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RAMS: the Register of Antarctic Marine Species
Bruno Danis, ULB
biodiversity.aq?
• Born as Census of Antarctic Marine Life
as the data, visualization and analysis
component
• Free and open access to biodiversity
data: taxonomy and biogeography
• SCAR-MarBIN => ANTABIF =>
biodiversity.aq projects
• Science, conservation and management
• Networked community developments
David B, Danis B, Griffiths HJ
• Build an electronic ecosystem

• Offer free and open access to data and technology

• Expose all the (biodiversity) data and metadata, in multiple contexts

• Remain community-driven, and collaborative

• Adopt strong standardization

• Work for science, conservation, management
General philosophy
The first dynamic Register of Antarctic Marine Species
Taxonomic backbone for many projects
Board of 60 editors
Citations for "Register of Antarctic Marine Species": 325
Cited publications: 20
H-Index: 9
RAMS: a subset of WoRMS
18,343 taxa 95% checked
Taxonomy:
18,343 accepted marine species; of which 17,398 checked
(95%)
Usage (since 2005-10-26):
	Total number of visitors: 1.269.812
	Total hits: 10.454.194
	Benefits from being a subset of WoRMS
!
RAMS
• www.biodiversity.aq
• data.biodiversity.aq
• ipt.biodiversity.aq
• afg.biodiversity.aq
• atlas.biodiversity.aq
• mars.biodiversity.aq
biodiversity.aq Architecture
Nodes)Investment)in)new)func@onality)
•  Nodes)extend)the)plaGorm)with)new)modules)
A)module)I)need)
A)module)we)all)need)
Data discovery
Promote)the)communit
development)of)N
•  GBIF)promotes)training)and)us
ANTABIF
MODULAR ARCHITECTURE
Nodes)Investment)in)new)func@ona
•  Nodes)extend)the)plaGorm)with)new)mod
A)module)I)need)
A)module)we)all)need)
Data visualization
NPT)can)be)extended)by)crea@ng)an
installing)Modules)
Data products
afg.biodiversity.aq
• Biogeographic Atlas of the Southern Ocean
• Redo of Hedgepeth 1969 Folio
• Predictive approach
• Static and dynamic versions
• Modelization loops are ready
atlas.biodiversity.aq
94 Interpolated data layers
Slope
Bathymetry
Chlorophyll
Distance to the continent
Distance to bird colonies
Distance to ice
Distance to shelf
Distance to canyon
Floor temperature
...
+
ANTABIF Occurrence
records
• Integrate Antarctic microbial DNA sequence data in biodiversity.aq
• Phased approach:
Step 0: data description and discovery
Step 1: microbial sequence and habitat metadata
Step 2: sequence data
Step 3: batch sequence data processing
Step 4: customized sequence data processing
mars.biodiversity.aq
@biodiversityaq
image	
  ©	
  NY	
  Times	
  
Thanks and questions?
@marinebiologybe

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Register of Antarctic Marine Species - AquaRES

  • 1. RAMS: the Register of Antarctic Marine Species Bruno Danis, ULB
  • 2. biodiversity.aq? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF => biodiversity.aq projects • Science, conservation and management • Networked community developments David B, Danis B, Griffiths HJ
  • 3. • Build an electronic ecosystem • Offer free and open access to data and technology • Expose all the (biodiversity) data and metadata, in multiple contexts • Remain community-driven, and collaborative • Adopt strong standardization • Work for science, conservation, management General philosophy
  • 4. The first dynamic Register of Antarctic Marine Species Taxonomic backbone for many projects Board of 60 editors Citations for "Register of Antarctic Marine Species": 325 Cited publications: 20 H-Index: 9 RAMS: a subset of WoRMS 18,343 taxa 95% checked
  • 5. Taxonomy: 18,343 accepted marine species; of which 17,398 checked (95%) Usage (since 2005-10-26): Total number of visitors: 1.269.812 Total hits: 10.454.194 Benefits from being a subset of WoRMS ! RAMS
  • 6. • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq biodiversity.aq Architecture Nodes)Investment)in)new)func@onality) •  Nodes)extend)the)plaGorm)with)new)modules) A)module)I)need) A)module)we)all)need) Data discovery Promote)the)communit development)of)N •  GBIF)promotes)training)and)us ANTABIF MODULAR ARCHITECTURE Nodes)Investment)in)new)func@ona •  Nodes)extend)the)plaGorm)with)new)mod A)module)I)need) A)module)we)all)need) Data visualization NPT)can)be)extended)by)crea@ng)an installing)Modules) Data products
  • 8. • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions • Modelization loops are ready atlas.biodiversity.aq
  • 9. 94 Interpolated data layers Slope Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence records
  • 10.
  • 11. • Integrate Antarctic microbial DNA sequence data in biodiversity.aq • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data Step 3: batch sequence data processing Step 4: customized sequence data processing mars.biodiversity.aq
  • 12. @biodiversityaq image  ©  NY  Times   Thanks and questions? @marinebiologybe