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Antibodies: Structure And 
Function
Antibody Structure 
• Antibodies Are Made Up Of: 
– 2 Light Chains (identical) ~25 KDa 
– 2 Heavy Chains (identical) ~50 KDa 
• Each Light Chain Bound To Heavy Chain By 
Disulfide (H-L) 
• Heavy Chain Bound to Heavy Chain (H-H) 
• First 100 a/a Of Amino Terminal Vary of Both H 
and L Chain Are Variable 
• Referred To As VL , VH, CH And CL 
• CDR (Complementarity Determining Regions) 
Are What Bind Ag 
• Remaining Regions Are Very Similar Within 
Same Class
Antibody Structure 
• Repeating Domains of ~110 a/a 
– Intrachain disulfide bonds within each domain 
• Heavy chains 
– 1 VH and either 3 or 4 CH (CH1, CH2, CH3, CH4) 
• Light chains 
– 1 VL and 1 CL 
• Hinge Region 
– Rich in proline residues (flexible) 
– Hinge found in IgG, IgA and IgD 
– Proline residues are target for proteolytic digestion (papain and 
pepsin) 
– Rich in cysteine residues (disulfide bonds) 
– IgM and IgE lack hinge region 
– They instead have extra CH4 Domain
Enzymatic Digestion Of Antibodies 
• Digestion With Papain Yields 
– 3 Fragments 
– 2 identical Fab and 1 Fc 
– Fab Because Fragment That is Antigen Binding 
– Fc Because Found To Crystallize In Cold Storage 
• Pepsin Digestion 
– F(ab`)2 
– No Fc Recovery, Digested Entirely 
• Mercaptoethanol Reduction (Eliminates Disulfide 
Bonds) And Alkylation Showed
Sequencing Of Heavy Chains 
• Sequencing Of Several Immunoglobulins Revealed 
– 100-110 Amino Terminus, Highly Variable (V) 
– Five Basic Sequence Patterns 
 a,g, d, e, m 
– IgA, IgG, IgD, IgE and IgM 
– The Above Classes Are Called Isotype 
– Each class can have either k or l light chains 
– Minor Differences Led To Sub-classes For IgA and IgG 
– IgA1, IgGA2 and IgG1, IgG2, IgG3, IgG4
CDR Are Hypevariable
Monoclonal Antibodies 
• Immunize Animal With Antigen 
• Multiple Clones Are Generated, Good For In Vivo 
• For Clinical Diagnosis, Research, One Clone That 
Reacts To Single Epitope Is Preferred 
• Solution By Kohler and Milstein 
– Fuse A Myeloma Cell (Cancerous) With A Normal 
Plasma Cells 
– Resulting Clones Can Be Cultured Indefinitely 
– Produces An Antibody Recognizing One Epitope
B-Cell Receptor 
• BCR Is An Antibody On Surface Of Cell 
mIg 
• Very Short Cytoplasmic Tail, Cannot 
Transduce Signal 
• Heterodimeric Molecule Ig-a/Ig-b 
Transduces (long cytoplasmic tail)
Fc Receptors (FcR)
Fc Receptors (FcR) Functions 
• To Transport Abs Across Membranes 
– Secretion of IgA Across Epithelium into lumen 
– Transport of maternal Abs Across Placenta (IgG) 
• Many Cell Types Use FcR 
– Ex. Mast Cells, Macrophages, Neutrophils, B, T, NK 
• Opsonization, ADCC 
• Poly IgR 
– Transport of IgA across epithelium 
• FcRN 
– Transport of maternal IgG to fetus
Antibody Classes And Biological Activities 
• IgG 
– Most abundant immunoglobin 80% of serum Ig 
– ~10mg/mL 
– IgG1,2,3,4 (decreasing serum concentration) 
– IgG1, IgG3 and IgG4 cross placenta 
– IgG3 Most effective complement activator 
– IgG1 and IgG3 High affinity for FcR on 
phagocytic cells, good for opsonization
Antibody Classes And Biological 
• IgM 
Activities 
– 5-10% of serum immunoglobulin 
– 1.5mg/mL 
– mIgM (also IgD) expressed on B-cells as BCR 
– Pentameric version is secreted 
– First Ig of primary immune response 
– High valence Ig (10 theoretical), 5 empirical 
– More efficient than IgG in complement activation
Antibody Classes And Biological 
Activities 
• IgA 
– 10-15% of serum IgG 
– Predominant Ig in secretions 
• Milk, saliva, tears, mucus 
– 5-15 g of IgA released in secretions!!!! 
– Serum mainly monomeric, polymers possible 
not common though 
– Secretions, as dimer or tetramer+J-chain 
polyptetide+secretory component (Poly IgR)
IgA Antibody Transport Across Cell 
(Transcytosis)
Antibody Classes And Biological 
Activities 
• IgE 
– Very low serum concentration, 0.3mg/mL 
– Participate in immediate hypersensitivities 
reations. Ex. Asthma, anaphylaxis, hives 
• Binds Mast Cells and Blood Basophils thru 
FceR 
• Binding causes degranulation (Histamine 
Release)
Antibody Classes And Biological 
Activities 
• IgD 
– Expressed on B-cell Surface 
• IgM and IgD, Expressed on B-cell Surface 
• We Do Not Know Any Other Biological 
Effector Activity 
• Low serum concentrations, ~30mg/mL
Cross-Linkage of Bound IgE Antibody 
With Allergen Causes
Antibodies Act As Immunogens 
• Antigenic Determinants on Abs Fall in 3 
Categories 
– Isotypic 
– Allotypic 
– Idiotypic 
• Isotypic 
– Constant Region Of Ab 
– If you inject Ab in a different species Anti- 
Isotype is generated 
– If within same species, No Anti-isotype
Antibodies Act As Immunogens 
• Allotype 
– Even though same isotypes within one species 
small differences (1-4 a/a) arise in different 
individuals (form of polymorphism) 
– If injected with such Ab you generate anti-allotype 
Ab 
• Ex. During pregnancy 
• Blood transfusion
Antibodies Act As Immunogens 
• Idiotype 
– Unique VH AND VL binds antigen but can also behave 
as antigenic determinant 
• If you inject a monoclonal antibody into a 
genetically identical recipient then anti-idiotypic 
antibodies are generated 
• No anti-isotypic and no anti-allotypic Abs will be 
generated
Monoclonal Antibody 
Applications 
• Diagnostic Tests 
– Abs are capable to detect tiny amouns (pg/mL) of 
molecules 
– Ex. Pregnancy hormones 
• Diagnostic Imaging 
– mAbs that recognize tumor antigens are radiolabeled 
with iodine I-131 
• Immunotoxins 
– mAbs conjugated with toxins 
• mAbs To Clear Pathogens 
– www.elusys.com

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Antibodies chpt 4

  • 2.
  • 3. Antibody Structure • Antibodies Are Made Up Of: – 2 Light Chains (identical) ~25 KDa – 2 Heavy Chains (identical) ~50 KDa • Each Light Chain Bound To Heavy Chain By Disulfide (H-L) • Heavy Chain Bound to Heavy Chain (H-H) • First 100 a/a Of Amino Terminal Vary of Both H and L Chain Are Variable • Referred To As VL , VH, CH And CL • CDR (Complementarity Determining Regions) Are What Bind Ag • Remaining Regions Are Very Similar Within Same Class
  • 4.
  • 5. Antibody Structure • Repeating Domains of ~110 a/a – Intrachain disulfide bonds within each domain • Heavy chains – 1 VH and either 3 or 4 CH (CH1, CH2, CH3, CH4) • Light chains – 1 VL and 1 CL • Hinge Region – Rich in proline residues (flexible) – Hinge found in IgG, IgA and IgD – Proline residues are target for proteolytic digestion (papain and pepsin) – Rich in cysteine residues (disulfide bonds) – IgM and IgE lack hinge region – They instead have extra CH4 Domain
  • 6.
  • 7. Enzymatic Digestion Of Antibodies • Digestion With Papain Yields – 3 Fragments – 2 identical Fab and 1 Fc – Fab Because Fragment That is Antigen Binding – Fc Because Found To Crystallize In Cold Storage • Pepsin Digestion – F(ab`)2 – No Fc Recovery, Digested Entirely • Mercaptoethanol Reduction (Eliminates Disulfide Bonds) And Alkylation Showed
  • 8. Sequencing Of Heavy Chains • Sequencing Of Several Immunoglobulins Revealed – 100-110 Amino Terminus, Highly Variable (V) – Five Basic Sequence Patterns a,g, d, e, m – IgA, IgG, IgD, IgE and IgM – The Above Classes Are Called Isotype – Each class can have either k or l light chains – Minor Differences Led To Sub-classes For IgA and IgG – IgA1, IgGA2 and IgG1, IgG2, IgG3, IgG4
  • 10.
  • 11. Monoclonal Antibodies • Immunize Animal With Antigen • Multiple Clones Are Generated, Good For In Vivo • For Clinical Diagnosis, Research, One Clone That Reacts To Single Epitope Is Preferred • Solution By Kohler and Milstein – Fuse A Myeloma Cell (Cancerous) With A Normal Plasma Cells – Resulting Clones Can Be Cultured Indefinitely – Produces An Antibody Recognizing One Epitope
  • 12. B-Cell Receptor • BCR Is An Antibody On Surface Of Cell mIg • Very Short Cytoplasmic Tail, Cannot Transduce Signal • Heterodimeric Molecule Ig-a/Ig-b Transduces (long cytoplasmic tail)
  • 13.
  • 15. Fc Receptors (FcR) Functions • To Transport Abs Across Membranes – Secretion of IgA Across Epithelium into lumen – Transport of maternal Abs Across Placenta (IgG) • Many Cell Types Use FcR – Ex. Mast Cells, Macrophages, Neutrophils, B, T, NK • Opsonization, ADCC • Poly IgR – Transport of IgA across epithelium • FcRN – Transport of maternal IgG to fetus
  • 16. Antibody Classes And Biological Activities • IgG – Most abundant immunoglobin 80% of serum Ig – ~10mg/mL – IgG1,2,3,4 (decreasing serum concentration) – IgG1, IgG3 and IgG4 cross placenta – IgG3 Most effective complement activator – IgG1 and IgG3 High affinity for FcR on phagocytic cells, good for opsonization
  • 17. Antibody Classes And Biological • IgM Activities – 5-10% of serum immunoglobulin – 1.5mg/mL – mIgM (also IgD) expressed on B-cells as BCR – Pentameric version is secreted – First Ig of primary immune response – High valence Ig (10 theoretical), 5 empirical – More efficient than IgG in complement activation
  • 18. Antibody Classes And Biological Activities • IgA – 10-15% of serum IgG – Predominant Ig in secretions • Milk, saliva, tears, mucus – 5-15 g of IgA released in secretions!!!! – Serum mainly monomeric, polymers possible not common though – Secretions, as dimer or tetramer+J-chain polyptetide+secretory component (Poly IgR)
  • 19. IgA Antibody Transport Across Cell (Transcytosis)
  • 20. Antibody Classes And Biological Activities • IgE – Very low serum concentration, 0.3mg/mL – Participate in immediate hypersensitivities reations. Ex. Asthma, anaphylaxis, hives • Binds Mast Cells and Blood Basophils thru FceR • Binding causes degranulation (Histamine Release)
  • 21. Antibody Classes And Biological Activities • IgD – Expressed on B-cell Surface • IgM and IgD, Expressed on B-cell Surface • We Do Not Know Any Other Biological Effector Activity • Low serum concentrations, ~30mg/mL
  • 22. Cross-Linkage of Bound IgE Antibody With Allergen Causes
  • 23. Antibodies Act As Immunogens • Antigenic Determinants on Abs Fall in 3 Categories – Isotypic – Allotypic – Idiotypic • Isotypic – Constant Region Of Ab – If you inject Ab in a different species Anti- Isotype is generated – If within same species, No Anti-isotype
  • 24. Antibodies Act As Immunogens • Allotype – Even though same isotypes within one species small differences (1-4 a/a) arise in different individuals (form of polymorphism) – If injected with such Ab you generate anti-allotype Ab • Ex. During pregnancy • Blood transfusion
  • 25. Antibodies Act As Immunogens • Idiotype – Unique VH AND VL binds antigen but can also behave as antigenic determinant • If you inject a monoclonal antibody into a genetically identical recipient then anti-idiotypic antibodies are generated • No anti-isotypic and no anti-allotypic Abs will be generated
  • 26.
  • 27. Monoclonal Antibody Applications • Diagnostic Tests – Abs are capable to detect tiny amouns (pg/mL) of molecules – Ex. Pregnancy hormones • Diagnostic Imaging – mAbs that recognize tumor antigens are radiolabeled with iodine I-131 • Immunotoxins – mAbs conjugated with toxins • mAbs To Clear Pathogens – www.elusys.com