SlideShare uma empresa Scribd logo

Networks of proteins and diseases

•Transferir como PPT, PDF•
•
Lars Juhl Jensen
Lars Juhl Jensen
Tecnologia
1 de 140
Networks of proteins and diseases Lars Juhl Jensen
sequence analysis
protein networks
de Lichtenberg, Jensen et al., Science, 2005
adverse drug reactions
Campillos, Kuhn et al., Science, 2008
group leader
cofounder
data mining
proteomics
text mining
biomedical literature
electronic health records
protein networks
guilt by association
STRING
computational predictions
gene fusion
Korbel et al., Nature Biotechnology, 2004
gene neighborhood
Korbel et al., Nature Biotechnology, 2004
phylogenetic profiles
Korbel et al., Nature Biotechnology, 2004
experimental data
gene coexpression
protein interactions
Jensen & Bork, Science, 2008
curated knowledge
complexes
pathways
Letunic & Bork, Trends in Biochemical Sciences, 2008
many databases
different formats
different identifiers
variable quality
not comparable
hard work
quality scores
von Mering et al., Nucleic Acids Research, 2005
calibrate vs. gold standard
missing most of the data
text mining
>10 km
too much to read
computer
as smart as a dog
teach it specific tricks
named entity recognition
comprehensive lexicon
CDC2
cyclin dependent kinase 1
expansion rules
hCdc2
CDC2
flexible matching
cyclin-dependent kinase 1
cyclin dependent kinase 1
“black list”
SDS
augmented browsing
Reflect
browser add-on
real-time text mining
Pafilis, O’Donoghue, Jensen et al., Nature Biotechnology, 2009 O’Donoghue et al., Journal of Web Semantics, 2010
information extraction
co-mentioning
within documents
within paragraphs
within sentences
text corpus
~22 million abstracts
no access
~4 million full-text articles
localization and disease
general approach
COMPARTMENTS
TISSUES
DISEASES
curated knowledge
experimental data
text mining
computational predictions
common identifiers
quality scores
visualization
compartments.jensenlab.org
tissues.jensenlab.org
dissemination
web interfaces
web services
diseases.jensenlab.org
bulk download
disease networks
medical data
electronic health records
central registries
individual hospitals
Jensen et al., Nature Reviews Genetics, 2012
structured data
Jensen et al., Nature Reviews Genetics, 2012
unstructured data
in Danish
by busy doctors
confounding factors
age and gender
reporting bias
custom dictionaries
typo rules
age/gender matching
comorbidity
Jensen et al., Nature Reviews Genetics, 2012
Roque et al., PLOS Computational Biology, 2011
temporal correlation
diagnosis trajectories
Jensen et al., in preparation, 2013
pharmocovigilance
adverse drug reactions
Eriksson et al., submitted, 2013
ADR profiles
Eriksson et al., submitted, 2013
ADR frequencies
Eriksson et al., submitted, 2013
molecular basis
protein networks
Acknowledgments STRING Christian von Mering Damian Szklarczyk Michael Kuhn Manuel Stark Samuel Chaffron Chris Creevey Jean Muller Tobias Doerks Philippe Julien Alexander Roth Milan Simonovic Jan Korbel Berend Snel Martijn Huynen Peer Bork Text mining Sune Frankild Evangelos Pafilis Kalliopi Tsafou Alberto Santos Janos Binder Heiko Horn Michael Kuhn Nigel Brown Reinhardt Schneider Sean O’ Donoghue EHR mining Anders Boeck Jensen Peter Bjødstrup Jensen Francisco S. Roque Henriette Schmock Marlene Dalgaard Massimo Andreatta Thomas Hansen Karen Søeby Søren Bredkjær Anders Juul Tudor Oprea Pope Moseley Thomas Werge Søren Brunak
Thank you!

Recomendados

Network biology
Network biologyNetwork biology
Network biologyLars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseasesLars Juhl Jensen
 
One tagger, many uses - Illustrating the power of ontologies in named entity ...
One tagger, many uses - Illustrating the power of ontologies in named entity ...One tagger, many uses - Illustrating the power of ontologies in named entity ...
One tagger, many uses - Illustrating the power of ontologies in named entity ...Lars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseasesLars Juhl Jensen
 
Cellular Network Biology
Cellular Network BiologyCellular Network Biology
Cellular Network BiologyLars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text miningLars Juhl Jensen
 

Recomendados

Network biology
Network biologyNetwork biology
Network biologyLars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseasesLars Juhl Jensen
 
One tagger, many uses - Illustrating the power of ontologies in named entity ...
One tagger, many uses - Illustrating the power of ontologies in named entity ...One tagger, many uses - Illustrating the power of ontologies in named entity ...
One tagger, many uses - Illustrating the power of ontologies in named entity ...Lars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseasesLars Juhl Jensen
 
Cellular Network Biology
Cellular Network BiologyCellular Network Biology
Cellular Network BiologyLars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text miningLars Juhl Jensen
 
STRING - Protein networks from data and text mining
STRING - Protein networks from data and text miningSTRING - Protein networks from data and text mining
STRING - Protein networks from data and text miningLars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningLars Juhl Jensen
 
Medical bioinformatics: Current trends, industry needs, and core competencies
Medical bioinformatics: Current trends, industry needs, and core competenciesMedical bioinformatics: Current trends, industry needs, and core competencies
Medical bioinformatics: Current trends, industry needs, and core competenciesLars Juhl Jensen
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text miningLars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningLars Juhl Jensen
 
Introduction to STRING
Introduction to STRINGIntroduction to STRING
Introduction to STRINGLars Juhl Jensen
 
Medical data and text mining - Linking diseases, drugs, and adverse reactions
Medical data and text mining - Linking diseases, drugs, and adverse reactionsMedical data and text mining - Linking diseases, drugs, and adverse reactions
Medical data and text mining - Linking diseases, drugs, and adverse reactionsLars Juhl Jensen
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textLars Juhl Jensen
 
The Genomics Revolution: The Good, The Bad, The Ugly
The Genomics Revolution: The Good, The Bad, The UglyThe Genomics Revolution: The Good, The Bad, The Ugly
The Genomics Revolution: The Good, The Bad, The UglyEmiliano De Cristofaro
 
Data and Text Mining
Data and Text MiningData and Text Mining
Data and Text MiningLars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textLars Juhl Jensen
 
STRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textSTRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textLars Juhl Jensen
 
Cellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous dataCellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous dataLars Juhl Jensen
 
Gene Association Networks: Large-scale integration of data and text
Gene Association Networks: Large-scale integration of data and textGene Association Networks: Large-scale integration of data and text
Gene Association Networks: Large-scale integration of data and textLars Juhl Jensen
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textLars Juhl Jensen
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textLars Juhl Jensen
 
STRING/STITCH tutorial
STRING/STITCH tutorialSTRING/STITCH tutorial
STRING/STITCH tutorialbiocs
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textLars Juhl Jensen
 
STRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningSTRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningLars Juhl Jensen
 
Turning big data and text collections into web resrouces
Turning big data and text collections into web resroucesTurning big data and text collections into web resrouces
Turning big data and text collections into web resroucesLars Juhl Jensen
 
Mining the Antibodypedia
Mining the AntibodypediaMining the Antibodypedia
Mining the AntibodypediaLars Juhl Jensen
 
Text and data mining
Text and data miningText and data mining
Text and data miningLars Juhl Jensen
 

Mais conteúdo relacionado

Mais procurados

STRING - Protein networks from data and text mining
STRING - Protein networks from data and text miningSTRING - Protein networks from data and text mining
STRING - Protein networks from data and text miningLars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningLars Juhl Jensen
 
Medical bioinformatics: Current trends, industry needs, and core competencies
Medical bioinformatics: Current trends, industry needs, and core competenciesMedical bioinformatics: Current trends, industry needs, and core competencies
Medical bioinformatics: Current trends, industry needs, and core competenciesLars Juhl Jensen
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text miningLars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningLars Juhl Jensen
 
Medical data and text mining - Linking diseases, drugs, and adverse reactions
Medical data and text mining - Linking diseases, drugs, and adverse reactionsMedical data and text mining - Linking diseases, drugs, and adverse reactions
Medical data and text mining - Linking diseases, drugs, and adverse reactionsLars Juhl Jensen
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textLars Juhl Jensen
 
The Genomics Revolution: The Good, The Bad, The Ugly
The Genomics Revolution: The Good, The Bad, The UglyThe Genomics Revolution: The Good, The Bad, The Ugly
The Genomics Revolution: The Good, The Bad, The UglyEmiliano De Cristofaro
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textLars Juhl Jensen
 
STRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textSTRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textLars Juhl Jensen
 
Cellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous dataCellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous dataLars Juhl Jensen
 
Gene Association Networks: Large-scale integration of data and text
Gene Association Networks: Large-scale integration of data and textGene Association Networks: Large-scale integration of data and text
Gene Association Networks: Large-scale integration of data and textLars Juhl Jensen
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textLars Juhl Jensen
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textLars Juhl Jensen
 
STRING/STITCH tutorial
STRING/STITCH tutorialSTRING/STITCH tutorial
STRING/STITCH tutorialbiocs
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textLars Juhl Jensen
 
STRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningSTRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningLars Juhl Jensen
 
Turning big data and text collections into web resrouces
Turning big data and text collections into web resroucesTurning big data and text collections into web resrouces
Turning big data and text collections into web resroucesLars Juhl Jensen
 

Mais procurados (20)

STRING - Protein networks from data and text mining
STRING - Protein networks from data and text miningSTRING - Protein networks from data and text mining
STRING - Protein networks from data and text mining
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text mining
 
Medical bioinformatics: Current trends, industry needs, and core competencies
Medical bioinformatics: Current trends, industry needs, and core competenciesMedical bioinformatics: Current trends, industry needs, and core competencies
Medical bioinformatics: Current trends, industry needs, and core competencies
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text mining
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text mining
 
Introduction to STRING
Introduction to STRINGIntroduction to STRING
Introduction to STRING
 
Medical data and text mining - Linking diseases, drugs, and adverse reactions
Medical data and text mining - Linking diseases, drugs, and adverse reactionsMedical data and text mining - Linking diseases, drugs, and adverse reactions
Medical data and text mining - Linking diseases, drugs, and adverse reactions
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and text
 
The Genomics Revolution: The Good, The Bad, The Ugly
The Genomics Revolution: The Good, The Bad, The UglyThe Genomics Revolution: The Good, The Bad, The Ugly
The Genomics Revolution: The Good, The Bad, The Ugly
 
Data and Text Mining
Data and Text MiningData and Text Mining
Data and Text Mining
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
 
STRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textSTRING - Large-scale integration of data and text
STRING - Large-scale integration of data and text
 
Cellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous dataCellular network biology: Proteome-wide analysis of heterogeneous data
Cellular network biology: Proteome-wide analysis of heterogeneous data
 
Gene Association Networks: Large-scale integration of data and text
Gene Association Networks: Large-scale integration of data and textGene Association Networks: Large-scale integration of data and text
Gene Association Networks: Large-scale integration of data and text
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
 
STRING/STITCH tutorial
STRING/STITCH tutorialSTRING/STITCH tutorial
STRING/STITCH tutorial
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
 
STRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningSTRING: Protein networks from data and text mining
STRING: Protein networks from data and text mining
 
Turning big data and text collections into web resrouces
Turning big data and text collections into web resroucesTurning big data and text collections into web resrouces
Turning big data and text collections into web resrouces
 

Destaque

Just-in-time assembly: Transcriptional and post-translational cell-cycle regu...
Just-in-time assembly: Transcriptional and post-translational cell-cycle regu...Just-in-time assembly: Transcriptional and post-translational cell-cycle regu...
Just-in-time assembly: Transcriptional and post-translational cell-cycle regu...Lars Juhl Jensen
 
Complementing patient records with registry data on cormormidity
Complementing patient records with registry data on cormormidityComplementing patient records with registry data on cormormidity
Complementing patient records with registry data on cormormidityLars Juhl Jensen
 
Mining heterogeneous data: Understanding systems at the level of complexes an...
Mining heterogeneous data: Understanding systems at the level of complexes an...Mining heterogeneous data: Understanding systems at the level of complexes an...
Mining heterogeneous data: Understanding systems at the level of complexes an...Lars Juhl Jensen
 

Destaque (6)

Mining the Antibodypedia
Mining the AntibodypediaMining the Antibodypedia
Mining the Antibodypedia
 
Text and data mining
Text and data miningText and data mining
Text and data mining
 
Just-in-time assembly: Transcriptional and post-translational cell-cycle regu...
Just-in-time assembly: Transcriptional and post-translational cell-cycle regu...Just-in-time assembly: Transcriptional and post-translational cell-cycle regu...
Just-in-time assembly: Transcriptional and post-translational cell-cycle regu...
 
Text mining exercise
Text mining exerciseText mining exercise
Text mining exercise
 
Complementing patient records with registry data on cormormidity
Complementing patient records with registry data on cormormidityComplementing patient records with registry data on cormormidity
Complementing patient records with registry data on cormormidity
 
Mining heterogeneous data: Understanding systems at the level of complexes an...
Mining heterogeneous data: Understanding systems at the level of complexes an...Mining heterogeneous data: Understanding systems at the level of complexes an...
Mining heterogeneous data: Understanding systems at the level of complexes an...
 

Semelhante a Networks of proteins and diseases

The STRING database and related tools
The STRING database and related toolsThe STRING database and related tools
The STRING database and related toolsLars Juhl Jensen
 
Large-scale biomedical data and text integration
Large-scale biomedical data and text integrationLarge-scale biomedical data and text integration
Large-scale biomedical data and text integrationLars Juhl Jensen
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text miningLars Juhl Jensen
 
STRING: Large-scale data and text mining
STRING: Large-scale data and text miningSTRING: Large-scale data and text mining
STRING: Large-scale data and text miningLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textLars Juhl Jensen
 
Network biology: Large-scale biomedical data and text mining
Network biology: Large-scale biomedical data and text miningNetwork biology: Large-scale biomedical data and text mining
Network biology: Large-scale biomedical data and text miningLars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textLars Juhl Jensen
 
Protein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and textProtein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and textLars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and textLars Juhl Jensen
 
Integration of heterogeneous data
Integration of heterogeneous dataIntegration of heterogeneous data
Integration of heterogeneous dataLars Juhl Jensen
 
Systems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological systemSystems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological systemLars Juhl Jensen
 
Systems biology: Bioinformatics on complete biological systems
Systems biology: Bioinformatics on complete biological systemsSystems biology: Bioinformatics on complete biological systems
Systems biology: Bioinformatics on complete biological systemsLars Juhl Jensen
 
Systems biology - Understanding biology at the systems level
Systems biology - Understanding biology at the systems levelSystems biology - Understanding biology at the systems level
Systems biology - Understanding biology at the systems levelLars Juhl Jensen
 
Unraveling signaling networks by data integration
Unraveling signaling networks by data integrationUnraveling signaling networks by data integration
Unraveling signaling networks by data integrationLars Juhl Jensen
 

Semelhante a Networks of proteins and diseases (19)

The STRING database and related tools
The STRING database and related toolsThe STRING database and related tools
The STRING database and related tools
 
Large-scale biomedical data and text integration
Large-scale biomedical data and text integrationLarge-scale biomedical data and text integration
Large-scale biomedical data and text integration
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text mining
 
STRING: Large-scale data and text mining
STRING: Large-scale data and text miningSTRING: Large-scale data and text mining
STRING: Large-scale data and text mining
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
 
Network biology: Large-scale biomedical data and text mining
Network biology: Large-scale biomedical data and text miningNetwork biology: Large-scale biomedical data and text mining
Network biology: Large-scale biomedical data and text mining
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
 
Protein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and textProtein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and text
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
 
Network biology
Network biologyNetwork biology
Network biology
 
Integration of heterogeneous data
Integration of heterogeneous dataIntegration of heterogeneous data
Integration of heterogeneous data
 
Systems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological systemSystems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological system
 
Systems biology: Bioinformatics on complete biological systems
Systems biology: Bioinformatics on complete biological systemsSystems biology: Bioinformatics on complete biological systems
Systems biology: Bioinformatics on complete biological systems
 
Systems biology - Understanding biology at the systems level
Systems biology - Understanding biology at the systems levelSystems biology - Understanding biology at the systems level
Systems biology - Understanding biology at the systems level
 
Disease systems biology
Disease systems biologyDisease systems biology
Disease systems biology
 
Disease Systems Biology
Disease Systems BiologyDisease Systems Biology
Disease Systems Biology
 
Unraveling signaling networks by data integration
Unraveling signaling networks by data integrationUnraveling signaling networks by data integration
Unraveling signaling networks by data integration
 

Mais de Lars Juhl Jensen

One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...Lars Juhl Jensen
 
One tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineOne tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineLars Juhl Jensen
 
Extract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationExtract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationLars Juhl Jensen
 
Network visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeNetwork visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeLars Juhl Jensen
 
STRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataSTRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataLars Juhl Jensen
 
Biomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textBiomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textLars Juhl Jensen
 
Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Lars Juhl Jensen
 
Network Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeNetwork Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeLars Juhl Jensen
 
Cellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textCellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textLars Juhl Jensen
 
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Lars Juhl Jensen
 
STRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataSTRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataLars Juhl Jensen
 
Tagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionTagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionLars Juhl Jensen
 
Medical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsMedical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsLars Juhl Jensen
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textLars Juhl Jensen
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsLars Juhl Jensen
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textLars Juhl Jensen
 
Biomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationBiomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationLars Juhl Jensen
 
The Art of Counting: Scoring and ranking co-occurrences in literature
The Art of Counting: Scoring and ranking co-occurrences in literatureThe Art of Counting: Scoring and ranking co-occurrences in literature
The Art of Counting: Scoring and ranking co-occurrences in literatureLars Juhl Jensen
 
Text-mining-based retrieval of protein networks
Text-mining-based retrieval of protein networksText-mining-based retrieval of protein networks
Text-mining-based retrieval of protein networksLars Juhl Jensen
 

Mais de Lars Juhl Jensen (20)

One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...
 
One tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineOne tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicine
 
Extract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationExtract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotation
 
Network visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeNetwork visualization: A crash course on using Cytoscape
Network visualization: A crash course on using Cytoscape
 
STRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataSTRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous data
 
Biomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textBiomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured text
 
Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...
 
Network Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeNetwork Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and Cytoscape
 
Cellular networks
Cellular networksCellular networks
Cellular networks
 
Cellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textCellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and text
 
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
 
STRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataSTRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous data
 
Tagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionTagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognition
 
Medical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsMedical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactions
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactions
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Biomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationBiomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritization
 
The Art of Counting: Scoring and ranking co-occurrences in literature
The Art of Counting: Scoring and ranking co-occurrences in literatureThe Art of Counting: Scoring and ranking co-occurrences in literature
The Art of Counting: Scoring and ranking co-occurrences in literature
 
Text-mining-based retrieval of protein networks
Text-mining-based retrieval of protein networksText-mining-based retrieval of protein networks
Text-mining-based retrieval of protein networks
 

Último

Tech-Forward - Achieving Business Readiness For Copilot in Microsoft 365
Tech-Forward - Achieving Business Readiness For Copilot in Microsoft 365Tech-Forward - Achieving Business Readiness For Copilot in Microsoft 365
Tech-Forward - Achieving Business Readiness For Copilot in Microsoft 3652toLead Limited
 
Histor y of HAM Radio presentation slide
Histor y of HAM Radio presentation slideHistor y of HAM Radio presentation slide
Histor y of HAM Radio presentation slidevu2urc
 
Swan(sea) Song – personal research during my six years at Swansea ... and bey...
Swan(sea) Song – personal research during my six years at Swansea ... and bey...Swan(sea) Song – personal research during my six years at Swansea ... and bey...
Swan(sea) Song – personal research during my six years at Swansea ... and bey...Alan Dix
 
Scaling API-first – The story of a global engineering organization
Scaling API-first – The story of a global engineering organizationScaling API-first – The story of a global engineering organization
Scaling API-first – The story of a global engineering organizationRadu Cotescu
 
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...shyamraj55
 
Maximizing Board Effectiveness 2024 Webinar.pptx
Maximizing Board Effectiveness 2024 Webinar.pptxMaximizing Board Effectiveness 2024 Webinar.pptx
Maximizing Board Effectiveness 2024 Webinar.pptxOnBoard
 
SQL Database Design For Developers at php[tek] 2024
SQL Database Design For Developers at php[tek] 2024SQL Database Design For Developers at php[tek] 2024
SQL Database Design For Developers at php[tek] 2024Scott Keck-Warren
 
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...Miguel Araújo
 
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhi
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | DelhiFULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhi
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhisoniya singh
 
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdf
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdfThe Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdf
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdfEnterprise Knowledge
 
Unblocking The Main Thread Solving ANRs and Frozen Frames
Unblocking The Main Thread Solving ANRs and Frozen FramesUnblocking The Main Thread Solving ANRs and Frozen Frames
Unblocking The Main Thread Solving ANRs and Frozen FramesSinan KOZAK
 
The Codex of Business Writing Software for Real-World Solutions 2.pptx
The Codex of Business Writing Software for Real-World Solutions 2.pptxThe Codex of Business Writing Software for Real-World Solutions 2.pptx
The Codex of Business Writing Software for Real-World Solutions 2.pptxMalak Abu Hammad
 
From Event to Action: Accelerate Your Decision Making with Real-Time Automation
From Event to Action: Accelerate Your Decision Making with Real-Time AutomationFrom Event to Action: Accelerate Your Decision Making with Real-Time Automation
From Event to Action: Accelerate Your Decision Making with Real-Time AutomationSafe Software
 
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024BookNet Canada
 
🐬 The future of MySQL is Postgres 🐘
🐬 The future of MySQL is Postgres 🐘🐬 The future of MySQL is Postgres 🐘
🐬 The future of MySQL is Postgres 🐘RTylerCroy
 
IAC 2024 - IA Fast Track to Search Focused AI Solutions
IAC 2024 - IA Fast Track to Search Focused AI SolutionsIAC 2024 - IA Fast Track to Search Focused AI Solutions
IAC 2024 - IA Fast Track to Search Focused AI SolutionsEnterprise Knowledge
 
Transcript: #StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
Transcript: #StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024Transcript: #StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
Transcript: #StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024BookNet Canada
 
The 7 Things I Know About Cyber Security After 25 Years | April 2024
The 7 Things I Know About Cyber Security After 25 Years | April 2024The 7 Things I Know About Cyber Security After 25 Years | April 2024
The 7 Things I Know About Cyber Security After 25 Years | April 2024Rafal Los
 
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...HostedbyConfluent
 
08448380779 Call Girls In Greater Kailash - I Women Seeking Men
08448380779 Call Girls In Greater Kailash - I Women Seeking Men08448380779 Call Girls In Greater Kailash - I Women Seeking Men
08448380779 Call Girls In Greater Kailash - I Women Seeking MenDelhi Call girls
 

Último (20)

Tech-Forward - Achieving Business Readiness For Copilot in Microsoft 365
Tech-Forward - Achieving Business Readiness For Copilot in Microsoft 365Tech-Forward - Achieving Business Readiness For Copilot in Microsoft 365
Tech-Forward - Achieving Business Readiness For Copilot in Microsoft 365
 
Histor y of HAM Radio presentation slide
Histor y of HAM Radio presentation slideHistor y of HAM Radio presentation slide
Histor y of HAM Radio presentation slide
 
Swan(sea) Song – personal research during my six years at Swansea ... and bey...
Swan(sea) Song – personal research during my six years at Swansea ... and bey...Swan(sea) Song – personal research during my six years at Swansea ... and bey...
Swan(sea) Song – personal research during my six years at Swansea ... and bey...
 
Scaling API-first – The story of a global engineering organization
Scaling API-first – The story of a global engineering organizationScaling API-first – The story of a global engineering organization
Scaling API-first – The story of a global engineering organization
 
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...
Automating Business Process via MuleSoft Composer | Bangalore MuleSoft Meetup...
 
Maximizing Board Effectiveness 2024 Webinar.pptx
Maximizing Board Effectiveness 2024 Webinar.pptxMaximizing Board Effectiveness 2024 Webinar.pptx
Maximizing Board Effectiveness 2024 Webinar.pptx
 
SQL Database Design For Developers at php[tek] 2024
SQL Database Design For Developers at php[tek] 2024SQL Database Design For Developers at php[tek] 2024
SQL Database Design For Developers at php[tek] 2024
 
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
 
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhi
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | DelhiFULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhi
FULL ENJOY 🔝 8264348440 🔝 Call Girls in Diplomatic Enclave | Delhi
 
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdf
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdfThe Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdf
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdf
 
Unblocking The Main Thread Solving ANRs and Frozen Frames
Unblocking The Main Thread Solving ANRs and Frozen FramesUnblocking The Main Thread Solving ANRs and Frozen Frames
Unblocking The Main Thread Solving ANRs and Frozen Frames
 
The Codex of Business Writing Software for Real-World Solutions 2.pptx
The Codex of Business Writing Software for Real-World Solutions 2.pptxThe Codex of Business Writing Software for Real-World Solutions 2.pptx
The Codex of Business Writing Software for Real-World Solutions 2.pptx
 
From Event to Action: Accelerate Your Decision Making with Real-Time Automation
From Event to Action: Accelerate Your Decision Making with Real-Time AutomationFrom Event to Action: Accelerate Your Decision Making with Real-Time Automation
From Event to Action: Accelerate Your Decision Making with Real-Time Automation
 
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
#StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
 
🐬 The future of MySQL is Postgres 🐘
🐬 The future of MySQL is Postgres 🐘🐬 The future of MySQL is Postgres 🐘
🐬 The future of MySQL is Postgres 🐘
 
IAC 2024 - IA Fast Track to Search Focused AI Solutions
IAC 2024 - IA Fast Track to Search Focused AI SolutionsIAC 2024 - IA Fast Track to Search Focused AI Solutions
IAC 2024 - IA Fast Track to Search Focused AI Solutions
 
Transcript: #StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
Transcript: #StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024Transcript: #StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
Transcript: #StandardsGoals for 2024: What’s new for BISAC - Tech Forum 2024
 
The 7 Things I Know About Cyber Security After 25 Years | April 2024
The 7 Things I Know About Cyber Security After 25 Years | April 2024The 7 Things I Know About Cyber Security After 25 Years | April 2024
The 7 Things I Know About Cyber Security After 25 Years | April 2024
 
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...
Transforming Data Streams with Kafka Connect: An Introduction to Single Messa...
 
08448380779 Call Girls In Greater Kailash - I Women Seeking Men
08448380779 Call Girls In Greater Kailash - I Women Seeking Men08448380779 Call Girls In Greater Kailash - I Women Seeking Men
08448380779 Call Girls In Greater Kailash - I Women Seeking Men
 

Networks of proteins and diseases