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GenomeBrowser
- 6. An Interview with Ewan Birney: Keynote Speaker at O’Relly’s Bioinformatics Technology Conference 2001/10
- 16.
•UCSC Human Genome Browser
•50,000 Hit/Day
•3,000 users/Day
•
•1,257 Hit/Day
•10 users/Day
- 25.
•Part of Generic Model Organism Database Project
•Lightweight & portable
•Highly configurable
•Clean user interface
•Promotes data sharing
- 26.
•Find your Favorite Gene
•Find your Favorite Domain
•Find your Favorite Oligo
•Zoom - Low Magnification
•Zoom - Medium Magnification
•Zoom - High Magnification
•Zoom - Highest Magnification
•CustomTracks
- 27.
•End-user
•Turn tracks on and off, change order, change packing & labeling
attributes(stored in cookie)
•Data provider
•Change fonts, colors, text.
•Change overview-genetic map, contigs, coverage, karyotype.
•Define new tracks using simple config file.
•Tinker with track appearance to hearts content.
- 28.
Glyphs
DAS Adaptor
Remote
Source
- 29.
•Add your own tracks
•Add 3d party tracks
•Distributed annotation system support
- 33.
Glyphs
DAS Adaptor
UCSC
Genome
Browser
- 36.
Gbrowse 2
Gbrowse 1 Gbrowse 3
My Gbrowse
- 38.
seqid source type start end score strand phase attribute
Chr1 dbsnp snp 200 300 . + . ID=SNP:rs1234;alleles:G/T
Chr1 dbsnp snp 400 700 . + . ID=SNP:rs4321;alleles:G/T
- 39.
1
2 3 4 5
6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21
A B C
(1,2,3,7,8,9,10,11) (1,4,14,15,16,17) (1,5,20)
- 42. •“One Click” install on Macintosh OSX
•“Three Click” install onWindows XP
•“Tippity-tappity-tap” install on Linux/Solaris/BSD
Unix