Advanced Use of Properties and Scripts in TIBCO Spotfire

Advanced Use of Properties and Scripts in TIBCO Spotfire ,[object Object],Janssen Research & Development Herwig Van Marck

Overview ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Trellis Simulation Team, Player Name A t B a t s B i l l M u e l l e r E d g a r R e n t e r i a J o h n n y D a m o n M a n n y R a m i r e z A r a m i s R a m i r e z D e r r e k L e e J e r r y H a i r s t o n M i c h a e l B a r r e t t T o d d H o l l a n d s w … A . J . P i e r z y n s k i C a r l E v e r e t t J o e C r e d e P a u l K o n e r k o T a d a h i t o I g u c h i B o s t o n C h i C u b s C h i S o x B i l l M u e l l e r E d g a r R e n t e r i a J o h n n y D a m o n M a n n y R a m i r e z A r a m i s R a m i r e z D e r r e k L e e J e r r y H a i r s t o n M i c h a e l B a r r e t t T o d d H o l l a n d s w … A . J . P i e r z y n s k i C a r l E v e r e t t J o e C r e d e P a u l K o n e r k o T a d a h i t o I g u c h i B o s t o n C h i C u b s C h i S o x B i l l M u e l l e r E d g a r R e n t e r i a J o h n n y D a m o n M a n n y R a m i r e z A r a m i s R a m i r e z D e r r e k L e e J e r r y H a i r s t o n M i c h a e l B a r r e t t T o d d H o l l a n d s w … A . J . P i e r z y n s k i C a r l E v e r e t t J o e C r e d e P a u l K o n e r k o T a d a h i t o I g u c h i B o s t o n C h i C u b s C h i S o x 600 550 500 450 400 350 300 250 200 Boston Chi Cubs Chi Sox Color by Team Boston Chi Cubs Chi Sox

Trellis Simulation B i l l M u e l l e r D a v i d O r t i z E d g a r R e n t e r i a J a s o n V a r i t e k J o h n n y D a m o n K e v i n M i l l a r M a n n y R a m i r e z T r o t N i x o n A r a m i s R a m i r e z C o r e y P a t t e r s o n D e r r e k L e e J e r o m y B u r n i t z J e r r y H a i r s t o n J o s e M a c i a s M i c h a e l B a r r e t t N e i f i P e r e z T o d d H o l l a n d s w o r t h T o d d W a l k e r A . J . P i e r z y n s k i A a r o n R o w a n d C a r l E v e r e t t J e r m a i n e D y e J o e C r e d e J u a n U r i b e P a u l K o n e r k o S c o t t P o d s e d n i k T a d a h i t o I g u c h i B o s t o n C h i C u b s C h i S o x 600 550 500 450 400 350 300 250 200 Number of Teams/page 3 Select page 2 Legend Team Team Boston Chi Cubs Chi Sox per Player per Team At Bats

Trellis Simulation ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Number of Teams/page 3 Select page 2 per Player per Team At Bats

Using $map and $csearch *run*

Using $map and $csearch ,[object Object],[object Object],Text Area Y - Axis property search: *run*

Using $map and $csearch ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Comma separated tags column ,[object Object],[object Object],Tags De novo Assembly Genome Annotation, Derivative technology, Multiple Analysis Steps Alignment Alignment Genome Annotation QC Analysis …

Comma separated tags column Detail on single paper 19 columns

Comma separated tags column ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Tag processing Tags Get tag values Mark selected row

Comma separated tags column ,[object Object],from System import Array from Spotfire.Dxp.Data import IndexSet from Spotfire.Dxp.Data import DataValueCursor rowCount = Document.ActiveDataTableReference.RowCount rowsToInclude = IndexSet(rowCount,True) #Create a cursor to the Column we wish to get the values from cursor1 = DataValueCursor.CreateFormatted(Document.ActiveDataTableReference.Columns[ColumnName]) keys=dict() #Loop through all rows, retrieve value for specific column, and add value into array for row in Document.ActiveDataTableReference.GetRows(rowsToInclude,cursor1): value1 = cursor1.CurrentValue for tag in value1.split(', '): keys[tag]=1 strArray = Array.CreateInstance(str,len(keys)) idx=0 for key in keys: strArray[idx] = key idx=idx+1 #Set property to array created above Document.Properties.Item[ListProperty]=strArray Get unique tag values Put in “Tagslist” property Tags Get tag values Mark selected row Script parameters Name Type Value ColumnName String “ ${TagColumn}” ListProperty String TagsList

Comma separated tags column ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],D a t a v o l u m e s A l i g n m e n t / A s s e m b l y V i e w e r s M u l t i p l e A n a l y s i s S t e p s G e n o m e A n n o t a t i o n S N P / D I P D e t e c t i o n D e r i v a t i v e t e c h n o l o g y D e n o v o A s s e m b l y D a t a s t o r a g e A l i g n m e n t T a r g e t e d R e s e q u e n c i n g D a t a i n t e g r a t i o n D a t a r e p r e s e n t a t i o n E r r o r C o r r e c t i o n Q C A n a l y s i s R a w D a t a A n a l y s i s S t r u c t u r a l V a r i a n t s D e t e c t i o n C o p y N u m b e r V a r i a t i o n G e n o t y p e C a l l i n g ( E m p t y ) 14 12 10 8 6 4 2 0 14 12 12 11 9 9 8 8 7 6 6 4 4 3 2 2 1 1 0

Comma separated tags column ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Tag count Data volumes Alignment/Assembly Viewers Multiple Analysis Steps Genome Annotation SNP/DIP Detection Derivative technology De novo Assembly Data storage Alignment Targeted Resequencing Data integration Data representation Error Correction QC Analysis Raw Data Analysis Structural Variants Detection Copy Number Variation Genotype Calling ||||||||||||||(14) ||||||||||||(12) ||||||||||||(12) |||||||||||(11) |||||||||(9) |||||||||(9) ||||||||(8) ||||||||(8) |||||||(7) ||||||(6) ||||||(6) ||||(4) ||||(4) |||(3) ||(2) ||(2) |(1) |(1) Tags Get tag values Mark selected row

Comma separated tags column ,[object Object],from Spotfire.Dxp.Application.Visuals import VisualContent from Spotfire.Dxp.Data import IndexSet from Spotfire.Dxp.Data import RowSelection from Spotfire.Dxp.Data import DataValueCursor vc = vis.As[VisualContent]() dataTable=vc.Data.DataTableReference marking=vc.Data.MarkingReference selectRows = IndexSet(vc.Data.DataTableReference.RowCount, False); if (vc.SortColumnsCategory): selectedTag=vc.SortColumnsCategory.ToString() rowCount = dataTable.RowCount rowsToInclude = IndexSet(rowCount,True) #Create a cursor to the Column we wish to get the values from cursor1 = DataValueCursor.CreateFormatted(dataTable.Columns[TagsColumn]) #Loop through all rows and check for tag idx=0 for row in dataTable.GetRows(rowsToInclude,cursor1): value1 = cursor1.CurrentValue found=False for tag in value1.split(', '): if (tag==selectedTag): found=True break if found: selectRows[idx]=True idx=idx+1 marking.SetSelection(RowSelection(selectRows), dataTable) Get “selected” tag Set marking Find records with “selected” tag Script parameters Name Type Value vis Visualization Tagging>HBar TagsColumn String “ ${TagColumn}”

Expand Marking ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Expand Marking ,[object Object],from Spotfire.Dxp.Application.Visuals import VisualContent vc = vis.As[VisualContent]() dataTable=vc.Data.DataTableReference marking=vc.Data.MarkingReference marking.SetSelection(marking.GetSelection(dataTable),dataTable) Get data table and marking from visualization Re-apply marking Script parameters Name Type Value vis Visualization Page>Table

Dynamic list box content ,[object Object],[object Object],[object Object],Select symbols for list Approve … A1BG A1CF A2LD1 A2M A2ML1 A4GALT A4GNT AAAS AACS AADAC AADACL2 AADACL3 AADACL4 AADAT AAGAB AAK1 Load marked symbols A2LD1 A2M A4GALT AAAS AADAC AADACL3 AADACL4 AADAT AAK1 Cross Table S e l e c t e d G e n e S y m b o l s Selected Gene Symbols Chromosome AAAS AADACL3 (Empty) 12q13 1p36.21

Dynamic list box content ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Dynamic list box content ,[object Object],from Spotfire.Dxp.Data import DataManager,TagsColumn,IndexSet,RowSelection selection=Application.GetService[DataManager]().Markings[markingName].GetSelection(dataTable) col=dataTable.Columns[tagColumn].As[TagsColumn]() # remove tag in tagColumn for all rows in dataTable idx=IndexSet(selection.TotalRowCount,True) col.Tag("",RowSelection(idx)) # tag marked rows in tagColumn with tagValue col.Tag(tagValue,selection) Remove all tags in ‘tagColumn’ Set ‘tagValue’ tag in ‘tagColumn’ for records marked in ‘markingName’ Script parameters Name Type Value dataTable DataTable Data Table markingName String Select Marking tagColumn String SelectedGenes tagValue String Selected

Advanced Use of Properties and Scripts in TIBCO Spotfire

Advanced Use of Properties and Scripts in TIBCO Spotfire

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Advanced Use of Properties and Scripts in TIBCO Spotfire