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ANTABIF:      Bruno Danis - MARS workshop
                     Architecture and Functionalities
Thursday 10 May 12
Antarctic Treaty
                     « In order to promote international
                     cooperation in scientific investigation in
                     Antarctica, […],

                     Scientific observations and results from
                     Antarctica shall be exchanged and made
                     freely available. »


Thursday 10 May 12
Slide stolen from Mark Parsons




      Our	
  vision:
      [ANTARCTIC	
  BIODIVERSITY]	
  Data	
  are	
  
      open,	
  linked,	
  useful,	
  interoperable	
  and	
  safe.




                                                          Copyright: © Christian Morel
Thursday 10 May 12
Antarctic Information Networks - scope




          Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO   David B, Danis B, Griffiths HJ
Thursday 10 May 12
Antarctic Information Networks - scope

      • Born as Census of Antarctic Marine Life
        as the data, visualization and analysis
        component




          Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO   David B, Danis B, Griffiths HJ
Thursday 10 May 12
Antarctic Information Networks - scope

      • Born as Census of Antarctic Marine Life
        as the data, visualization and analysis
        component

      • Free and open access to biodiversity data




          Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO   David B, Danis B, Griffiths HJ
Thursday 10 May 12
Antarctic Information Networks - scope

      • Born as Census of Antarctic Marine Life
        as the data, visualization and analysis
        component

      • Free and open access to biodiversity data

      • SCAR-MarBIN and ANTABIF projects




          Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO   David B, Danis B, Griffiths HJ
Thursday 10 May 12
Antarctic Information Networks - scope

      • Born as Census of Antarctic Marine Life
        as the data, visualization and analysis
        component

      • Free and open access to biodiversity data

      • SCAR-MarBIN and ANTABIF projects

      • Science, conservation and management




          Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO   David B, Danis B, Griffiths HJ
Thursday 10 May 12
Antarctic Information Networks - scope

      • Born as Census of Antarctic Marine Life
        as the data, visualization and analysis
        component

      • Free and open access to biodiversity data

      • SCAR-MarBIN and ANTABIF projects

      • Science, conservation and management

      • Networked community developments




          Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO   David B, Danis B, Griffiths HJ
Thursday 10 May 12
Antarctic Information Networks - scope

      • Born as Census of Antarctic Marine Life
        as the data, visualization and analysis
        component

      • Free and open access to biodiversity data

      • SCAR-MarBIN and ANTABIF projects

      • Science, conservation and management

      • Networked community developments

      • SCAR-MarBIN: Citations : 423,
        Publications: 58, H-Index: 11


          Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO   David B, Danis B, Griffiths HJ
Thursday 10 May 12
Antarctic Information Networks - scope

      • Born as Census of Antarctic Marine Life
        as the data, visualization and analysis
        component

      • Free and open access to biodiversity data

      • SCAR-MarBIN and ANTABIF projects

      • Science, conservation and management

      • Networked community developments

      • SCAR-MarBIN: Citations : 423,
        Publications: 58, H-Index: 11


          Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO   David B, Danis B, Griffiths HJ
Thursday 10 May 12
Collaboration cloud - who’s in?




Thursday 10 May 12
Collaboration cloud - who’s in?




Thursday 10 May 12
Taxonomy
                                          17,098 taxa




     The first dynamic Register of Antarctic Marine Species

     Taxonomic backbone

     Board of 64 editors

     Feeds World Register of Marine Species, Catalogue of Life and
     Encyclopedia of Life
                                                        De Broyer et al, Register of Antarctic Marine Species 2012
     Virtually nothing on Bacteria!!
Thursday 10 May 12
Taxonomy
                                          17,098 taxa




     The first dynamic Register of Antarctic Marine Species

     Taxonomic backbone

     Board of 64 editors

     Feeds World Register of Marine Species, Catalogue of Life and
     Encyclopedia of Life
                                                        De Broyer et al, Register of Antarctic Marine Species 2012
     Virtually nothing on Bacteria!!
Thursday 10 May 12
Biogeography

      • Single access to 900 datasets

      • 2.5 million records

      • Data back to 1900 (Pygoscelis
        adeliae)

      • Spatial data on over 5000 taxa

      • Downloadable

      • Interoperable

      • Free and open
                                          Danis et al, Antarctic Biodiversity Information Facility 2012
      • Virtually nothing on Bacteria!!
Thursday 10 May 12
Biogeography

      • Single access to 900 datasets

      • 2.5 million records

      • Data back to 1900 (Pygoscelis
        adeliae)

      • Spatial data on over 5000 taxa

      • Downloadable

      • Interoperable

      • Free and open
                                          Danis et al, Antarctic Biodiversity Information Facility 2012
      • Virtually nothing on Bacteria!!
Thursday 10 May 12
Antarctic Information Networks - applications




                                     Danis et al, The SCAR Antarctic Field Guides 2012


Thursday 10 May 12
Antarctic Information Networks - applications

      • Data-driven Marine Protected Area designation




                                         Danis et al, The SCAR Antarctic Field Guides 2012


Thursday 10 May 12
Antarctic Information Networks - applications

      • Data-driven Marine Protected Area designation

      • Expedition design




                                         Danis et al, The SCAR Antarctic Field Guides 2012


Thursday 10 May 12
Antarctic Information Networks - applications

      • Data-driven Marine Protected Area designation

      • Expedition design

      • Biogeographic patterns




                                         Danis et al, The SCAR Antarctic Field Guides 2012


Thursday 10 May 12
Antarctic Information Networks - applications

      • Data-driven Marine Protected Area designation

      • Expedition design

      • Biogeographic patterns

      • Antarctic Field Guides




                                         Danis et al, The SCAR Antarctic Field Guides 2012


Thursday 10 May 12
Antarctic Information Networks - applications

      • Data-driven Marine Protected Area designation

      • Expedition design

      • Biogeographic patterns

      • Antarctic Field Guides

      • Biogeographic Atlas


                                         Danis et al, The SCAR Antarctic Field Guides 2012


Thursday 10 May 12
Antarctic Information Networks - applications

      • Data-driven Marine Protected Area designation

      • Expedition design

      • Biogeographic patterns

      • Antarctic Field Guides

      • Biogeographic Atlas

      • Gap analysis
                                         Danis et al, The SCAR Antarctic Field Guides 2012


Thursday 10 May 12
Functionalities




Thursday 10 May 12
biodiversity.aq




Thursday 10 May 12
biodiversity.aq
                     • www.biodiversity.aq




Thursday 10 May 12
biodiversity.aq
                     • www.biodiversity.aq
                     • data.biodiversity.aq




Thursday 10 May 12
biodiversity.aq
                     • www.biodiversity.aq
                     • data.biodiversity.aq
                     • ipt.biodiversity.aq




Thursday 10 May 12
biodiversity.aq
                     • www.biodiversity.aq
                     • data.biodiversity.aq
                     • ipt.biodiversity.aq
                     • afg.biodiversity.aq




Thursday 10 May 12
biodiversity.aq
                     • www.biodiversity.aq
                     • data.biodiversity.aq
                     • ipt.biodiversity.aq
                     • afg.biodiversity.aq
                     • atlas.biodiversity.aq




Thursday 10 May 12
biodiversity.aq
                     • www.biodiversity.aq
                     • data.biodiversity.aq
                     • ipt.biodiversity.aq
                     • afg.biodiversity.aq
                     • atlas.biodiversity.aq
                     • share.biodiversity.aq



Thursday 10 May 12
biodiversity.aq
                     • www.biodiversity.aq
                     • data.biodiversity.aq
                     • ipt.biodiversity.aq
                     • afg.biodiversity.aq
                     • atlas.biodiversity.aq
                     • share.biodiversity.aq
                     • mars.biodiversity.aq ?

Thursday 10 May 12
www. biodiversity.aq

         • general website
         • latest news
         • contact
         • sponsors
         • governance
         • ressources
Thursday 10 May 12
www. biodiversity.aq
                           -Resources-




Thursday 10 May 12
www. biodiversity.aq
                          -shared repository-




Thursday 10 May 12
www. biodiversity.aq
                            -Mendeley-




Thursday 10 May 12
www. biodiversity.aq
                            -Pictures-




Thursday 10 May 12
data. biodiversity.aq
                     • find primary biodiversity data
                     • visualize occurrence data on map
                     • view taxonomic data
                     • download data
                     • view metrics
                     • send feedback
                     • access technical documentation
Thursday 10 May 12
Data portal recipe
     • Language: Ruby
     • Framework: Rails(ActiveRecord) and YUI
     • (smart) Search engine: Full text (ElasticSearch-Lucene)
     • Database/GIS server/SpatialDB: PostGresql/
       Geoserver/PostGIS
     • Mapping client: OpenLayers
     • Web services: RESTish (all resources)
     • Protocols/Standards: DIF, DwC, DwC-A, Tapir…etc
     • GBIF tools : HIT, IPT
     • Hosting: BeBIF (ULB/VUB joint IT Center)
     • Metadata systems: GCMD API (DIF), EML
Thursday 10 May 12
Data portal recipe




Thursday 10 May 12
Data portal recipe

                       GEO ORIENTED




Thursday 10 May 12
Data portal recipe

                       GEO ORIENTED
                       OPEN SOURCE




Thursday 10 May 12
Data portal recipe

                       GEO ORIENTED
                       OPEN SOURCE
                         FLEXIBLE




Thursday 10 May 12
Data portal recipe

                       GEO ORIENTED
                        OPEN SOURCE
                          FLEXIBLE
                       INTEROPERABLE



Thursday 10 May 12
Data portal recipe

                       GEO ORIENTED
                        OPEN SOURCE
                           FLEXIBLE
                       INTEROPERABLE
                         EXPANDABLE


Thursday 10 May 12
data. biodiversity.aq




Thursday 10 May 12
Thursday 10 May 12
Thursday 10 May 12
Thursday 10 May 12
Thursday 10 May 12
Thursday 10 May 12
ipt. biodiversity.aq
                     • Integrated Publishing Toolkit
                     • standardize and clean your data
                     • manage your primary biodiversity data
                     • manage your associated metadata
                     • choose your collaborators
                     • generate and submit a Data Paper
                     • push data and metadata to Information Systems


Thursday 10 May 12
ipt. biodiversity.aq




Thursday 10 May 12
ipt. biodiversity.aq




Thursday 10 May 12
ipt. biodiversity.aq




Thursday 10 May 12
ipt. biodiversity.aq




Thursday 10 May 12
ipt. biodiversity.aq




Thursday 10 May 12
Reward data publishing




                     Metadata document   Data Paper




Thursday 10 May 12
The Data Paper
        • A scholarly journal publication whose primary purpose is to
          describe a dataset or group of datasets, rather than to
          report a research investigation.
        • Benefits of the Data Paper
              – Scholarly credit to Data Publishers
              – Describe the data in structured human readable form
              – Bring the existence of the data to the attention of the
                scholarly community


Thursday 10 May 12
Incentivising Data Discovery




Thursday 10 May 12
Step-by-Step
       • Complete metadata of a dataset using metadata editor in
         IPT 2.0.2
       • Generate ‘Data Paper’ manuscript (menu: Manage Resource
         – RTF Download)
       • Submit the manuscript for possible publication in one of the
         PenSoft publication (ZooKeys, PhytoKeys, BioRisks,
         NeoBiota, Biodiversity Data Journal, Nature Conservation).
       • Revision (if any) is carried out using metadata editor in IPT
         2.0.2 and manuscript re-submitted to PenSoft Open Journal
         System
Thursday 10 May 12
Once paper is accepted
        • Digital Object Identifier is assigned to the Data Paper
        • Paper is published in (a) print format, (b) PDF format, (c)
          semantically enhanced HTML, and (d) XML is archived in
          PubMedCentral
        • DOI of the Data Paper is linked with the Persistent Identifier
          of the metadata document in the GBIF Registry
        • Data Paper is indexed by Web of Knowledge (ISI),
          PubMedCentral, Scopus, Zoological Record, Google
          Scholar, CAB Abstracts, Directory of Open Access Journal
          (DOAJ), EBSCO.

Thursday 10 May 12
Important to consider

        • Metadata is complete in all the respect
        • All the claims are adequately substantiated
        • Data described in ‘Data Paper’ is freely
          available at the time of submission of the
          manuscript



Thursday 10 May 12
This is real
                                            ZooKeys 185: 73–78 (2012)
                                                             Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition
                                            doi: 10.3897/zookeys.185.3078                                 DAtA PAPEr
                                                                                                                                                                 A peer-reviewed open-access journal

                                                                                                                                                                                               73
                                            www.zookeys.org                                                                                             Launched to accelerate biodiversity research




                                               Antarctic Starfish (Echinodermata, Asteroidea) from
                                                            the ANDEEP3 expedition


                     Impact Factor: 0.514                               Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2

                                            1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt,
                                            1050, Brussels, Belgium

                                            Corresponding author: Bruno Danis (bruno.danis@gmail.com)


                                            Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012

                                            Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3
                                            expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078




                                            Abstract
                                            This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took
                                            place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea.
                                                 Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations
                                            during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged
                                            from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from
                                            -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from
                                            the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a
                                            cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ).
                                                 The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132
                                            specimens.
                                                 The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern
                                            Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this
                                            study, most of the information available focused on starfish from shallower depths than 1000m. This
                                            dataset allowed to make unique observations, such as the fact that some species were only present at
                                            very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti,
                                            Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below
                                            -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster
                                            loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er-
                                            emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)).
                                                 Even if the number of records is relatively small, the data bring many new insights on the taxonomic,
                                            bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The
                                            dataset also brings to light six species, newly reported in the Southern Ocean.
                                                 The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys-
                                            tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux-

                                            Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-
                                            BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.




Thursday 10 May 12
This is real
                                            ZooKeys 185: 73–78 (2012)
                                                             Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition
                                            doi: 10.3897/zookeys.185.3078                                 DAtA PAPEr
                                                                                                                                                                 A peer-reviewed open-access journal

                                                                                                                                                                                               73
                                            www.zookeys.org                                                                                             Launched to accelerate biodiversity research




                                               Antarctic Starfish (Echinodermata, Asteroidea) from
                                                            the ANDEEP3 expedition


                     Impact Factor: 0.514                               Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2

                                            1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt,
                                            1050, Brussels, Belgium

                                            Corresponding author: Bruno Danis (bruno.danis@gmail.com)


                                            Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012

                                            Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3
                                            expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078




                                            Abstract
                                            This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took
                                            place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea.
                                                 Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations
                                            during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged
                                            from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from
                                            -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from
                                            the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a
                                            cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ).
                                                 The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132
                                            specimens.
                                                 The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern
                                            Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this
                                            study, most of the information available focused on starfish from shallower depths than 1000m. This
                                            dataset allowed to make unique observations, such as the fact that some species were only present at
                                            very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti,
                                            Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below
                                            -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster
                                            loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er-
                                            emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)).
                                                 Even if the number of records is relatively small, the data bring many new insights on the taxonomic,
                                            bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The
                                            dataset also brings to light six species, newly reported in the Southern Ocean.
                                                 The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys-
                                            tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux-

                                            Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-
                                            BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.




Thursday 10 May 12
This is real
                                            ZooKeys 185: 73–78 (2012)
                                                             Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition
                                            doi: 10.3897/zookeys.185.3078                                 DAtA PAPEr
                                                                                                                                                                 A peer-reviewed open-access journal

                                                                                                                                                                                               73
                                            www.zookeys.org                                                                                             Launched to accelerate biodiversity research




                                               Antarctic Starfish (Echinodermata, Asteroidea) from
                                                            the ANDEEP3 expedition


                     Impact Factor: 0.514                               Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2

                                            1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt,
                                            1050, Brussels, Belgium

                                            Corresponding author: Bruno Danis (bruno.danis@gmail.com)


                                            Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012

                                            Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3
                                            expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078




                                            Abstract
                                            This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took
                                            place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea.
                                                 Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations
                                            during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged
                                            from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from
                                            -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from
                                            the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a
                                            cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ).
                                                 The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132
                                            specimens.
                                                 The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern
                                            Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this
                                            study, most of the information available focused on starfish from shallower depths than 1000m. This
                                            dataset allowed to make unique observations, such as the fact that some species were only present at
                                            very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti,
                                            Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below
                                            -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster
                                            loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er-
                                            emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)).
                                                 Even if the number of records is relatively small, the data bring many new insights on the taxonomic,
                                            bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The
                                            dataset also brings to light six species, newly reported in the Southern Ocean.
                                                 The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys-
                                            tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux-

                                            Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-
                                            BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.




Thursday 10 May 12
afg. biodiversity.aq
                     • Identification aid
                     • Publication/sharing platform for
                       customized Field Guides
                     • High quality (useful) pictures
                     • Expert Descriptions
                     • Built dynamically from various sources
                     • Generate a pdf for your taxa/area of
                       interest, and share
Thursday 10 May 12
afg. biodiversity.aq




Thursday 10 May 12
afg. biodiversity.aq




Thursday 10 May 12
afg. biodiversity.aq




Thursday 10 May 12
atlas. biodiversity.aq




Thursday 10 May 12
atlas. biodiversity.aq
      • Biogeographic Atlas of the Southern Ocean




Thursday 10 May 12
atlas. biodiversity.aq
      • Biogeographic Atlas of the Southern Ocean

      • Redo of Hedgepeth 1969 Folio




Thursday 10 May 12
atlas. biodiversity.aq
      • Biogeographic Atlas of the Southern Ocean

      • Redo of Hedgepeth 1969 Folio

      • Predictive approach




Thursday 10 May 12
atlas. biodiversity.aq
      • Biogeographic Atlas of the Southern Ocean

      • Redo of Hedgepeth 1969 Folio

      • Predictive approach

      • Static and dynamic versions




Thursday 10 May 12
atlas. biodiversity.aq




Thursday 10 May 12
atlas. biodiversity.aq
      • Dynamic approach to a Biogeographic Atlas




Thursday 10 May 12
atlas. biodiversity.aq
      • Dynamic approach to a Biogeographic Atlas

      • Collaborative project: 70+ specialists involved




Thursday 10 May 12
atlas. biodiversity.aq
      • Dynamic approach to a Biogeographic Atlas

      • Collaborative project: 70+ specialists involved

      • interdisciplinary: taxonomy, oceanography, ecology,
        phylogeography, modelization, data management, GIS,
        conservationists




Thursday 10 May 12
atlas. biodiversity.aq
      • Dynamic approach to a Biogeographic Atlas

      • Collaborative project: 70+ specialists involved

      • interdisciplinary: taxonomy, oceanography, ecology,
        phylogeography, modelization, data management, GIS,
        conservationists

      • Modelization workshop coming up




Thursday 10 May 12
Available data layers   Slope
                                             Bathymetry
                                             Chlorophyll
                                             Distance to the continent
                                             Distance to bird colonies
                                             Distance to ice
                                             Distance to shelf
                                             Distance to canyon
                                             Floor temperature
                                             +
                                             ANTABIF Occurrence
                                             records




Thursday 10 May 12
Available data layers   Slope
                                             Bathymetry
                                             Chlorophyll
                                             Distance to the continent
                                             Distance to bird colonies
                                             Distance to ice
                                             Distance to shelf
                                             Distance to canyon
                                             Floor temperature
                                             +
                                             ANTABIF Occurrence
                                             records




Thursday 10 May 12
Thursday 10 May 12
Perspectives for MARS




Thursday 10 May 12
Community
              • Get the Community involved in data
                management
              • Enhance interoperability
              • Optimize research efforts/resources
              • Towards integrative, connected science
                through Open Access



Thursday 10 May 12
Challenges
                     • Data deluge
                     • Digital divides
                     • Missing data types
                     • Orphan datasets
                     • Cultural change



Thursday 10 May 12
ANTABIF on MARS




Thursday 10 May 12
ANTABIF on MARS
                     • Architectural plasticity




Thursday 10 May 12
ANTABIF on MARS
                     • Architectural plasticity
                     • DarwinCore + MiXS extension




Thursday 10 May 12
ANTABIF on MARS
                     • Architectural plasticity
                     • DarwinCore + MiXS extension
                     • GBIF IPT/HIT




Thursday 10 May 12
ANTABIF on MARS
                     • Architectural plasticity
                     • DarwinCore + MiXS extension
                     • GBIF IPT/HIT
                     • Interoperability




Thursday 10 May 12
ANTABIF on MARS
                     • Architectural plasticity
                     • DarwinCore + MiXS extension
                     • GBIF IPT/HIT
                     • Interoperability
                     • ElasticSearch




Thursday 10 May 12
ANTABIF on MARS
                     • Architectural plasticity
                     • DarwinCore + MiXS extension
                     • GBIF IPT/HIT
                     • Interoperability
                     • ElasticSearch
                     • Strong community




Thursday 10 May 12
ANTABIF on MARS
                     • Architectural plasticity
                     • DarwinCore + MiXS extension
                     • GBIF IPT/HIT
                     • Interoperability
                     • ElasticSearch
                     • Strong community
                     • Incentives and valorization


Thursday 10 May 12
Thanks and questions?




                             @biodiversityaq




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Thursday 10 May 12

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Antabif on mars

  • 1. ANTABIF: Bruno Danis - MARS workshop Architecture and Functionalities Thursday 10 May 12
  • 2. Antarctic Treaty « In order to promote international cooperation in scientific investigation in Antarctica, […], Scientific observations and results from Antarctica shall be exchanged and made freely available. » Thursday 10 May 12
  • 3. Slide stolen from Mark Parsons Our  vision: [ANTARCTIC  BIODIVERSITY]  Data  are   open,  linked,  useful,  interoperable  and  safe. Copyright: © Christian Morel Thursday 10 May 12
  • 4. Antarctic Information Networks - scope Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO David B, Danis B, Griffiths HJ Thursday 10 May 12
  • 5. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO David B, Danis B, Griffiths HJ Thursday 10 May 12
  • 6. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO David B, Danis B, Griffiths HJ Thursday 10 May 12
  • 7. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data • SCAR-MarBIN and ANTABIF projects Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO David B, Danis B, Griffiths HJ Thursday 10 May 12
  • 8. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data • SCAR-MarBIN and ANTABIF projects • Science, conservation and management Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO David B, Danis B, Griffiths HJ Thursday 10 May 12
  • 9. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data • SCAR-MarBIN and ANTABIF projects • Science, conservation and management • Networked community developments Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO David B, Danis B, Griffiths HJ Thursday 10 May 12
  • 10. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data • SCAR-MarBIN and ANTABIF projects • Science, conservation and management • Networked community developments • SCAR-MarBIN: Citations : 423, Publications: 58, H-Index: 11 Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO David B, Danis B, Griffiths HJ Thursday 10 May 12
  • 11. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data • SCAR-MarBIN and ANTABIF projects • Science, conservation and management • Networked community developments • SCAR-MarBIN: Citations : 423, Publications: 58, H-Index: 11 Funding: BELSPO, SLOAN, DFG, AWI, SCAR, AAD, NWO David B, Danis B, Griffiths HJ Thursday 10 May 12
  • 12. Collaboration cloud - who’s in? Thursday 10 May 12
  • 13. Collaboration cloud - who’s in? Thursday 10 May 12
  • 14. Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life De Broyer et al, Register of Antarctic Marine Species 2012 Virtually nothing on Bacteria!! Thursday 10 May 12
  • 15. Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life De Broyer et al, Register of Antarctic Marine Species 2012 Virtually nothing on Bacteria!! Thursday 10 May 12
  • 16. Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and open Danis et al, Antarctic Biodiversity Information Facility 2012 • Virtually nothing on Bacteria!! Thursday 10 May 12
  • 17. Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and open Danis et al, Antarctic Biodiversity Information Facility 2012 • Virtually nothing on Bacteria!! Thursday 10 May 12
  • 18. Antarctic Information Networks - applications Danis et al, The SCAR Antarctic Field Guides 2012 Thursday 10 May 12
  • 19. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation Danis et al, The SCAR Antarctic Field Guides 2012 Thursday 10 May 12
  • 20. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation • Expedition design Danis et al, The SCAR Antarctic Field Guides 2012 Thursday 10 May 12
  • 21. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation • Expedition design • Biogeographic patterns Danis et al, The SCAR Antarctic Field Guides 2012 Thursday 10 May 12
  • 22. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation • Expedition design • Biogeographic patterns • Antarctic Field Guides Danis et al, The SCAR Antarctic Field Guides 2012 Thursday 10 May 12
  • 23. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation • Expedition design • Biogeographic patterns • Antarctic Field Guides • Biogeographic Atlas Danis et al, The SCAR Antarctic Field Guides 2012 Thursday 10 May 12
  • 24. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation • Expedition design • Biogeographic patterns • Antarctic Field Guides • Biogeographic Atlas • Gap analysis Danis et al, The SCAR Antarctic Field Guides 2012 Thursday 10 May 12
  • 27. biodiversity.aq • www.biodiversity.aq Thursday 10 May 12
  • 28. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq Thursday 10 May 12
  • 29. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq Thursday 10 May 12
  • 30. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq Thursday 10 May 12
  • 31. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq Thursday 10 May 12
  • 32. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • share.biodiversity.aq Thursday 10 May 12
  • 33. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • share.biodiversity.aq • mars.biodiversity.aq ? Thursday 10 May 12
  • 34. www. biodiversity.aq • general website • latest news • contact • sponsors • governance • ressources Thursday 10 May 12
  • 35. www. biodiversity.aq -Resources- Thursday 10 May 12
  • 36. www. biodiversity.aq -shared repository- Thursday 10 May 12
  • 37. www. biodiversity.aq -Mendeley- Thursday 10 May 12
  • 38. www. biodiversity.aq -Pictures- Thursday 10 May 12
  • 39. data. biodiversity.aq • find primary biodiversity data • visualize occurrence data on map • view taxonomic data • download data • view metrics • send feedback • access technical documentation Thursday 10 May 12
  • 40. Data portal recipe • Language: Ruby • Framework: Rails(ActiveRecord) and YUI • (smart) Search engine: Full text (ElasticSearch-Lucene) • Database/GIS server/SpatialDB: PostGresql/ Geoserver/PostGIS • Mapping client: OpenLayers • Web services: RESTish (all resources) • Protocols/Standards: DIF, DwC, DwC-A, Tapir…etc • GBIF tools : HIT, IPT • Hosting: BeBIF (ULB/VUB joint IT Center) • Metadata systems: GCMD API (DIF), EML Thursday 10 May 12
  • 42. Data portal recipe GEO ORIENTED Thursday 10 May 12
  • 43. Data portal recipe GEO ORIENTED OPEN SOURCE Thursday 10 May 12
  • 44. Data portal recipe GEO ORIENTED OPEN SOURCE FLEXIBLE Thursday 10 May 12
  • 45. Data portal recipe GEO ORIENTED OPEN SOURCE FLEXIBLE INTEROPERABLE Thursday 10 May 12
  • 46. Data portal recipe GEO ORIENTED OPEN SOURCE FLEXIBLE INTEROPERABLE EXPANDABLE Thursday 10 May 12
  • 53. ipt. biodiversity.aq • Integrated Publishing Toolkit • standardize and clean your data • manage your primary biodiversity data • manage your associated metadata • choose your collaborators • generate and submit a Data Paper • push data and metadata to Information Systems Thursday 10 May 12
  • 59. Reward data publishing Metadata document Data Paper Thursday 10 May 12
  • 60. The Data Paper • A scholarly journal publication whose primary purpose is to describe a dataset or group of datasets, rather than to report a research investigation. • Benefits of the Data Paper – Scholarly credit to Data Publishers – Describe the data in structured human readable form – Bring the existence of the data to the attention of the scholarly community Thursday 10 May 12
  • 62. Step-by-Step • Complete metadata of a dataset using metadata editor in IPT 2.0.2 • Generate ‘Data Paper’ manuscript (menu: Manage Resource – RTF Download) • Submit the manuscript for possible publication in one of the PenSoft publication (ZooKeys, PhytoKeys, BioRisks, NeoBiota, Biodiversity Data Journal, Nature Conservation). • Revision (if any) is carried out using metadata editor in IPT 2.0.2 and manuscript re-submitted to PenSoft Open Journal System Thursday 10 May 12
  • 63. Once paper is accepted • Digital Object Identifier is assigned to the Data Paper • Paper is published in (a) print format, (b) PDF format, (c) semantically enhanced HTML, and (d) XML is archived in PubMedCentral • DOI of the Data Paper is linked with the Persistent Identifier of the metadata document in the GBIF Registry • Data Paper is indexed by Web of Knowledge (ISI), PubMedCentral, Scopus, Zoological Record, Google Scholar, CAB Abstracts, Directory of Open Access Journal (DOAJ), EBSCO. Thursday 10 May 12
  • 64. Important to consider • Metadata is complete in all the respect • All the claims are adequately substantiated • Data described in ‘Data Paper’ is freely available at the time of submission of the manuscript Thursday 10 May 12
  • 65. This is real ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Impact Factor: 0.514 Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Thursday 10 May 12
  • 66. This is real ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Impact Factor: 0.514 Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Thursday 10 May 12
  • 67. This is real ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Impact Factor: 0.514 Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Thursday 10 May 12
  • 68. afg. biodiversity.aq • Identification aid • Publication/sharing platform for customized Field Guides • High quality (useful) pictures • Expert Descriptions • Built dynamically from various sources • Generate a pdf for your taxa/area of interest, and share Thursday 10 May 12
  • 73. atlas. biodiversity.aq • Biogeographic Atlas of the Southern Ocean Thursday 10 May 12
  • 74. atlas. biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio Thursday 10 May 12
  • 75. atlas. biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach Thursday 10 May 12
  • 76. atlas. biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions Thursday 10 May 12
  • 78. atlas. biodiversity.aq • Dynamic approach to a Biogeographic Atlas Thursday 10 May 12
  • 79. atlas. biodiversity.aq • Dynamic approach to a Biogeographic Atlas • Collaborative project: 70+ specialists involved Thursday 10 May 12
  • 80. atlas. biodiversity.aq • Dynamic approach to a Biogeographic Atlas • Collaborative project: 70+ specialists involved • interdisciplinary: taxonomy, oceanography, ecology, phylogeography, modelization, data management, GIS, conservationists Thursday 10 May 12
  • 81. atlas. biodiversity.aq • Dynamic approach to a Biogeographic Atlas • Collaborative project: 70+ specialists involved • interdisciplinary: taxonomy, oceanography, ecology, phylogeography, modelization, data management, GIS, conservationists • Modelization workshop coming up Thursday 10 May 12
  • 82. Available data layers Slope Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature + ANTABIF Occurrence records Thursday 10 May 12
  • 83. Available data layers Slope Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature + ANTABIF Occurrence records Thursday 10 May 12
  • 86. Community • Get the Community involved in data management • Enhance interoperability • Optimize research efforts/resources • Towards integrative, connected science through Open Access Thursday 10 May 12
  • 87. Challenges • Data deluge • Digital divides • Missing data types • Orphan datasets • Cultural change Thursday 10 May 12
  • 89. ANTABIF on MARS • Architectural plasticity Thursday 10 May 12
  • 90. ANTABIF on MARS • Architectural plasticity • DarwinCore + MiXS extension Thursday 10 May 12
  • 91. ANTABIF on MARS • Architectural plasticity • DarwinCore + MiXS extension • GBIF IPT/HIT Thursday 10 May 12
  • 92. ANTABIF on MARS • Architectural plasticity • DarwinCore + MiXS extension • GBIF IPT/HIT • Interoperability Thursday 10 May 12
  • 93. ANTABIF on MARS • Architectural plasticity • DarwinCore + MiXS extension • GBIF IPT/HIT • Interoperability • ElasticSearch Thursday 10 May 12
  • 94. ANTABIF on MARS • Architectural plasticity • DarwinCore + MiXS extension • GBIF IPT/HIT • Interoperability • ElasticSearch • Strong community Thursday 10 May 12
  • 95. ANTABIF on MARS • Architectural plasticity • DarwinCore + MiXS extension • GBIF IPT/HIT • Interoperability • ElasticSearch • Strong community • Incentives and valorization Thursday 10 May 12
  • 96. Thanks and questions? @biodiversityaq image  ©  NY  Times   Thursday 10 May 12