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The Informatics Transform:
Re-engineering Libraries for
the Data Decade

Dr Liz Lyon, Associate Director, UK Digital Curation Centre
Director, UKOLN, University of Bath, UK

VALA2012, Melbourne, Australia


            This work is licensed under a Creative Commons Licence
            Attribution-ShareAlike 2.0




                                                 UKOLN is supported by:


        www.ukoln.ac.uk
        A centre of expertise in digital information management
“Data is the new oil.”
 Andreas Weigend, Stanford (ex Amazon)


“The future belongs to
companies and people that turn
data into products”

Mike Loukides, O’Reilly Media
http://www.google.co.uk/imgres?q=illumina+bgi&hl=en&client=firefox-




                                       Data...
                                                             a&hs=Jl2&rls=org.mozilla:en-GB:official&biw=1366&bih




 http://www.flickr.com/photos/think
 mulejunk/352387473/




                                          http://www.flickr.com/photos/charleswelch/3597432481//
http://www.flickr.com/photos/usfsregion5/4546851916//                                 http://www.flickr.com/photos/wasp_barcode/4793484478/
Oceans:
                                                                  last unmapped
                                                                  frontier?
http://www.wired.com/wiredscience/2011/09/ocean-sensor-network/




                                                           http://bohemianadventures.blogspot.com.au/2010/06/bering-sea-
                                                           day-1-dutch-harbor.html
..using personal
data for research
Share your genome data?
            • Buy a DTC kit
            • Join a project
In a recent 2011 survey, Nature asked its readers
whether they had, or would consider, a genome
analysis (n=1588)
                                         Have
                                         not/would not
                               15%
                                            Not sure
 Would if                             13%
 given the      54%
 opportunity

                                  18%
                                         Have had
                                         genome
                                         analysis
Consumer data…
One in every nine people on Earth is
                             on Facebook
30billion pieces of content are shared on
Facebook each month

People upload 3000images to Flickr every
                                 minute

Google+ has > 25million users

               From 20 Social Media Statistics (Jeffbullas)
…and conversations




                     http://www.touchagency.com/free-twitter-infographic/
“Data is the new oil.”
 Andreas Weigend, Stanford (ex Amazon)


Data is more like soup –
its messy and you don’t
know what’s in it….
Kyle Machulis




“DIY”
Human
physiology
data
             http://www.technologyreview.com/biomedicine/37784/
“Herculean” and
“Heroic”


Particle
physics
data
“Crowd-
sourced”
astronomy
Researchers need help to
manage their data.

This is a really exciting
opportunity for libraries…..
with a bit of re-engineering




                               http://www.flickr.com/photos/49397559@N02/5899381202/
1. Leadership

(Getting attention…)
Six reasons why you should care
about managing your research data
1. Risk: where is your data?




 Photo credits: Harvey Rutt http://www.ecs.soton.ac.uk/regenesis/pictures/
2. Reputation : data access, FOI
3. Quality: data gold standard




http://www.sciencemag.org/content/334/6060/1226.full.html
4. Scale: an explosion of data




     http://www.phgfoundation.org/reports/10364/



“A single sequencer can now generate in a day what it took 10
years to collect for the Human Genome Project”
5.Partnerships

           Alzheimer’s Disease Neuroimaging Initiative:
            a unique (open) $60M partnership between
           NIH, FDA, universities and drug companies.
“It was unbelievable. Its not science the way
    most of us have practiced in our careers.
  But we all realised that we would never get
biomarkers unless all of us parked our egos
   and intellectual property noses outside the
   door and agreed that all of our data would
                      be public immediately.”
                      Dr John Trojanowski, University of Pennsylvania
6. Funding


  EPSRC expects all those institutions it funds
•to develop a roadmap that aligns their policies
and processes with EPSRC’s expectations by
1st May 2012;
•to be fully compliant with these expectations
by 1st May 2015.
http://www.epsrc.ac.uk/about/standards/researchdata/Pages/expectations.aspx
•   Awareness of regulatory environment
•   Data access statement
•   Policies and processes
•   Data storage
•   Structured metadata descriptions
•   DOIs for data
•   Securely preserved for a minimum of
    10 years
Sticks
                                                         …and Carrots




http://www.cartoonstock.com/lowres/csl4846l.jpg   http://www.flickr.com/photos/darshan-shah/6237564870/
2. Research Data
Management services

(Providing tools & support)
Understanding Data Requirements




http://www.dcc.ac.uk/
Data management plans
• Advocacy & Training
  • Informatics: disciplinary
    metadata schema, standards,
    formats, identifiers, ontologies
  • Storage: file-store, cloud, data
    centres, funder policy
  • Access: embargoes, FOI
What data to keep




How to cite data
Data Licensing
• Bespoke licences
• Standard licences
• Multiple licensing
• Licence mechanisms
Tools to track impact




 http://total-impact.org/
Research360@Bath
• Partnership
  approach
    • UKOLN-DCC
    • Library
    • IT services
    • Research Support
      Office
    • Doctoral Training
      Centres

http://blogs.bath.ac.uk/research360/
Partnership approach
Library & institutional stakeholders

•Roles (7 listed)
•Responsibilities
•Requirements
•Relationships
Liz Lyon, Informatics Transform, Ariadne Issue 68, 2012
•       Director IS/CIO/University Librarian
•       Data librarians /data scientist
        /liaison/subject/faculty librarians
•       Repository managers
•       IT/Computing Services
•       Research Support/Innovation Office
•       Doctoral Training Centres
•       PVC Research
        Data roles
    Liz Lyon, Informatics Transform,
    Ariadne Issue 68, 2012
Full mapping : Informatics Transform, Ariadne Issue 68, 2012
3. Developing data informatics
capacity & capability

(Acquiring the skills….)
RLUK/Mary Auckland:
                             Reskilling for Research
                               9 areas are skill gaps
                                for subject librarians



Sheila Corrall: Libraries,
Librarians and Data
Many action exemplars



2012: Libraries in review
Skill gap                     2-5 years Now
  Preserving research outputs   49%          10%

  Data management & curation    48%          16%
  Comply with funder mandates   40%          16%
  Data manipulation tools       34%          7%
  Data mining                   33%          3%
  Metadata                      29%          10%
  Preservation of project records 24%        3%
  Sources of research funding   21%          8%
  Metadata schema, discipline   16%          2%
  standards, practices

Data from RLUK/Mary Auckland: Reskilling for Research 2012
Pause for reflection….

•     Skills shortage for data informatics?
•     Reposition LIS curriculum?
•     LIS entry requirements?
•     Get credit for informatics work?


    Lyon, Informatics Transform, Ariadne 2012
Play for action….

1. Define core components of
   data informatics

  • Visualisation e.g. VisTrails
  • Workflow e.g. Taverna
  • Analysis e.g. R
Lyon, Informatics Transform, Ariadne 2012
“Very few librarians are
 likely to have specialist
 scientific or medical
 knowledge - if you train as
 a research scientist or a
 medic, you probably won’t
 become a librarian.”

RLUK/Mary Auckland: Reskilling for Research 2012
Play for action….
1. Analyse LIS entry qualifications
   & increase STEM entrants

 Target
 • Biologists
 • Chemists
 • Mathematicians
          Lyon, Informatics Transform, Ariadne 2012
Let’s get together
Play for action….
1. International Data Informatics
   Working Group to explore
   promotion, recognition & reward

 • Global awareness campaign
 • Career incentives
 • Benchmark good practice
         Lyon, Informatics Transform, Ariadne 2012
Position                       Location
Science Data Librarian         Stanford
Data Management Librarian      Oregon State
Social Sciences Data Librarian Brown
Data Curation Librarian        Northeastern
Data Librarian                 New South Wales
Research Data Management       Sydney
Co-ordinator
Research Data & Digital        Cambridge
Curation Officer
Data Services Librarian        Iowa
Data Analyst                   ANDS
Institutional Data Scientist   Bath
Data
journalist?




        Data
        artist?
Implications of
                                                                    “Big Data” and
                                                                    data science for
                                                                    organisations in
                                                                    all sectors

                                                                    Predicts a
                                                                    shortage of
                                                                    190,000
                                                                    data scientists
                                                                    by 2019
http://www.mckinsey.com/Insights/MGI/Research/Technology_and_Inno
vation/Big_data_The_next_frontier_for_innovation
“Big Data”
Data scientist




Data Science Revealed
community survey
http://www.emc.com/collateral/about/n
ews/emc-data-science-study-wp.pdf
For a University, research data is a
key element of “Big Data”.

Managing research data effectively
will give business advantage.
Data-intensive research
                   •   Intelligence
                   •   Decision-making
                   •   Planning
                   •   Investment
                   •   Capacity
                   •   Capability
http://communitymodel.sharepoint.com/
Community
Capability
Model
Framework
CCMF

         • Research Funders
         • Institutions
         • Research leaders/PIs
                 http://communitymodel.sharepoint.com/
“The ability to take data
-to be able to understand
it, to process it, to extract
value from it, to visualise
it, to communicate it
-that’s going to be a hugely
important skill in the next
decades.”
     Hal Varian, Chief Economist, Google
Libraries are on a data journey
-the Informatics Transform is
the first step in a new
direction…
Thank you!

Informatics Transform article (in press)
http://ariadne.ac.uk/issue68/lyon   use details:

Slides
http://www.ukoln.ac.uk/ukoln/staff/e.j.lyon/presentations.html


DCC http://www.dcc.ac.uk

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Informatics Transform : Re-engineering Libraries for the Data Decade

  • 1. The Informatics Transform: Re-engineering Libraries for the Data Decade Dr Liz Lyon, Associate Director, UK Digital Curation Centre Director, UKOLN, University of Bath, UK VALA2012, Melbourne, Australia This work is licensed under a Creative Commons Licence Attribution-ShareAlike 2.0 UKOLN is supported by: www.ukoln.ac.uk A centre of expertise in digital information management
  • 2. “Data is the new oil.” Andreas Weigend, Stanford (ex Amazon) “The future belongs to companies and people that turn data into products” Mike Loukides, O’Reilly Media
  • 3. http://www.google.co.uk/imgres?q=illumina+bgi&hl=en&client=firefox- Data... a&hs=Jl2&rls=org.mozilla:en-GB:official&biw=1366&bih http://www.flickr.com/photos/think mulejunk/352387473/ http://www.flickr.com/photos/charleswelch/3597432481// http://www.flickr.com/photos/usfsregion5/4546851916// http://www.flickr.com/photos/wasp_barcode/4793484478/
  • 4. Oceans: last unmapped frontier? http://www.wired.com/wiredscience/2011/09/ocean-sensor-network/ http://bohemianadventures.blogspot.com.au/2010/06/bering-sea- day-1-dutch-harbor.html
  • 6. Share your genome data? • Buy a DTC kit • Join a project
  • 7. In a recent 2011 survey, Nature asked its readers whether they had, or would consider, a genome analysis (n=1588) Have not/would not 15% Not sure Would if 13% given the 54% opportunity 18% Have had genome analysis
  • 9. One in every nine people on Earth is on Facebook 30billion pieces of content are shared on Facebook each month People upload 3000images to Flickr every minute Google+ has > 25million users From 20 Social Media Statistics (Jeffbullas)
  • 10. …and conversations http://www.touchagency.com/free-twitter-infographic/
  • 11. “Data is the new oil.” Andreas Weigend, Stanford (ex Amazon) Data is more like soup – its messy and you don’t know what’s in it….
  • 12. Kyle Machulis “DIY” Human physiology data http://www.technologyreview.com/biomedicine/37784/
  • 15. Researchers need help to manage their data. This is a really exciting opportunity for libraries…..
  • 16. with a bit of re-engineering http://www.flickr.com/photos/49397559@N02/5899381202/
  • 18. Six reasons why you should care about managing your research data
  • 19. 1. Risk: where is your data? Photo credits: Harvey Rutt http://www.ecs.soton.ac.uk/regenesis/pictures/
  • 20. 2. Reputation : data access, FOI
  • 21. 3. Quality: data gold standard http://www.sciencemag.org/content/334/6060/1226.full.html
  • 22. 4. Scale: an explosion of data http://www.phgfoundation.org/reports/10364/ “A single sequencer can now generate in a day what it took 10 years to collect for the Human Genome Project”
  • 23. 5.Partnerships Alzheimer’s Disease Neuroimaging Initiative: a unique (open) $60M partnership between NIH, FDA, universities and drug companies. “It was unbelievable. Its not science the way most of us have practiced in our careers. But we all realised that we would never get biomarkers unless all of us parked our egos and intellectual property noses outside the door and agreed that all of our data would be public immediately.” Dr John Trojanowski, University of Pennsylvania
  • 24. 6. Funding EPSRC expects all those institutions it funds •to develop a roadmap that aligns their policies and processes with EPSRC’s expectations by 1st May 2012; •to be fully compliant with these expectations by 1st May 2015. http://www.epsrc.ac.uk/about/standards/researchdata/Pages/expectations.aspx
  • 25. Awareness of regulatory environment • Data access statement • Policies and processes • Data storage • Structured metadata descriptions • DOIs for data • Securely preserved for a minimum of 10 years
  • 26. Sticks …and Carrots http://www.cartoonstock.com/lowres/csl4846l.jpg http://www.flickr.com/photos/darshan-shah/6237564870/
  • 27. 2. Research Data Management services (Providing tools & support)
  • 30. • Advocacy & Training • Informatics: disciplinary metadata schema, standards, formats, identifiers, ontologies • Storage: file-store, cloud, data centres, funder policy • Access: embargoes, FOI
  • 31. What data to keep How to cite data
  • 32. Data Licensing • Bespoke licences • Standard licences • Multiple licensing • Licence mechanisms
  • 33. Tools to track impact http://total-impact.org/
  • 34. Research360@Bath • Partnership approach • UKOLN-DCC • Library • IT services • Research Support Office • Doctoral Training Centres http://blogs.bath.ac.uk/research360/
  • 35. Partnership approach Library & institutional stakeholders •Roles (7 listed) •Responsibilities •Requirements •Relationships Liz Lyon, Informatics Transform, Ariadne Issue 68, 2012
  • 36. Director IS/CIO/University Librarian • Data librarians /data scientist /liaison/subject/faculty librarians • Repository managers • IT/Computing Services • Research Support/Innovation Office • Doctoral Training Centres • PVC Research Data roles Liz Lyon, Informatics Transform, Ariadne Issue 68, 2012
  • 37. Full mapping : Informatics Transform, Ariadne Issue 68, 2012
  • 38. 3. Developing data informatics capacity & capability (Acquiring the skills….)
  • 39. RLUK/Mary Auckland: Reskilling for Research 9 areas are skill gaps for subject librarians Sheila Corrall: Libraries, Librarians and Data Many action exemplars 2012: Libraries in review
  • 40. Skill gap 2-5 years Now Preserving research outputs 49% 10% Data management & curation 48% 16% Comply with funder mandates 40% 16% Data manipulation tools 34% 7% Data mining 33% 3% Metadata 29% 10% Preservation of project records 24% 3% Sources of research funding 21% 8% Metadata schema, discipline 16% 2% standards, practices Data from RLUK/Mary Auckland: Reskilling for Research 2012
  • 41. Pause for reflection…. • Skills shortage for data informatics? • Reposition LIS curriculum? • LIS entry requirements? • Get credit for informatics work? Lyon, Informatics Transform, Ariadne 2012
  • 42. Play for action…. 1. Define core components of data informatics • Visualisation e.g. VisTrails • Workflow e.g. Taverna • Analysis e.g. R Lyon, Informatics Transform, Ariadne 2012
  • 43. “Very few librarians are likely to have specialist scientific or medical knowledge - if you train as a research scientist or a medic, you probably won’t become a librarian.” RLUK/Mary Auckland: Reskilling for Research 2012
  • 44. Play for action…. 1. Analyse LIS entry qualifications & increase STEM entrants Target • Biologists • Chemists • Mathematicians Lyon, Informatics Transform, Ariadne 2012
  • 46. Play for action…. 1. International Data Informatics Working Group to explore promotion, recognition & reward • Global awareness campaign • Career incentives • Benchmark good practice Lyon, Informatics Transform, Ariadne 2012
  • 47. Position Location Science Data Librarian Stanford Data Management Librarian Oregon State Social Sciences Data Librarian Brown Data Curation Librarian Northeastern Data Librarian New South Wales Research Data Management Sydney Co-ordinator Research Data & Digital Cambridge Curation Officer Data Services Librarian Iowa Data Analyst ANDS Institutional Data Scientist Bath
  • 48. Data journalist? Data artist?
  • 49. Implications of “Big Data” and data science for organisations in all sectors Predicts a shortage of 190,000 data scientists by 2019 http://www.mckinsey.com/Insights/MGI/Research/Technology_and_Inno vation/Big_data_The_next_frontier_for_innovation
  • 50. “Big Data” Data scientist Data Science Revealed community survey http://www.emc.com/collateral/about/n ews/emc-data-science-study-wp.pdf
  • 51. For a University, research data is a key element of “Big Data”. Managing research data effectively will give business advantage.
  • 52. Data-intensive research • Intelligence • Decision-making • Planning • Investment • Capacity • Capability http://communitymodel.sharepoint.com/
  • 53. Community Capability Model Framework CCMF • Research Funders • Institutions • Research leaders/PIs http://communitymodel.sharepoint.com/
  • 54. “The ability to take data -to be able to understand it, to process it, to extract value from it, to visualise it, to communicate it -that’s going to be a hugely important skill in the next decades.” Hal Varian, Chief Economist, Google
  • 55. Libraries are on a data journey -the Informatics Transform is the first step in a new direction…
  • 56. Thank you! Informatics Transform article (in press) http://ariadne.ac.uk/issue68/lyon use details: Slides http://www.ukoln.ac.uk/ukoln/staff/e.j.lyon/presentations.html DCC http://www.dcc.ac.uk