9. It has a compact genome
genome size
coding genes
A+T content
20Mb
9000
75%
coding region
60%
retrotransposon
25%
10. It has a compact genome
genome size
coding genes
A+T content
20Mb
9000
75%
intron frequency
0.2
per gene
intergenic distance
150bp
5’UTR and 3’UTR
15bp
28. Stop codon resembles an TSS initiator motif"
on the antisense strand
mRNA TSS
Sequence around
mRNA TSS
n=4186
NAT TSS ???
Reverse complement
of sequence around
stop codon
n=7312
reverse
complement
stop codon
29. Stop codon resembles an TSS initiator motif"
on the antisense strand
Sequence around
mRNA TSS
n=4186
Reverse complement
of sequence around
stop codon
n=7312
initiator motif
79. mRNA with short 3’UTR
average 15nt
AAAAAA
stop codon
T-rich DSE
Initiator motif
A-box
NAT
pervasive
transcription at 3’end
80. Codon bias towards NNA
Enrichment of T-rich
DSE for poly(A)
AAAAAA
NAT transcription is limited to 3’end by
enriched poly(A) site motifs
81. Natural selection for long NAT?
Reduced codon bias towards NNA
Depletion of T-rich DSE for poly(A)
NAT transcription is lengthen
and possibly functional