Enviar pesquisa
Carregar
Finding the viral diversity in a biological sample
•
0 gostou
•
769 visualizações
Nacho Caballero
Seguir
Lab meeting presentation.
Leia menos
Leia mais
Educação
Tecnologia
Denunciar
Compartilhar
Denunciar
Compartilhar
1 de 32
Baixar agora
Baixar para ler offline
Recomendados
Virus Hunting in French Guiana
Virus Hunting in French Guiana
Nacho Caballero
Adenovirus service
Adenovirus service
Bennie George
The relative ease of use and reproducibility of
The relative ease of use and reproducibility of
Shiv Nadar University
Lecture 5 and 6 microbial_sem_6_20180307
Lecture 5 and 6 microbial_sem_6_20180307
Ashfaq Ahmad
Viral genome sequencing
Viral genome sequencing
Dynah Perry
Clinical Application of RNA Sequencing - Bladder Cancer
Clinical Application of RNA Sequencing - Bladder Cancer
USD Bioinformatics
Engineering plant immunity using crispr cas9 to generate virus resistance
Engineering plant immunity using crispr cas9 to generate virus resistance
Sheikh Mansoor
Next Generation Sequencing - the basics
Next Generation Sequencing - the basics
USD Bioinformatics
Recomendados
Virus Hunting in French Guiana
Virus Hunting in French Guiana
Nacho Caballero
Adenovirus service
Adenovirus service
Bennie George
The relative ease of use and reproducibility of
The relative ease of use and reproducibility of
Shiv Nadar University
Lecture 5 and 6 microbial_sem_6_20180307
Lecture 5 and 6 microbial_sem_6_20180307
Ashfaq Ahmad
Viral genome sequencing
Viral genome sequencing
Dynah Perry
Clinical Application of RNA Sequencing - Bladder Cancer
Clinical Application of RNA Sequencing - Bladder Cancer
USD Bioinformatics
Engineering plant immunity using crispr cas9 to generate virus resistance
Engineering plant immunity using crispr cas9 to generate virus resistance
Sheikh Mansoor
Next Generation Sequencing - the basics
Next Generation Sequencing - the basics
USD Bioinformatics
CRISPR technology -A revolutionary discovery
CRISPR technology -A revolutionary discovery
P Navaneeth Krishna Menon
Viral genome sequencing
Viral genome sequencing
Creative Enzymes
CRISPR: Discovery & Potential Applications
CRISPR: Discovery & Potential Applications
Kumaraguru Veerasamy
Three types of Lentiviral Vectors - by GEG-tech.com
Three types of Lentiviral Vectors - by GEG-tech.com
Michelle Davis
Eye to eye with an invisible enemy
Eye to eye with an invisible enemy
SABC News
Odyssey Of The IWGSC Reference Genome Sequence: 12 Years 1 Month 28 Days 11 ...
Odyssey Of The IWGSC Reference Genome Sequence: 12 Years 1 Month 28 Days 11 ...
Fabio Caligaris
Crispr
Crispr
HagerMohammed12
Pulling apart the two genomes of the dikaryotic wheat stripe rust fungus
Pulling apart the two genomes of the dikaryotic wheat stripe rust fungus
Benjamin Schwessinger
CRISPER-Cas9
CRISPER-Cas9
Apeksha Kesarwani
Crispr application
Crispr application
Creative Biogene
Design and Evaluation of a 16S-based Integrated Solution to Study Bacterial D...
Design and Evaluation of a 16S-based Integrated Solution to Study Bacterial D...
Thermo Fisher Scientific
Improving methodologies for rapid diagnosis of coinfection in plants (updated...
Improving methodologies for rapid diagnosis of coinfection in plants (updated...
Benjamin Schwessinger
Creative Biolabs-CAMouse™-Fully Human Antibody Generation Platform
Creative Biolabs-CAMouse™-Fully Human Antibody Generation Platform
Creative-Biolabs
Spatial transcriptome profiling by MERFISH reveals sub-cellular RNA compartme...
Spatial transcriptome profiling by MERFISH reveals sub-cellular RNA compartme...
Jean Fan
Random RNA interactions control protein expression in prokaryotes
Random RNA interactions control protein expression in prokaryotes
Paul Gardner
Introduction to second generation sequencing
Introduction to second generation sequencing
Denis C. Bauer
01 Slide_Oscar
01 Slide_Oscar
Oscar Chan
RNA interference in insect pest management (RNAi in ipm)
RNA interference in insect pest management (RNAi in ipm)
Indian Agricultural Research Institute, Pusa Campus, New Delhi
Anti Virus Biomolecular Discovery - Creative Biolabs
Anti Virus Biomolecular Discovery - Creative Biolabs
Creative-Biolabs
Integrated genetic and transcriptional analysis at the single-cell level
Integrated genetic and transcriptional analysis at the single-cell level
Jean Fan
Equine influenza (horse flu)
Equine influenza (horse flu)
Dr. Waqas Nawaz
Veterinary microbiology and microbial disease
Veterinary microbiology and microbial disease
Dr. Waqas Nawaz
Mais conteúdo relacionado
Mais procurados
CRISPR technology -A revolutionary discovery
CRISPR technology -A revolutionary discovery
P Navaneeth Krishna Menon
Viral genome sequencing
Viral genome sequencing
Creative Enzymes
CRISPR: Discovery & Potential Applications
CRISPR: Discovery & Potential Applications
Kumaraguru Veerasamy
Three types of Lentiviral Vectors - by GEG-tech.com
Three types of Lentiviral Vectors - by GEG-tech.com
Michelle Davis
Eye to eye with an invisible enemy
Eye to eye with an invisible enemy
SABC News
Odyssey Of The IWGSC Reference Genome Sequence: 12 Years 1 Month 28 Days 11 ...
Odyssey Of The IWGSC Reference Genome Sequence: 12 Years 1 Month 28 Days 11 ...
Fabio Caligaris
Crispr
Crispr
HagerMohammed12
Pulling apart the two genomes of the dikaryotic wheat stripe rust fungus
Pulling apart the two genomes of the dikaryotic wheat stripe rust fungus
Benjamin Schwessinger
CRISPER-Cas9
CRISPER-Cas9
Apeksha Kesarwani
Crispr application
Crispr application
Creative Biogene
Design and Evaluation of a 16S-based Integrated Solution to Study Bacterial D...
Design and Evaluation of a 16S-based Integrated Solution to Study Bacterial D...
Thermo Fisher Scientific
Improving methodologies for rapid diagnosis of coinfection in plants (updated...
Improving methodologies for rapid diagnosis of coinfection in plants (updated...
Benjamin Schwessinger
Creative Biolabs-CAMouse™-Fully Human Antibody Generation Platform
Creative Biolabs-CAMouse™-Fully Human Antibody Generation Platform
Creative-Biolabs
Spatial transcriptome profiling by MERFISH reveals sub-cellular RNA compartme...
Spatial transcriptome profiling by MERFISH reveals sub-cellular RNA compartme...
Jean Fan
Random RNA interactions control protein expression in prokaryotes
Random RNA interactions control protein expression in prokaryotes
Paul Gardner
Introduction to second generation sequencing
Introduction to second generation sequencing
Denis C. Bauer
01 Slide_Oscar
01 Slide_Oscar
Oscar Chan
RNA interference in insect pest management (RNAi in ipm)
RNA interference in insect pest management (RNAi in ipm)
Indian Agricultural Research Institute, Pusa Campus, New Delhi
Anti Virus Biomolecular Discovery - Creative Biolabs
Anti Virus Biomolecular Discovery - Creative Biolabs
Creative-Biolabs
Integrated genetic and transcriptional analysis at the single-cell level
Integrated genetic and transcriptional analysis at the single-cell level
Jean Fan
Mais procurados
(20)
CRISPR technology -A revolutionary discovery
CRISPR technology -A revolutionary discovery
Viral genome sequencing
Viral genome sequencing
CRISPR: Discovery & Potential Applications
CRISPR: Discovery & Potential Applications
Three types of Lentiviral Vectors - by GEG-tech.com
Three types of Lentiviral Vectors - by GEG-tech.com
Eye to eye with an invisible enemy
Eye to eye with an invisible enemy
Odyssey Of The IWGSC Reference Genome Sequence: 12 Years 1 Month 28 Days 11 ...
Odyssey Of The IWGSC Reference Genome Sequence: 12 Years 1 Month 28 Days 11 ...
Crispr
Crispr
Pulling apart the two genomes of the dikaryotic wheat stripe rust fungus
Pulling apart the two genomes of the dikaryotic wheat stripe rust fungus
CRISPER-Cas9
CRISPER-Cas9
Crispr application
Crispr application
Design and Evaluation of a 16S-based Integrated Solution to Study Bacterial D...
Design and Evaluation of a 16S-based Integrated Solution to Study Bacterial D...
Improving methodologies for rapid diagnosis of coinfection in plants (updated...
Improving methodologies for rapid diagnosis of coinfection in plants (updated...
Creative Biolabs-CAMouse™-Fully Human Antibody Generation Platform
Creative Biolabs-CAMouse™-Fully Human Antibody Generation Platform
Spatial transcriptome profiling by MERFISH reveals sub-cellular RNA compartme...
Spatial transcriptome profiling by MERFISH reveals sub-cellular RNA compartme...
Random RNA interactions control protein expression in prokaryotes
Random RNA interactions control protein expression in prokaryotes
Introduction to second generation sequencing
Introduction to second generation sequencing
01 Slide_Oscar
01 Slide_Oscar
RNA interference in insect pest management (RNAi in ipm)
RNA interference in insect pest management (RNAi in ipm)
Anti Virus Biomolecular Discovery - Creative Biolabs
Anti Virus Biomolecular Discovery - Creative Biolabs
Integrated genetic and transcriptional analysis at the single-cell level
Integrated genetic and transcriptional analysis at the single-cell level
Destaque
Equine influenza (horse flu)
Equine influenza (horse flu)
Dr. Waqas Nawaz
Veterinary microbiology and microbial disease
Veterinary microbiology and microbial disease
Dr. Waqas Nawaz
Production of feather meal
Production of feather meal
Dr. Waqas Nawaz
Equine tetanus (lockjaw)
Equine tetanus (lockjaw)
Dr. Waqas Nawaz
Laboratory diagnosis of viral infection
Laboratory diagnosis of viral infection
Mahidol University, Thailand
Some interesting wildlife records
Some interesting wildlife records
Dr. Waqas Nawaz
Prions , prions diseases & pcr
Prions , prions diseases & pcr
Dr. Waqas Nawaz
Manual on meat inspection for developing countries
Manual on meat inspection for developing countries
Dr. Waqas Nawaz
Sample collection
Sample collection
Asfar Zaman
Anatomy & physiology of arthropods
Anatomy & physiology of arthropods
Dr. Waqas Nawaz
Labaratoryservices
Labaratoryservices
rathodrameshwar68
Meat processing hygeine
Meat processing hygeine
Dr. Waqas Nawaz
Fungal,viral, bacterial, parasitic and nutritionalinfection of urinary system
Fungal,viral, bacterial, parasitic and nutritionalinfection of urinary system
Dr. Waqas Nawaz
Purpura haemorrhagica
Purpura haemorrhagica
Dr. Waqas Nawaz
Strangles
Strangles
Dr. Waqas Nawaz
Commercial poultry nutritio
Commercial poultry nutritio
Dr. Waqas Nawaz
Brackish water fishes
Brackish water fishes
Dr. Waqas Nawaz
Equine viral arteritis (eva)
Equine viral arteritis (eva)
Dr. Waqas Nawaz
Rabbit ileal loop test
Rabbit ileal loop test
Dr. Waqas Nawaz
Eastern equine encephalitis (eee)
Eastern equine encephalitis (eee)
Dr. Waqas Nawaz
Destaque
(20)
Equine influenza (horse flu)
Equine influenza (horse flu)
Veterinary microbiology and microbial disease
Veterinary microbiology and microbial disease
Production of feather meal
Production of feather meal
Equine tetanus (lockjaw)
Equine tetanus (lockjaw)
Laboratory diagnosis of viral infection
Laboratory diagnosis of viral infection
Some interesting wildlife records
Some interesting wildlife records
Prions , prions diseases & pcr
Prions , prions diseases & pcr
Manual on meat inspection for developing countries
Manual on meat inspection for developing countries
Sample collection
Sample collection
Anatomy & physiology of arthropods
Anatomy & physiology of arthropods
Labaratoryservices
Labaratoryservices
Meat processing hygeine
Meat processing hygeine
Fungal,viral, bacterial, parasitic and nutritionalinfection of urinary system
Fungal,viral, bacterial, parasitic and nutritionalinfection of urinary system
Purpura haemorrhagica
Purpura haemorrhagica
Strangles
Strangles
Commercial poultry nutritio
Commercial poultry nutritio
Brackish water fishes
Brackish water fishes
Equine viral arteritis (eva)
Equine viral arteritis (eva)
Rabbit ileal loop test
Rabbit ileal loop test
Eastern equine encephalitis (eee)
Eastern equine encephalitis (eee)
Mais de Nacho Caballero
A Spanish Daily Routine for People Who Struggle with Daily Routines
A Spanish Daily Routine for People Who Struggle with Daily Routines
Nacho Caballero
Single-Cell Transcriptome Analysis of Pluripotent Stem Cells
Single-Cell Transcriptome Analysis of Pluripotent Stem Cells
Nacho Caballero
Using the Host Immune Response to Hemorrhagic Fever Viruses to Understand Pat...
Using the Host Immune Response to Hemorrhagic Fever Viruses to Understand Pat...
Nacho Caballero
A good looking pipeline
A good looking pipeline
Nacho Caballero
3 Ways to Obliterate Bullet Points From Your Slides - Slide Makeover 2
3 Ways to Obliterate Bullet Points From Your Slides - Slide Makeover 2
Nacho Caballero
Creating effective slides without having to become a graphic designer
Creating effective slides without having to become a graphic designer
Nacho Caballero
How to Build Compelling Research Stories That People Will Remember
How to Build Compelling Research Stories That People Will Remember
Nacho Caballero
Viral biodiversity in rodents
Viral biodiversity in rodents
Nacho Caballero
Bridging data analysis and interactive visualization
Bridging data analysis and interactive visualization
Nacho Caballero
High-resolution transcriptome of human macrophages
High-resolution transcriptome of human macrophages
Nacho Caballero
Early detection of highly pathogenic viral infections
Early detection of highly pathogenic viral infections
Nacho Caballero
Lab meeting 25/9
Lab meeting 25/9
Nacho Caballero
Lassa virus detection using gene expression analysis
Lassa virus detection using gene expression analysis
Nacho Caballero
An RNA reset button
An RNA reset button
Nacho Caballero
Buck v Bell
Buck v Bell
Nacho Caballero
HIV-1 Antibodies
HIV-1 Antibodies
Nacho Caballero
Squamous Cell Carcinoma: Looking for tale-tell signs
Squamous Cell Carcinoma: Looking for tale-tell signs
Nacho Caballero
29 Mammalian Genomes
29 Mammalian Genomes
Nacho Caballero
Gene Extrapolation Models for Toxicogenomic Data
Gene Extrapolation Models for Toxicogenomic Data
Nacho Caballero
Sequence Alignment by Information Compression
Sequence Alignment by Information Compression
Nacho Caballero
Mais de Nacho Caballero
(20)
A Spanish Daily Routine for People Who Struggle with Daily Routines
A Spanish Daily Routine for People Who Struggle with Daily Routines
Single-Cell Transcriptome Analysis of Pluripotent Stem Cells
Single-Cell Transcriptome Analysis of Pluripotent Stem Cells
Using the Host Immune Response to Hemorrhagic Fever Viruses to Understand Pat...
Using the Host Immune Response to Hemorrhagic Fever Viruses to Understand Pat...
A good looking pipeline
A good looking pipeline
3 Ways to Obliterate Bullet Points From Your Slides - Slide Makeover 2
3 Ways to Obliterate Bullet Points From Your Slides - Slide Makeover 2
Creating effective slides without having to become a graphic designer
Creating effective slides without having to become a graphic designer
How to Build Compelling Research Stories That People Will Remember
How to Build Compelling Research Stories That People Will Remember
Viral biodiversity in rodents
Viral biodiversity in rodents
Bridging data analysis and interactive visualization
Bridging data analysis and interactive visualization
High-resolution transcriptome of human macrophages
High-resolution transcriptome of human macrophages
Early detection of highly pathogenic viral infections
Early detection of highly pathogenic viral infections
Lab meeting 25/9
Lab meeting 25/9
Lassa virus detection using gene expression analysis
Lassa virus detection using gene expression analysis
An RNA reset button
An RNA reset button
Buck v Bell
Buck v Bell
HIV-1 Antibodies
HIV-1 Antibodies
Squamous Cell Carcinoma: Looking for tale-tell signs
Squamous Cell Carcinoma: Looking for tale-tell signs
29 Mammalian Genomes
29 Mammalian Genomes
Gene Extrapolation Models for Toxicogenomic Data
Gene Extrapolation Models for Toxicogenomic Data
Sequence Alignment by Information Compression
Sequence Alignment by Information Compression
Último
Micro-Scholarship, What it is, How can it help me.pdf
Micro-Scholarship, What it is, How can it help me.pdf
Poh-Sun Goh
Introduction to Nonprofit Accounting: The Basics
Introduction to Nonprofit Accounting: The Basics
TechSoup
Mehran University Newsletter Vol-X, Issue-I, 2024
Mehran University Newsletter Vol-X, Issue-I, 2024
Mehran University of Engineering & Technology, Jamshoro
Seal of Good Local Governance (SGLG) 2024Final.pptx
Seal of Good Local Governance (SGLG) 2024Final.pptx
negromaestrong
ICT role in 21st century education and it's challenges.
ICT role in 21st century education and it's challenges.
MaryamAhmad92
1029 - Danh muc Sach Giao Khoa 10 . pdf
1029 - Danh muc Sach Giao Khoa 10 . pdf
QucHHunhnh
Application orientated numerical on hev.ppt
Application orientated numerical on hev.ppt
RamjanShidvankar
Holdier Curriculum Vitae (April 2024).pdf
Holdier Curriculum Vitae (April 2024).pdf
agholdier
UGC NET Paper 1 Mathematical Reasoning & Aptitude.pdf
UGC NET Paper 1 Mathematical Reasoning & Aptitude.pdf
Nirmal Dwivedi
On National Teacher Day, meet the 2024-25 Kenan Fellows
On National Teacher Day, meet the 2024-25 Kenan Fellows
Mebane Rash
Sociology 101 Demonstration of Learning Exhibit
Sociology 101 Demonstration of Learning Exhibit
jbellavia9
This PowerPoint helps students to consider the concept of infinity.
This PowerPoint helps students to consider the concept of infinity.
christianmathematics
Unit-V; Pricing (Pharma Marketing Management).pptx
Unit-V; Pricing (Pharma Marketing Management).pptx
VishalSingh1417
Asian American Pacific Islander Month DDSD 2024.pptx
Asian American Pacific Islander Month DDSD 2024.pptx
David Douglas School District
Understanding Accommodations and Modifications
Understanding Accommodations and Modifications
MJDuyan
Russian Escort Service in Delhi 11k Hotel Foreigner Russian Call Girls in Delhi
Russian Escort Service in Delhi 11k Hotel Foreigner Russian Call Girls in Delhi
kauryashika82
Spatium Project Simulation student brief
Spatium Project Simulation student brief
Association for Project Management
Mixin Classes in Odoo 17 How to Extend Models Using Mixin Classes
Mixin Classes in Odoo 17 How to Extend Models Using Mixin Classes
Celine George
Dyslexia AI Workshop for Slideshare.pptx
Dyslexia AI Workshop for Slideshare.pptx
callscotland1987
General Principles of Intellectual Property: Concepts of Intellectual Proper...
General Principles of Intellectual Property: Concepts of Intellectual Proper...
Poonam Aher Patil
Último
(20)
Micro-Scholarship, What it is, How can it help me.pdf
Micro-Scholarship, What it is, How can it help me.pdf
Introduction to Nonprofit Accounting: The Basics
Introduction to Nonprofit Accounting: The Basics
Mehran University Newsletter Vol-X, Issue-I, 2024
Mehran University Newsletter Vol-X, Issue-I, 2024
Seal of Good Local Governance (SGLG) 2024Final.pptx
Seal of Good Local Governance (SGLG) 2024Final.pptx
ICT role in 21st century education and it's challenges.
ICT role in 21st century education and it's challenges.
1029 - Danh muc Sach Giao Khoa 10 . pdf
1029 - Danh muc Sach Giao Khoa 10 . pdf
Application orientated numerical on hev.ppt
Application orientated numerical on hev.ppt
Holdier Curriculum Vitae (April 2024).pdf
Holdier Curriculum Vitae (April 2024).pdf
UGC NET Paper 1 Mathematical Reasoning & Aptitude.pdf
UGC NET Paper 1 Mathematical Reasoning & Aptitude.pdf
On National Teacher Day, meet the 2024-25 Kenan Fellows
On National Teacher Day, meet the 2024-25 Kenan Fellows
Sociology 101 Demonstration of Learning Exhibit
Sociology 101 Demonstration of Learning Exhibit
This PowerPoint helps students to consider the concept of infinity.
This PowerPoint helps students to consider the concept of infinity.
Unit-V; Pricing (Pharma Marketing Management).pptx
Unit-V; Pricing (Pharma Marketing Management).pptx
Asian American Pacific Islander Month DDSD 2024.pptx
Asian American Pacific Islander Month DDSD 2024.pptx
Understanding Accommodations and Modifications
Understanding Accommodations and Modifications
Russian Escort Service in Delhi 11k Hotel Foreigner Russian Call Girls in Delhi
Russian Escort Service in Delhi 11k Hotel Foreigner Russian Call Girls in Delhi
Spatium Project Simulation student brief
Spatium Project Simulation student brief
Mixin Classes in Odoo 17 How to Extend Models Using Mixin Classes
Mixin Classes in Odoo 17 How to Extend Models Using Mixin Classes
Dyslexia AI Workshop for Slideshare.pptx
Dyslexia AI Workshop for Slideshare.pptx
General Principles of Intellectual Property: Concepts of Intellectual Proper...
General Principles of Intellectual Property: Concepts of Intellectual Proper...
Finding the viral diversity in a biological sample
1.
Finding the viral biodiversity in
a biological sample nacho caballero pasteur cayenne
2.
Viral genome
3.
Viral genome Biological Sample
4.
5.
6.
Isolate the viruses
7.
Viral genome
8.
Viral genome Biological Sample
9.
Viral genome Sequenced reads
10.
Read-based alignment requires
a reference sequence
11.
Read-based alignment requires
a reference sequence
12.
De novo alignment
depends strongly on fragment size
13.
De novo alignment
depends strongly on fragment size Small K
14.
De novo alignment
depends strongly on fragment size Small K
15.
De novo alignment
depends strongly on fragment size
16.
De novo alignment
depends strongly on fragment size Large K
17.
18.
19.
Each sequencing error
adds k erroneous k-mers
20.
Each sequencing error
adds k erroneous k-mers
21.
Each sequencing error
adds k erroneous k-mers
22.
There is an
optimum fragment size between 31 and 41 bp 16M Total Contig Size (bp) normalized not normalized 8M 0 k
23.
Normalizing doesn’t decrease performance Number of
viruses normalized not normalized k
24.
Vipr reports more viruses
than NCBI vipr protein ncbi nucleotide ncbi protein Number of viruses k
25.
Most assemblies contain unique
viruses Number of viruses Assembly
26.
Most assemblies contain unique
viruses Number of viruses Assembly
27.
Most assemblies contain unique
viruses Number of viruses Assembly
28.
Most contigs don’t
align to known viral sequences
29.
Flavi, Pox, Arteri and
Corona are the major viral families
30.
Understand differences between assemblies
31.
Understand differences between assemblies Measure
viral gene expression
32.
Understand differences between assemblies Measure
viral gene expression Determine the effects of human perturbation
Baixar agora