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“An HIV Vaccine: The Neutralizing
           Antibody Problem:”

                     Dennis Burton


     Dept of Immunology & Microbial Science and IAVI
Neutralizing Antibody Center, The Scripps Research Institute

         Center for HIV/AIDS Vaccine Immunology
          and Immunogen Discovery (CHAVI-ID)

         Ragon Institute of MGH, Harvard and MIT

    Symposium on Innovations in Vaccines R&D
             London, Sep 5th 2012
A global view of HIV-1 infection

                 33 million people living with HIV, 2009




UNAIDS: 2010 Report on the global AIDS epidemic. 2010
AIDS compromises human development …
Reversing the spread of AIDS is one of the
 eight U.N. Millennium Development Goals

The AIDS pandemic undermines:
• Poverty reduction
• Improvements in child and maternal health
• Improvements in nutrition
• Gains in basic education
• Control of other infectious diseases
Host cell
The
proteins
in HIV                    CCR5
entry.
           CD4




                    Env spike
                 (gp120)3 (gp41)3




                                    Virion
NAbs block
viral entry.

Successful
vaccines
induce
NAbs.
               Neutralizing Antibody (NAb)
For HIV,
need to
induce
broadly
NAbs
(bNAbs).
Can antibodies be made to conserved
  parts of the HIV spike: are there
    vulnerabilities in the armor?

                   Yes

 A proportion of HIV-infected donors, over
time, make broadly neutralizing antibodies.
Reverse engineering an HIV vaccine


                                                             broadly
                                                             neutralizing (protective)
                                                             antibodies

                                                                   Env

HIV-infected individual
                                                             Molecular characterization
                                                             of Ab-Env




                                                                   Immunogen design
                                                                   and testing
                  *
                                                              *
       combination of several immunogens                      *modified Env
                   = vaccine
                                  (adapted from Burton, Nat. Rev. Immunol., 2:706, 2002)
The NAb Problem: IAVI NAC Approach

                               Structure-based
   bnMAbs                     immunogen design

          Determining structure           Analysis of Ab responses
          of Env-Ab complexes




    MAb              Structural     Immunogen      Immunogen    Clinical
Identification       Biology        Design          Screening    Dev.




                              Feedback loops
                                               Major Block
                  Tools of
   IAVI                                           Slow
                 structural
Protocol G                                     Immunogen
                 genomics
                                                 Screen
Rapid progress since 2009 in terms of
  potency and breadth of bnMAbs
  coverage (%)
A low dose of MAb PGT121 protects against high
 dose SHIV162P3 vaginal challenge in macaques

               av. serum conc.
 dose PGT121    at challenge     no. of macaques
   (mg/kg)          (μg/ml)          protected     % protection

      5              95                5/5             100

      1              15                5/5             100

     0.2             1.7               3/5             60

  control Ab        n.d.               0/4              0
   5mg/kg
>12 V2 / glycans
                                     Vaccine targets defined
            MAbs    (PG9)             by bnMAbs, Sep 2012
            Glycans
        1   (2G12)



     V3 / V4 / glycans
>25 (cluster of targets:
    PGT120s, PGT130s)

         V3/CD4i
    2   (3BC176)                                          gp120
                            MPER
                       >5   (10E8)
     CD4bs                                         gp41
>25 (VRC01)



                                                      viral
                                                    membrane
The NAb Problem: IAVI NAC Approach

                               Structure-based
   bnMAbs                     immunogen design

          Determining structure           Analysis of Ab responses
          of Env-Ab complexes




    MAb              Structural     Immunogen      Immunogen    Clinical
Identification       Biology        Design          Screening    Dev.




                              Feedback loops
                                               Major Block
                  Tools of
   IAVI                                           Slow
                 structural
Protocol G                                     Immunogen
                 genomics
                                                 Screen
Ab-gp120 structures, 2011-12
           (Ian Wilson et al)                        mini-V3

                                              N332
                                                               N30
PGV04-gp120 outer
domain complex:
   CD4bs                        PGT128-gp120 outer
                                domain complex
                                    V3/glycans




                        PGT128-trimer
                        complex by EM
The NAb Problem: IAVI NAC Approach

                               Structure-based
   bnMAbs                     immunogen design

          Determining structure           Analysis of Ab responses
          of Env-Ab complexes




    MAb              Structural     Immunogen      Immunogen    Clinical
Identification       Biology        Design          Screening    Dev.




                              Feedback loops
                                               Major Block
                  Tools of
   IAVI                                           Slow
                 structural
Protocol G                                     Immunogen
                 genomics
                                                 Screen
Successful HIV vaccination will require
considerable ingenuity in immunogen design
   and immunization protocols that go far
          beyond current norms.
How to translate structural data into
                 immunogens?

•Stabilize the antibody-bound target epitope
 conformation.

•Expose that conformation to the immune system.
Dampen responses to off-target epitopes.

•Multimerize with epitope pointed outward.



Additional immunogen features may be needed for HIV,
including the ability to activate germ line B cells and to
                                                                     boost
guide antibody maturation along certain pathways.            prime



    Bill Schief and colleagues
High affinity antibodies are generated by
antigen-driven mutation and selection from a
               naïve repertoire

        Ab affinity

                         Somatic
                      hypermutation

                                      Memory
                                       B cell

     naïve            Antigen
     B-cell
                                                    mature Ab
                                      Plasma




                                                Y
      Germline Ab                       cell
The evolution of antibodies in natural HIV
 infection: clues for vaccine design and
                strategies?

                        From germ line antibodies
                        to broadly neutralizing
                        antibodies in natural HIV
                        infection-what is the
                        route?

                        IAVI Protocol G: 1,800
                        donors, few time points

                        Protocol C: 500 donors,
                        longitudinal study
The central role of CD4 T helper (Tfh) cells in
                Ab responses

                                          Memory
                                           B cell



 naïve        Antigen
 B-cell                                      mature Ab
                           Tfh
                           cell
   Germline
     Ab
                        Germinal center   Plasma




                                                    Y
                                            cell
NAC/CHAVI-ID Priorities (Sept 2012)

I. Complete definition of HIV Env vulnerabilities
   (“enough” bnMAbs, “enough” structures).

II. Understanding the development of bnAb
    responses in natural HIV infection

III. Epitope directed Immunogen Design

IV. Trimer-based Immunogen Design

V. Immunogen evaluation
Collaborators

Scripps        IAVI             VRC            CHAVI-ID

Ian Wilson     Wayne Koff       Gary Nabel     Rafi Ahmed
Pascal Poignard Rick King       John Mascola   Dan Barouch
                                               Dennis Burton
Bill Schief    Clinical sites   Peter Kwong    Shane Crotty
Rich Wyatt    Members of the                   Adam Godzik
              Neutralizing   Ragon             Julie McElrath
Andrew Ward                  Bruce Walker      Michel Nussenzweig
              Antibody
Chi-Huey Wong Consortium     Galit Alter       Bali Pulendran
                             Joe Sodroski      Chris Scanlan
              Protocol G & C                   Bill Schief
              scientists &   Cornell           Guido Silvestri
Monogram      donors         John Moore        Bruce Walker
Theraclone                                     Ian Wilson
                             Miami             Rich Wyatt
                             David Watkins
HIV Vaccines
HIV Vaccines

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HIV Vaccines

  • 1. “An HIV Vaccine: The Neutralizing Antibody Problem:” Dennis Burton Dept of Immunology & Microbial Science and IAVI Neutralizing Antibody Center, The Scripps Research Institute Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery (CHAVI-ID) Ragon Institute of MGH, Harvard and MIT Symposium on Innovations in Vaccines R&D London, Sep 5th 2012
  • 2. A global view of HIV-1 infection 33 million people living with HIV, 2009 UNAIDS: 2010 Report on the global AIDS epidemic. 2010
  • 3. AIDS compromises human development … Reversing the spread of AIDS is one of the eight U.N. Millennium Development Goals The AIDS pandemic undermines: • Poverty reduction • Improvements in child and maternal health • Improvements in nutrition • Gains in basic education • Control of other infectious diseases
  • 4.
  • 5. Host cell The proteins in HIV CCR5 entry. CD4 Env spike (gp120)3 (gp41)3 Virion
  • 6. NAbs block viral entry. Successful vaccines induce NAbs. Neutralizing Antibody (NAb) For HIV, need to induce broadly NAbs (bNAbs).
  • 7.
  • 8. Can antibodies be made to conserved parts of the HIV spike: are there vulnerabilities in the armor? Yes A proportion of HIV-infected donors, over time, make broadly neutralizing antibodies.
  • 9. Reverse engineering an HIV vaccine broadly neutralizing (protective) antibodies Env HIV-infected individual Molecular characterization of Ab-Env Immunogen design and testing * * combination of several immunogens *modified Env = vaccine (adapted from Burton, Nat. Rev. Immunol., 2:706, 2002)
  • 10. The NAb Problem: IAVI NAC Approach Structure-based bnMAbs immunogen design Determining structure Analysis of Ab responses of Env-Ab complexes MAb Structural Immunogen Immunogen Clinical Identification Biology Design Screening Dev. Feedback loops Major Block Tools of IAVI Slow structural Protocol G Immunogen genomics Screen
  • 11. Rapid progress since 2009 in terms of potency and breadth of bnMAbs coverage (%)
  • 12. A low dose of MAb PGT121 protects against high dose SHIV162P3 vaginal challenge in macaques av. serum conc. dose PGT121 at challenge no. of macaques (mg/kg) (μg/ml) protected % protection 5 95 5/5 100 1 15 5/5 100 0.2 1.7 3/5 60 control Ab n.d. 0/4 0 5mg/kg
  • 13. >12 V2 / glycans Vaccine targets defined MAbs (PG9) by bnMAbs, Sep 2012 Glycans 1 (2G12) V3 / V4 / glycans >25 (cluster of targets: PGT120s, PGT130s) V3/CD4i 2 (3BC176) gp120 MPER >5 (10E8) CD4bs gp41 >25 (VRC01) viral membrane
  • 14. The NAb Problem: IAVI NAC Approach Structure-based bnMAbs immunogen design Determining structure Analysis of Ab responses of Env-Ab complexes MAb Structural Immunogen Immunogen Clinical Identification Biology Design Screening Dev. Feedback loops Major Block Tools of IAVI Slow structural Protocol G Immunogen genomics Screen
  • 15. Ab-gp120 structures, 2011-12 (Ian Wilson et al) mini-V3 N332 N30 PGV04-gp120 outer domain complex: CD4bs PGT128-gp120 outer domain complex V3/glycans PGT128-trimer complex by EM
  • 16. The NAb Problem: IAVI NAC Approach Structure-based bnMAbs immunogen design Determining structure Analysis of Ab responses of Env-Ab complexes MAb Structural Immunogen Immunogen Clinical Identification Biology Design Screening Dev. Feedback loops Major Block Tools of IAVI Slow structural Protocol G Immunogen genomics Screen
  • 17. Successful HIV vaccination will require considerable ingenuity in immunogen design and immunization protocols that go far beyond current norms.
  • 18. How to translate structural data into immunogens? •Stabilize the antibody-bound target epitope conformation. •Expose that conformation to the immune system. Dampen responses to off-target epitopes. •Multimerize with epitope pointed outward. Additional immunogen features may be needed for HIV, including the ability to activate germ line B cells and to boost guide antibody maturation along certain pathways. prime Bill Schief and colleagues
  • 19. High affinity antibodies are generated by antigen-driven mutation and selection from a naïve repertoire Ab affinity Somatic hypermutation Memory B cell naïve Antigen B-cell mature Ab Plasma Y Germline Ab cell
  • 20. The evolution of antibodies in natural HIV infection: clues for vaccine design and strategies? From germ line antibodies to broadly neutralizing antibodies in natural HIV infection-what is the route? IAVI Protocol G: 1,800 donors, few time points Protocol C: 500 donors, longitudinal study
  • 21. The central role of CD4 T helper (Tfh) cells in Ab responses Memory B cell naïve Antigen B-cell mature Ab Tfh cell Germline Ab Germinal center Plasma Y cell
  • 22. NAC/CHAVI-ID Priorities (Sept 2012) I. Complete definition of HIV Env vulnerabilities (“enough” bnMAbs, “enough” structures). II. Understanding the development of bnAb responses in natural HIV infection III. Epitope directed Immunogen Design IV. Trimer-based Immunogen Design V. Immunogen evaluation
  • 23. Collaborators Scripps IAVI VRC CHAVI-ID Ian Wilson Wayne Koff Gary Nabel Rafi Ahmed Pascal Poignard Rick King John Mascola Dan Barouch Dennis Burton Bill Schief Clinical sites Peter Kwong Shane Crotty Rich Wyatt Members of the Adam Godzik Neutralizing Ragon Julie McElrath Andrew Ward Bruce Walker Michel Nussenzweig Antibody Chi-Huey Wong Consortium Galit Alter Bali Pulendran Joe Sodroski Chris Scanlan Protocol G & C Bill Schief scientists & Cornell Guido Silvestri Monogram donors John Moore Bruce Walker Theraclone Ian Wilson Miami Rich Wyatt David Watkins