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CURRICULUM VITAE




Personal notes

Name                        Marco Berzano

Date and place of birth     09.07.1975   Turin (Italy)

Address100 Moyglare Village, Maynooth, Co. Kildare - Ireland

Spoken languages           Italian (mother tongue)/English (advanced level)

Education

1989-1994                  Attend LiceoScientifico (High School), graduating with
                           “Diploma di MaturitàScientifica” on July 1994 (mark:
                           42/60)
1994-2002                 Attend the University Course in Biological Sciences at the
                          University of Camerino; Graduation on 19 December 2002
                          presenting a thesis titled: “Approccio alla costruzione di un
                          Microarray molecolare per l’identificazione di Diatomee
                          presenti nelle acque dolci”
                          (Mark: 110 with laude).
2001
                          Six months as ERASMUS exchange student in Northern
                          Ireland (UK) at the University of Ulster -Coleraine-
                          working with Prof. R.Marchant and Prof. Ibrahim Banat –
                          Dip. School of Biological and Environmental Sciences. The
                          main topic of the project concerned the study of
                          hyperthermophilic bacteria in soil (for more details see the
                          list of publications). In addition, three exams in clinical
                          microbiology were successfully undertaken.

2003-2006

                          May 2003, started the PhD in the laboratory of Prof.
                          C.O.Gualerzi at the University of Camerino working on the
                          EU Project “MICROPAD- “Microarrays for the detection of
                          the adundance and distribution of Pathogenic Protozoa,
                          Flagellated Algae and Diatoms”.
                          On 08/09/2006 PhD dissertation and proclamation. PhD
                          title: “MOLECULAR TOOLS AND FRESHWATER DIATOMS, A
                          NOVEL APPROACH TO IDENTIFY TARGET SPECIES TO
                          ASSESS WATER QUALITY IN AQUATIC HABITAT”.
Professional experiences

1993-1994           Worked at the Cuneo Golf Club (Cuneo, Italy) as caddy and
                    “starter” during official competitions.

1995-2002           Tour leader for a travel agency (TR Viaggi, Treia –MC-,
                    Italy). I have worked for a local travel agency leading
                    groups throughout Europe

2002                Worked six months as secretary of the EU project
                    MICROPAD, planning the design of the website setting up
                    graphics and databases, writing scientific reports and
                    maintaining  communication    within    the   European
                    partnership.


2003                Practical work on microarrays concerning the EU project
                    MICROPAD under the supervision of Dr G.Muyzer and Dr
                    C.Meyer at the TU-Delft, Department of Microbiology, NL.
                    Performed research at the AWI for Marine and Polar
                    Research-Bremerhaven-Germany under the supervision of
                    Dr L.K.Medlin.

2004-2005           Senior tutor at the University of Macerata, eLearning Hons
                    degree for prospective teachers in primary school. In
                    charge of two courses (Animal Biology, Environmental
                    Biology) and two laboratories (Laboratory of Animal Biology
                    and laboratory of Environmental Biology).

2005-2008           Senior tutor on-line at the University of Macerata, as
                    mentioned for 2004. In charge of 9 courses (Animal
                    Biology, Environmental Biology 1 and 2, Evolutionary
                    Biology, Genaral and Human Biology, Biology of humans
                    with elements of Genetics, Laboratory of Environmental
                    Biology and Laboratory of Maths and Science).

                    Scientific consultant for an industrial patent in collaboration
                    with a small enterprise (ORIM MetalliS.p.a, Macerata -
                    Italy).

2006                Local organizer of the workshop “Detection of Microbial
                    Biodiversity in Environmental Samples - A Molecular
                    EcologyWorkshop”. University of Camerino, Italy, 19-21
                    September 2005

2006
                    Research assistant (8 months) at the University of
                    Camerino (prof. C.O.Gualerzi) working on freshwater
                    diatoms and water quality assessment using phylochip
                    technology.


2007
01/01/2007
31/12/2008
                    Marie Curie Post-Doctoral Position at the University Collage
                    of Dublin, Ireland. Work is based at the Central Veterinary
                    Research Laboratory, Dept. Agriculture, Fisheries and Food,
                    Co. Kildare. This position supervised byProf. N.Holdenin
                    relation to the FP6 EU funded project Cryptonet.ie. The
scientific objective of the project was to develop a
                           Cryptosporidium specific Microbial Risk Assessment (MRA)
                           model for catchment waters that could be used to identify
                           when potable water was at high risk of being contaminated.

2008                       Reviewer for “Journal of Plankton Research”

2009-2010

’09 April – ’10 November   Postdoctoral researcher at the Westminster University,
                           London working with Prof. Jane Lewis on the EU funded
                           project MIDTAL (FP7) which aims to develop a universal
                           microarray chip for the identification of toxic algae
                           (HABs).Microarrays development, validation of sampling
                           protocols and RNA quality tests, reporting and workshop
                           organizer.
2009- ongoing
                           Laboratory analyst at the Department of Agriculture, Food
                           and the Marine, Bacteriology/Parasitology Division.Samples
                           processing and development of novel molecular protocols
                           for the analysis of microbial pathogens and animal
                           parasites.Quality internal auditor for the National reference
                           laboratories.




Higher Educational training


2001-2002                  Final year project (to complete the Ms Degree in Biological
                           Sciences) carried out at the Dip. of Biology MCA Lab. of
                           Genetics under the supervision of Prof. C.O. Gualerzi and
                           Dr R. Spurio a project concerning the development of
                           nucleotide probes for the identification of diatoms as
                           bioindicators.

2002

March                      Attended the “basic course in microarray data analysis and
                           mining” held by Prof. RaffaeleCalogero, Univeristy of Turin,
                           Torino, Italy.


February                   Attended the practical Course of the ARB package, basic
                           level, (www.arb-home.de) at MPI in Bremen for molecular
                           probe design and phylogenetic studies

April                      Attended Workshop “ASCMAP–Analysis of Single Cells in
                           Marine Phytoplancton”: 15-21 April.

June 27 – July 04          Attended the practical course “Bioinformatics: computer
                           Methods in Molecular Biology” at the ICEGB in Trieste
                           (http://www.icgeb.trieste.it/)

2004
September- November   Specialization course for On-line tutors, or E-tutors for
                      distance learning environments at the University of
                      Macerata. Final examination passed, qualified E-tutor.

July                  Attended the practical Course of the ARB package,
                      advanced level, (www.arb-home.de) at MPI in Bremen for
                      molecular probe design and phylogenetic studies

September             Attended the practical course “Basics in Bioinformatics” at
                      the ISS (IstitutoSuperiore di Sanità, Rome), focused on
                      Phylogenetic tools, like Paup, and GCG.

2005

June                  EMBO practical course “Microarray Technology:           From
                      Production to Applications” in Heidelberg

September             Local organizer of the Molecular Ecology Workshop:
                      “Detection of Microbial Biodiversity in Environmental
                      Samples”, Camerino (MC), Italy.


2007                  Advanced Training at the TATAA Biocentre (Prague, CZ) for
                      real time qPCR [Core module (3 days) and Biostatistics (2
                      days)]

2009                  Diversity program and health&safety tests          as   new
                      appointee at the University of Westminster.

2010                  Internal QMS Auditor Training




Teaching and supervising experiences

2003-2006             Supporting lecturer for the course of Dr A.Laterza
                      (Molecular Ecology) and for Dr A.Concetti (Applied
                      Biochemistry) respectively in the Ms course in Biotecnology
                      and CTF (Pharmaceutical and Chemical Thechnologies) at
                      the University of Camerino. Lectures covered different
                      topics of Bioinformatics, including the ARB package
                      software. Students had practical experience on informatics
                      tools available for applied research in molecular biology.

2003-2006             Supervisor of a technician and an undergraduate student at
                      the Department of Biology MCA (lab. Genetics), University
                      of Camerino. Main duties concerned training in Molecular
                      Biology and Microbiology techniques besides the safety
                      prcedure of working in a laboratory.

2007-2008             Supervisor of 2 PhD students and transfer of knowledge for
                      for the molecular biology techniques within the EU project
                      Cryptonet.ie (CVRL –Dep. Agriculture, Fishery and Food-
                      and UCD, Dublin).
                      Co-supervisor of a PhD student at the University of
                      Camerino (Mai Nguyien).
                      Supervisor of Ms student working on the development of
                      molecular tools for the detection of Anisakis spp. in fish

2009                  Different roles covered at the University of Westminster:
- Supporting staff for CELL SCIENCE MODULE: 3SBS474.Y.
                            Main responsabilities include running tutorials, practicals
                            and marking of working assays.

                            Course developer of Cell Science module FBMS405 for
                            distance learning students (blended course starting on
                            September 2010).

                            Supporting lecturer for module 3BLY614.Y MOLECULAR
                            BIOLOGY & DISEASE DIAGNOSIS and MOLECULAR
                            APPLICATIONS IN FORENSIC SCIENCE 3BLY619.

2010
                            Supervisor of one MSc student in collaboration with the
                            Dublin Institute of Technology.


Additional skills(include techiniques and instruments used)

I have always worked as part of a team and I strongly believe that unambiguous roles
mixed with a bit of enthusiasm represent the synergy that permits the achievement of
good results other than a pleasant working environment. I am familiar with active
listening and problem solving techniques that have been helping me in work
environment toward difficulties and relationships with colleagues and customers. While
I am working I am always extremely precise and meticulous my good organizational
skills and experience I can be pragmatic when the circumstances require that such as
strict dead lines or difficult situations. I think of myself as an energetic person who has
a focus on a solutions approach to problems and a “can do” attitude.

   High level of knowledge on Macintosh and Windows platform, basic on Unix
   systems.
   Microsoft Office, Adobe Photoshop, database designing (Access).
   Software for bioinformatics analysis: DNAstar®, MrBayes, Paup, ARB package,
   GenEx (MultiID) and other software for sequence editing and phylogenetic studies.
   Good knowledge in bacterial microbiology and microbiology techniques, including
   isolation of new bacterial strains
   SEM and TEM microscopy techniques as well as Fluorescence microscopy
   PCR based techniques, both standard and in real time (qPCR, RT-PCR), Radioactive
   labelling techniques, DNA sequencing, Microarray technology, Molecular cloning,
   Slot/Dot-Blot analysis, RFLP.
   DNA sequencing and fragment typing
   Diatom culturing and isolation techniques
   Identification of pathogenic protozoa such as Cryptosporidumspp. and Giardia
   (molecular typing)
   Identification of parasite such as Anisakis spp., Alariaalatausing molecular tools
   Identification of common zoonotic parasite (Microscopy-based)
   Working experience under the ISO 17025
   Experience in Quality Auditing within the National Reference Laboratory (CVRL)
List of publications

  1. T.M. Murphy, J. O’Connell, M. Berzano, C. Dold, J.D. Keegan, A. McCann,
     D. Murphy, N.M. Holden The prevalence and distribution of Alariaalata, a
     potential zoonotic parasite, in foxes in Ireland (acceptedby Parasitology
     Research, December 2011)

  2. De Waele, V., Berzano, M., Speybroeck, N., Berkvens, Mulcahy, G.M.,
     Murphy, T.M.Peri-parturient rise of Cryptosporidium oocysts in cows: new
     insights provided by duplex quantitative real-time PCR. (accepted by Veterinary
     Parasitology, Jan 2012)

  3. Stephen McDonald, Marco Berzano, Peter Ziegler, Thomas M. Murphy &
     Nicholas M. HoldenQualitative Risk Assessment of Surface Water
     Contamination with Cryptosporidium spp. Oocysts: A Case Study of Three
     Agricultural Catchments. Human and Ecological Risk Assessment: An
     International  Journal,Volume    17, Issue   4,   2011   -pages   813-
     825DOI:10.1080/10807039.2011.588148

  4. De Waele V, Berzano M, Mulchy G and Murphy T M. Age-stratified Bayesian
     analysis to estimate sensitivity and specificity of four diagnostic tests detecting
     Cryptosporidium spp. oocysts in calves.J ClinMicrobiol. 2011 Jan;49(1):76-84.
     Epub 2010 Nov 3

  5. Nguyen M, Berzano M, Gualerzi C.O, Spurio R, Development of molecular
     tools for the detection of freshwater diatomsJournal of Microbiological Methods.
     2011 Jan;84(1):33-40. Epub 2010 Oct 16.

  6. Murphy TM, Berzano M, O'Keeffe SM, Cotter DM, McEvoy SE, Thomas KA,
     O'Maoileidigh NP, Whelan KF.Anisakid larvae in Atlantic salmon (Salmosalar
     L) grilse and post smolts: molecular identification and histopathology.J
     Parasitology. 2009 Sep 13:1.

  7. Metfies K, Berzano M, Mayer C, Roosken P, Gualerzi CO, Medlin L and Muyzer
     G.An optimized protocol for the identification of diatoms, flagellated algae and
     pathogenic protozoa with phylochipsMolecular Ecology Notes 7 (6) 2007, 925–
     936.

  8. Metfies K, Berzano M, Gualerzi C, Muyzer G and Medlin L,Meeting Report:
     Molecular Ecology Workshop. Detection of Microbial Biodiversity in
     Environmental Samples, Camerino, Italy, September 19–21, 2005Protist. 2006
     Aug;157(3):247-50. Epub 2006 Jun 23

  9. Marchant R, Banat IM, Rahman TJ, Berzano M. The frequency and
     characteristics of highly thermophilic bacteria in cool soil environments. Environ
     Microbiol. 4:595-602 (2002)

  10.Marchant R, Banat IM, Rahman TJ, Berzano M. What are high-temperature
     bacteria doing in cold environments?Trends Microbiol. 10:120-1(2002)
Papers in preparation:

   1.
   2. Berzano M, McDonald S, Holden N, Murphy T M. Cryptosporidium parvum in
      wild deers, a reported case in Ireland.(Short communication in preparation)
   3. McDonald S, Berzano M, Murphy T M, Holden N. Cryptosporidium in the
      background: analysis of in a river catchment showing no signs of clinical
      infection. (In preparation)
   4. Berzano M, McDonald S, Ziegler P, Holden N, Murphy T M. Hands in slurry:
      comparative analysis to evaluate DNA extraction procedures for the
      identification of Cryptosporidium spp. (in preparation)
   5. Berzano M, Marcheggiani S, Rombini S, Gualerzi CO, Spurio RThe
      application of oligonucleotide probes and microarrays for the identification of
      freshwater diatoms. (accepted:Hidrobiologia, special issue)
   6. Joe Taylor, Marco Berzano, Linda Percy, Jane Lewis and Linda K. Medlin
      Preliminary results of testing of the MIDTAL microarray- chip to monitor toxic
      dinoflagellates in the Orkney Islands, UK (submitted on January 2012 to The
      Journal of Micropalaeontology)




Grant applications


September 2001            Contribution to the proposal for the EU project MICROPAD,
                          funded by the European Commission under the FP5
                          programme. The European Commission successfully funded
                          the project
                          (QLK3-CT-2002-01939,
                          http://cordis.europa.eu/data/PROJ_FP5/ACTIONeqDndSESS
                          IONeq112482005919ndDOCeq1743ndTBLeqEN_PROJ.htm)


January 2008              Application submitted to the EPA-Ireland for a 3 years
                          project called PATHOWASTE: Risk assessment of waste and
                          drinking water plants for Cryptosporidium and Giardia
                          species. Shortlisted but not funded for lack of fundings.

April 2008                Application submitted to the EPA-Ireland for a 3 years
                          fellowship to carry on a project titled: Monitoring
                          environmental samples for zoonotic pathogens using
                          microarray technology and qPCR. Evaluation: >70%;
                          shortlisted but not funded for lack of fundings.

January 2009              Contribution to the preparation of the FP7 project called
                          “μAQUA. MicroArrays for Water Quality Assessment under
                          Current and Future Climates”. The project involves 12
                          different partners from several EU countries. The project is
                          funded and it started on February 2011.
                          http://microaqua.eu/project




Poster and oral presentations

Since I was an undergraduate student I have presented oral and poster
communications at national and international conferences and I have experiences
presenting confidently my research in front of a large audience. Presentations are often
appreciated for being clear and direct and my communicating skills are supported by a
solid knowledge on computer graphics, in particular in the use of software such as
Photoshop® or Powerpoint.

2003

May 29-30                   S.Benedetto (AP), Italy, annual meeting “Marine and
                            environmental biochemistry, SIMBA2003”

2004

April                       Cortona 2004, Annual meeting of the Italian Genetic
                            Society. Oral presentation: “La biodiversità delle diatomee
                            quale possibile strumento per l’analisi della qualità delle
                            acque”.

September                   18th International Diatom Symposium 2004, poster title:
                            “The EU project micropad: microarrays for the detection of
                            protozoa, algae and diatoms. Medlin, L.K., Metfies, K.,
                            Muyzer, G., Mayer, C., Berzano, M., Spurio, R. & Gualerzi,
                            C.”
30 September-3 October      Riva del Garda, FISV (FederazioneItalianaScienzedella
                            Vita), poster presentation: “Molecular tools for identification
                            of diatoms in freshwaters: alternative strategies for the
                            development of species-specific oligonucleotide probes”.

2005

April                      Oral presentation at the II Simposio sulle Tecnologie
                           Avanzate: Applicazioni delle nanotecnologie per la difesa nei
                           settori   strutturale,  elettronico,    biotecnologico,   “La
                           tecnologia dei microarray applicata alle diatomee, un nuovo
                           approccio per la valutazione qualitative delle acque
                           superficiali”   M.Berzano,    S.Rombini,      S.Marcheggiani,
                           R.Spurio, C.O.Gualerzi

August                     Oral presentation at the International Phycological Congress
                           in Durban (South Africa) “Microarrays and freshwater
                           diatoms, a novel approach to identify target species to
                           assess water quality in aquatic habitats”.

September                  Oral presentation at the Molecular Ecology Workshop:
                           “Microarrays and freshwater diatoms, a novel approach to
                           identify target species to assess water quality in aquatic
                           habitats”, 19-21 September, Camerino (MC), Italy

2007

May 13-17                   International Giardia and Cryptosporidium conference in
                            Morelia (Mexico). Poster: Towards the development of an
                            environmental risk assessment model for cryptosporidiosis.

October 31                  Invited speaker at the Worshop: Cryptosporidium and other
                            protozoan enteric pathogens in the Irish Aquatic
                            Environment– Sources, Reservoirs and Public Health
                            Implications. Institute of Technology, Sligo -Ireland
Conferences

2002

July 21-26      Attended the EPC3 “Third European Phycological Congress”
                in Belfast

2005

August          International Phycological Congress in Durban       (South
                Africa). Invited speaker for an oral presentation

September       Molecular Ecology Workshop held in Camerino, Italy (local
                organizer). Invited speaker, oral and poster presentation.

2007

May 13-17       II International Giardia and Cryptosporidium conference in
                Morelia (Mexico). Poster presentation.

2009

October 11-15   III International Giardia and Cryptosporidium conference
                (Orvieto). 3 Posters presentation and the oral talk “Hands
                in slurry: comparative analysis to evaluate DNA extraction
                procedures for the identification of Cryptosporidium spp.
                from agricultural slurry”.
References could be obtained from:



- Prof. N.M. Holden
Bioresources Research Centre / Biosystems Engineering
UCD School of Agriculture, Food Science and Veterinary Medicine- Agriculture and Food
Science Centre- University College Dublin- Belfield
Dublin 4, IRELAND

                           Tel:          +353 1 7167460
                           Fax:          +353 1 7167415
                           Email:        nick.holden@ucd.ie

- Dr T. Murphy
Department of Agriculture, Fishery and Food, Backweston              Campus,     CVRL
(Parasitology), Stacumny Lane, Celbridge –Co. Kildare, Ireland

                           Tel:          +353 1 6157141
                           Email:        tom.murphy@agriculture.gov.ie

- Prof. C.O.Gualerzi (PhD Supervisor),
Lab. Biologia Molecolare e Biotecnologie Microbiche, Dipartimento di Biologia M.C.A. –
University of Camerino, Via Gentile III da Varano, 62032 CAMERINO (MC) - Italy
                telephone:
                            work           +390737403240
                            work fax       +390737636216
                            email:         claudio.gualerzi@unicam.it

- Dr Gerard Muyzer
Professor in Microbial Systems Ecology, Dept. of Aquatic Microbiology (AMB)
Institute for Biodiversity and Ecosystem Dynamics (IBED)
University of Amsterdam (UvA)
Post address: P.O. Box 94248
1090 GE Amsterdam ,The Netherlands
                              Phone: +31-20-525-6948
                              Fax: +31-20-525-7832
                              E-mail: g.muijzer@uva.nl
                              Website: http://www.science.uva.nl/ibed/home.cfm

- Prof. Linda K.Medlin
ObservatoireOcéanologique de Banyuls-sur-mer, LaboratoireArago,
66651 Banyuls-sur-mer, France

Telephone:
                           Work          +33-430192400
                           email:        medlin@obs-banyuls.fr
                           home page     http://www.awi.de/en/go/molecular_genetics

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Curriculum Vitae Jan 2012

  • 1. CURRICULUM VITAE Personal notes Name Marco Berzano Date and place of birth 09.07.1975 Turin (Italy) Address100 Moyglare Village, Maynooth, Co. Kildare - Ireland Spoken languages Italian (mother tongue)/English (advanced level) Education 1989-1994 Attend LiceoScientifico (High School), graduating with “Diploma di MaturitàScientifica” on July 1994 (mark: 42/60) 1994-2002 Attend the University Course in Biological Sciences at the University of Camerino; Graduation on 19 December 2002 presenting a thesis titled: “Approccio alla costruzione di un Microarray molecolare per l’identificazione di Diatomee presenti nelle acque dolci” (Mark: 110 with laude). 2001 Six months as ERASMUS exchange student in Northern Ireland (UK) at the University of Ulster -Coleraine- working with Prof. R.Marchant and Prof. Ibrahim Banat – Dip. School of Biological and Environmental Sciences. The main topic of the project concerned the study of hyperthermophilic bacteria in soil (for more details see the list of publications). In addition, three exams in clinical microbiology were successfully undertaken. 2003-2006 May 2003, started the PhD in the laboratory of Prof. C.O.Gualerzi at the University of Camerino working on the EU Project “MICROPAD- “Microarrays for the detection of the adundance and distribution of Pathogenic Protozoa, Flagellated Algae and Diatoms”. On 08/09/2006 PhD dissertation and proclamation. PhD title: “MOLECULAR TOOLS AND FRESHWATER DIATOMS, A NOVEL APPROACH TO IDENTIFY TARGET SPECIES TO ASSESS WATER QUALITY IN AQUATIC HABITAT”.
  • 2. Professional experiences 1993-1994 Worked at the Cuneo Golf Club (Cuneo, Italy) as caddy and “starter” during official competitions. 1995-2002 Tour leader for a travel agency (TR Viaggi, Treia –MC-, Italy). I have worked for a local travel agency leading groups throughout Europe 2002 Worked six months as secretary of the EU project MICROPAD, planning the design of the website setting up graphics and databases, writing scientific reports and maintaining communication within the European partnership. 2003 Practical work on microarrays concerning the EU project MICROPAD under the supervision of Dr G.Muyzer and Dr C.Meyer at the TU-Delft, Department of Microbiology, NL. Performed research at the AWI for Marine and Polar Research-Bremerhaven-Germany under the supervision of Dr L.K.Medlin. 2004-2005 Senior tutor at the University of Macerata, eLearning Hons degree for prospective teachers in primary school. In charge of two courses (Animal Biology, Environmental Biology) and two laboratories (Laboratory of Animal Biology and laboratory of Environmental Biology). 2005-2008 Senior tutor on-line at the University of Macerata, as mentioned for 2004. In charge of 9 courses (Animal Biology, Environmental Biology 1 and 2, Evolutionary Biology, Genaral and Human Biology, Biology of humans with elements of Genetics, Laboratory of Environmental Biology and Laboratory of Maths and Science). Scientific consultant for an industrial patent in collaboration with a small enterprise (ORIM MetalliS.p.a, Macerata - Italy). 2006 Local organizer of the workshop “Detection of Microbial Biodiversity in Environmental Samples - A Molecular EcologyWorkshop”. University of Camerino, Italy, 19-21 September 2005 2006 Research assistant (8 months) at the University of Camerino (prof. C.O.Gualerzi) working on freshwater diatoms and water quality assessment using phylochip technology. 2007 01/01/2007 31/12/2008 Marie Curie Post-Doctoral Position at the University Collage of Dublin, Ireland. Work is based at the Central Veterinary Research Laboratory, Dept. Agriculture, Fisheries and Food, Co. Kildare. This position supervised byProf. N.Holdenin relation to the FP6 EU funded project Cryptonet.ie. The
  • 3. scientific objective of the project was to develop a Cryptosporidium specific Microbial Risk Assessment (MRA) model for catchment waters that could be used to identify when potable water was at high risk of being contaminated. 2008 Reviewer for “Journal of Plankton Research” 2009-2010 ’09 April – ’10 November Postdoctoral researcher at the Westminster University, London working with Prof. Jane Lewis on the EU funded project MIDTAL (FP7) which aims to develop a universal microarray chip for the identification of toxic algae (HABs).Microarrays development, validation of sampling protocols and RNA quality tests, reporting and workshop organizer. 2009- ongoing Laboratory analyst at the Department of Agriculture, Food and the Marine, Bacteriology/Parasitology Division.Samples processing and development of novel molecular protocols for the analysis of microbial pathogens and animal parasites.Quality internal auditor for the National reference laboratories. Higher Educational training 2001-2002 Final year project (to complete the Ms Degree in Biological Sciences) carried out at the Dip. of Biology MCA Lab. of Genetics under the supervision of Prof. C.O. Gualerzi and Dr R. Spurio a project concerning the development of nucleotide probes for the identification of diatoms as bioindicators. 2002 March Attended the “basic course in microarray data analysis and mining” held by Prof. RaffaeleCalogero, Univeristy of Turin, Torino, Italy. February Attended the practical Course of the ARB package, basic level, (www.arb-home.de) at MPI in Bremen for molecular probe design and phylogenetic studies April Attended Workshop “ASCMAP–Analysis of Single Cells in Marine Phytoplancton”: 15-21 April. June 27 – July 04 Attended the practical course “Bioinformatics: computer Methods in Molecular Biology” at the ICEGB in Trieste (http://www.icgeb.trieste.it/) 2004
  • 4. September- November Specialization course for On-line tutors, or E-tutors for distance learning environments at the University of Macerata. Final examination passed, qualified E-tutor. July Attended the practical Course of the ARB package, advanced level, (www.arb-home.de) at MPI in Bremen for molecular probe design and phylogenetic studies September Attended the practical course “Basics in Bioinformatics” at the ISS (IstitutoSuperiore di Sanità, Rome), focused on Phylogenetic tools, like Paup, and GCG. 2005 June EMBO practical course “Microarray Technology: From Production to Applications” in Heidelberg September Local organizer of the Molecular Ecology Workshop: “Detection of Microbial Biodiversity in Environmental Samples”, Camerino (MC), Italy. 2007 Advanced Training at the TATAA Biocentre (Prague, CZ) for real time qPCR [Core module (3 days) and Biostatistics (2 days)] 2009 Diversity program and health&safety tests as new appointee at the University of Westminster. 2010 Internal QMS Auditor Training Teaching and supervising experiences 2003-2006 Supporting lecturer for the course of Dr A.Laterza (Molecular Ecology) and for Dr A.Concetti (Applied Biochemistry) respectively in the Ms course in Biotecnology and CTF (Pharmaceutical and Chemical Thechnologies) at the University of Camerino. Lectures covered different topics of Bioinformatics, including the ARB package software. Students had practical experience on informatics tools available for applied research in molecular biology. 2003-2006 Supervisor of a technician and an undergraduate student at the Department of Biology MCA (lab. Genetics), University of Camerino. Main duties concerned training in Molecular Biology and Microbiology techniques besides the safety prcedure of working in a laboratory. 2007-2008 Supervisor of 2 PhD students and transfer of knowledge for for the molecular biology techniques within the EU project Cryptonet.ie (CVRL –Dep. Agriculture, Fishery and Food- and UCD, Dublin). Co-supervisor of a PhD student at the University of Camerino (Mai Nguyien). Supervisor of Ms student working on the development of molecular tools for the detection of Anisakis spp. in fish 2009 Different roles covered at the University of Westminster:
  • 5. - Supporting staff for CELL SCIENCE MODULE: 3SBS474.Y. Main responsabilities include running tutorials, practicals and marking of working assays. Course developer of Cell Science module FBMS405 for distance learning students (blended course starting on September 2010). Supporting lecturer for module 3BLY614.Y MOLECULAR BIOLOGY & DISEASE DIAGNOSIS and MOLECULAR APPLICATIONS IN FORENSIC SCIENCE 3BLY619. 2010 Supervisor of one MSc student in collaboration with the Dublin Institute of Technology. Additional skills(include techiniques and instruments used) I have always worked as part of a team and I strongly believe that unambiguous roles mixed with a bit of enthusiasm represent the synergy that permits the achievement of good results other than a pleasant working environment. I am familiar with active listening and problem solving techniques that have been helping me in work environment toward difficulties and relationships with colleagues and customers. While I am working I am always extremely precise and meticulous my good organizational skills and experience I can be pragmatic when the circumstances require that such as strict dead lines or difficult situations. I think of myself as an energetic person who has a focus on a solutions approach to problems and a “can do” attitude. High level of knowledge on Macintosh and Windows platform, basic on Unix systems. Microsoft Office, Adobe Photoshop, database designing (Access). Software for bioinformatics analysis: DNAstar®, MrBayes, Paup, ARB package, GenEx (MultiID) and other software for sequence editing and phylogenetic studies. Good knowledge in bacterial microbiology and microbiology techniques, including isolation of new bacterial strains SEM and TEM microscopy techniques as well as Fluorescence microscopy PCR based techniques, both standard and in real time (qPCR, RT-PCR), Radioactive labelling techniques, DNA sequencing, Microarray technology, Molecular cloning, Slot/Dot-Blot analysis, RFLP. DNA sequencing and fragment typing Diatom culturing and isolation techniques Identification of pathogenic protozoa such as Cryptosporidumspp. and Giardia (molecular typing) Identification of parasite such as Anisakis spp., Alariaalatausing molecular tools Identification of common zoonotic parasite (Microscopy-based) Working experience under the ISO 17025 Experience in Quality Auditing within the National Reference Laboratory (CVRL)
  • 6. List of publications 1. T.M. Murphy, J. O’Connell, M. Berzano, C. Dold, J.D. Keegan, A. McCann, D. Murphy, N.M. Holden The prevalence and distribution of Alariaalata, a potential zoonotic parasite, in foxes in Ireland (acceptedby Parasitology Research, December 2011) 2. De Waele, V., Berzano, M., Speybroeck, N., Berkvens, Mulcahy, G.M., Murphy, T.M.Peri-parturient rise of Cryptosporidium oocysts in cows: new insights provided by duplex quantitative real-time PCR. (accepted by Veterinary Parasitology, Jan 2012) 3. Stephen McDonald, Marco Berzano, Peter Ziegler, Thomas M. Murphy & Nicholas M. HoldenQualitative Risk Assessment of Surface Water Contamination with Cryptosporidium spp. Oocysts: A Case Study of Three Agricultural Catchments. Human and Ecological Risk Assessment: An International Journal,Volume 17, Issue 4, 2011 -pages 813- 825DOI:10.1080/10807039.2011.588148 4. De Waele V, Berzano M, Mulchy G and Murphy T M. Age-stratified Bayesian analysis to estimate sensitivity and specificity of four diagnostic tests detecting Cryptosporidium spp. oocysts in calves.J ClinMicrobiol. 2011 Jan;49(1):76-84. Epub 2010 Nov 3 5. Nguyen M, Berzano M, Gualerzi C.O, Spurio R, Development of molecular tools for the detection of freshwater diatomsJournal of Microbiological Methods. 2011 Jan;84(1):33-40. Epub 2010 Oct 16. 6. Murphy TM, Berzano M, O'Keeffe SM, Cotter DM, McEvoy SE, Thomas KA, O'Maoileidigh NP, Whelan KF.Anisakid larvae in Atlantic salmon (Salmosalar L) grilse and post smolts: molecular identification and histopathology.J Parasitology. 2009 Sep 13:1. 7. Metfies K, Berzano M, Mayer C, Roosken P, Gualerzi CO, Medlin L and Muyzer G.An optimized protocol for the identification of diatoms, flagellated algae and pathogenic protozoa with phylochipsMolecular Ecology Notes 7 (6) 2007, 925– 936. 8. Metfies K, Berzano M, Gualerzi C, Muyzer G and Medlin L,Meeting Report: Molecular Ecology Workshop. Detection of Microbial Biodiversity in Environmental Samples, Camerino, Italy, September 19–21, 2005Protist. 2006 Aug;157(3):247-50. Epub 2006 Jun 23 9. Marchant R, Banat IM, Rahman TJ, Berzano M. The frequency and characteristics of highly thermophilic bacteria in cool soil environments. Environ Microbiol. 4:595-602 (2002) 10.Marchant R, Banat IM, Rahman TJ, Berzano M. What are high-temperature bacteria doing in cold environments?Trends Microbiol. 10:120-1(2002)
  • 7. Papers in preparation: 1. 2. Berzano M, McDonald S, Holden N, Murphy T M. Cryptosporidium parvum in wild deers, a reported case in Ireland.(Short communication in preparation) 3. McDonald S, Berzano M, Murphy T M, Holden N. Cryptosporidium in the background: analysis of in a river catchment showing no signs of clinical infection. (In preparation) 4. Berzano M, McDonald S, Ziegler P, Holden N, Murphy T M. Hands in slurry: comparative analysis to evaluate DNA extraction procedures for the identification of Cryptosporidium spp. (in preparation) 5. Berzano M, Marcheggiani S, Rombini S, Gualerzi CO, Spurio RThe application of oligonucleotide probes and microarrays for the identification of freshwater diatoms. (accepted:Hidrobiologia, special issue) 6. Joe Taylor, Marco Berzano, Linda Percy, Jane Lewis and Linda K. Medlin Preliminary results of testing of the MIDTAL microarray- chip to monitor toxic dinoflagellates in the Orkney Islands, UK (submitted on January 2012 to The Journal of Micropalaeontology) Grant applications September 2001 Contribution to the proposal for the EU project MICROPAD, funded by the European Commission under the FP5 programme. The European Commission successfully funded the project (QLK3-CT-2002-01939, http://cordis.europa.eu/data/PROJ_FP5/ACTIONeqDndSESS IONeq112482005919ndDOCeq1743ndTBLeqEN_PROJ.htm) January 2008 Application submitted to the EPA-Ireland for a 3 years project called PATHOWASTE: Risk assessment of waste and drinking water plants for Cryptosporidium and Giardia species. Shortlisted but not funded for lack of fundings. April 2008 Application submitted to the EPA-Ireland for a 3 years fellowship to carry on a project titled: Monitoring environmental samples for zoonotic pathogens using microarray technology and qPCR. Evaluation: >70%; shortlisted but not funded for lack of fundings. January 2009 Contribution to the preparation of the FP7 project called “μAQUA. MicroArrays for Water Quality Assessment under Current and Future Climates”. The project involves 12 different partners from several EU countries. The project is funded and it started on February 2011. http://microaqua.eu/project Poster and oral presentations Since I was an undergraduate student I have presented oral and poster communications at national and international conferences and I have experiences
  • 8. presenting confidently my research in front of a large audience. Presentations are often appreciated for being clear and direct and my communicating skills are supported by a solid knowledge on computer graphics, in particular in the use of software such as Photoshop® or Powerpoint. 2003 May 29-30 S.Benedetto (AP), Italy, annual meeting “Marine and environmental biochemistry, SIMBA2003” 2004 April Cortona 2004, Annual meeting of the Italian Genetic Society. Oral presentation: “La biodiversità delle diatomee quale possibile strumento per l’analisi della qualità delle acque”. September 18th International Diatom Symposium 2004, poster title: “The EU project micropad: microarrays for the detection of protozoa, algae and diatoms. Medlin, L.K., Metfies, K., Muyzer, G., Mayer, C., Berzano, M., Spurio, R. & Gualerzi, C.” 30 September-3 October Riva del Garda, FISV (FederazioneItalianaScienzedella Vita), poster presentation: “Molecular tools for identification of diatoms in freshwaters: alternative strategies for the development of species-specific oligonucleotide probes”. 2005 April Oral presentation at the II Simposio sulle Tecnologie Avanzate: Applicazioni delle nanotecnologie per la difesa nei settori strutturale, elettronico, biotecnologico, “La tecnologia dei microarray applicata alle diatomee, un nuovo approccio per la valutazione qualitative delle acque superficiali” M.Berzano, S.Rombini, S.Marcheggiani, R.Spurio, C.O.Gualerzi August Oral presentation at the International Phycological Congress in Durban (South Africa) “Microarrays and freshwater diatoms, a novel approach to identify target species to assess water quality in aquatic habitats”. September Oral presentation at the Molecular Ecology Workshop: “Microarrays and freshwater diatoms, a novel approach to identify target species to assess water quality in aquatic habitats”, 19-21 September, Camerino (MC), Italy 2007 May 13-17 International Giardia and Cryptosporidium conference in Morelia (Mexico). Poster: Towards the development of an environmental risk assessment model for cryptosporidiosis. October 31 Invited speaker at the Worshop: Cryptosporidium and other protozoan enteric pathogens in the Irish Aquatic Environment– Sources, Reservoirs and Public Health Implications. Institute of Technology, Sligo -Ireland
  • 9. Conferences 2002 July 21-26 Attended the EPC3 “Third European Phycological Congress” in Belfast 2005 August International Phycological Congress in Durban (South Africa). Invited speaker for an oral presentation September Molecular Ecology Workshop held in Camerino, Italy (local organizer). Invited speaker, oral and poster presentation. 2007 May 13-17 II International Giardia and Cryptosporidium conference in Morelia (Mexico). Poster presentation. 2009 October 11-15 III International Giardia and Cryptosporidium conference (Orvieto). 3 Posters presentation and the oral talk “Hands in slurry: comparative analysis to evaluate DNA extraction procedures for the identification of Cryptosporidium spp. from agricultural slurry”.
  • 10. References could be obtained from: - Prof. N.M. Holden Bioresources Research Centre / Biosystems Engineering UCD School of Agriculture, Food Science and Veterinary Medicine- Agriculture and Food Science Centre- University College Dublin- Belfield Dublin 4, IRELAND Tel: +353 1 7167460 Fax: +353 1 7167415 Email: nick.holden@ucd.ie - Dr T. Murphy Department of Agriculture, Fishery and Food, Backweston Campus, CVRL (Parasitology), Stacumny Lane, Celbridge –Co. Kildare, Ireland Tel: +353 1 6157141 Email: tom.murphy@agriculture.gov.ie - Prof. C.O.Gualerzi (PhD Supervisor), Lab. Biologia Molecolare e Biotecnologie Microbiche, Dipartimento di Biologia M.C.A. – University of Camerino, Via Gentile III da Varano, 62032 CAMERINO (MC) - Italy telephone: work +390737403240 work fax +390737636216 email: claudio.gualerzi@unicam.it - Dr Gerard Muyzer Professor in Microbial Systems Ecology, Dept. of Aquatic Microbiology (AMB) Institute for Biodiversity and Ecosystem Dynamics (IBED) University of Amsterdam (UvA) Post address: P.O. Box 94248 1090 GE Amsterdam ,The Netherlands Phone: +31-20-525-6948 Fax: +31-20-525-7832 E-mail: g.muijzer@uva.nl Website: http://www.science.uva.nl/ibed/home.cfm - Prof. Linda K.Medlin ObservatoireOcéanologique de Banyuls-sur-mer, LaboratoireArago, 66651 Banyuls-sur-mer, France Telephone: Work +33-430192400 email: medlin@obs-banyuls.fr home page http://www.awi.de/en/go/molecular_genetics