type=quot;Stringquot;>PTK2 protein tyrosine
kinase 2</Item>
<Item Name=quot;Orgnamequot; Type=quot;Stringquot;>Homo sapiens</Item>
()
</DocSum>
</eSummaryResult> 19. •
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http://www.ncbi.nlm.nih.gov/entrez/query/static/eutils_help.html#PrimaryIDs
Entrez Database
Primary ID
E-Utility Database Name
3D Domains
3D SDI
domains
Domains PSSM-ID
cdd
Genome
Genome ID
genome
EntrezGene Gene ID
gene
Nucleotide GI number
nucleotide
OMIM
MIM number
omim
PopSet
Popset ID
popset
Protein
GI number
protein
ProbeSet
GEO ID
geo
PubMed
PMID
pubmed
Structure
MMDB ID
structure
SNP
SNP ID
snp
Taxonomy
TAXID
taxonomy
UniSTS
UniSTS ID
unists 20. NC_000081.5
73035535 73225153 73226153
$ curl ”http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?
db=genome&id=NC_000081.5&seq_start=73226153&seq_stop=73225154&strand=2&
rettype=fastaquot;
>ref|NC_000081.5|NC_000081:c73226153-73225154 Mus musculus chromosome
15, reference assembly (C57BL/6J)
TCACATCCTTGTGATGAACTCAGGACTTCTTAGGGAAGCTTTAAGTATATATGCTTTGCATCAGGATATT
TTGTATGGCCTTTTGTCAGGGAGTTCTGTGTTGGTGTCTTTAGTTTTACCTGTTAGGCTAACAGTTTCCT
GCAGGGAAAAGATATGATGCCAGATTCTGGTACTTGATTGCCTTGTGTTGTGGGAGCTGGAGTTGTTGAC
TTACCATTCCTCTGTGTGAAAGCTACTCAGCTTTTTCCAGAGACTGGCTCTTGGTCTGCTCTCAGGTGGG
TAGAGGGGACCAGATGGAGGCAGGCTACTAGGGCTGGCACTGTAACACTCTGTCACCTCACTCAGTGCCG
CTGCTTCTGAGACTTTTTTTACTCTGCCATGAAAATGGAATTGGTACTTCAACTTTTCAGTTCCTGGCCT
AAAGTCTGCTAAATCATTGGCTGTGCTTCCTTCCCATTTTAAATTTGTCTCTCTTCTGTCCAGAATATTG
TCCCTCCTTCAGTATATCTATTTGTTTTGATGTTTATCTTAGCCTTTTCAGTTCCCCAGTTCCCACTCCT 23. $ curl -o search_ptk2.xml ”http://eutils.ncbi.nlm.nih.gov/entrez/
eutils/esearch.fcgi?db=gene&term=ptk2quot; 24. $ curl -o gene_14083.xml ”http://eutils.ncbi.nlm.nih.gov/entrez/eutils/
esummary.fcgi?db=gene&id=14083&retmode=xmlquot;
