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Analysis of metagenomes

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Lars Juhl Jensen
Lars Juhl Jensen

Max Planck Institute for Marine Microbiology, Bremen, Germany, August 24-25, 2007

Technology
1 of 32
Analysis of metagenomes Lars Juhl Jensen EMBL Heidelberg
the challenge
the sheer amount of data
 
what can we do with it?
function prediction
sequence homology
gene neighborhood
 
exploitation
bioremediation
 
statistical analyses
comparing environments
Underground Mine Biofilm Surface Sea Water Farm Soil Deep Sea Whale Skeleton
GC content
 
effective genome size
 
phylogenetic composition
 
functional fingerprints
 
visualization
 
metabolic reactions
 
saltmats are like onions …
… they have layers
 
 
Acknowledgments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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Analysis of metagenomes