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Presentation Overview
•   Overview of Dyadic International
•   Products
•   The C1 Fungus Platform
•   Dyadic’s QC/QA Laboratory
•   Internship Project
•   Assays Performed
•   Conclusions
•   Future Plans
Overview Of Dyadic International
Dyadic uses a cutting edge patented C1 technology
  (Chrysosporium lucknowense) to create products
  for multi-billion dollar markets in industrial
  enzymes, biofuels, and biotherapeutics.



    Biopharma   Agriculture   Chemicals   Enzymes




    Biofuels    Diagnostics   Health &    Future
                              Beauty      Applications
Overview Of Dyadic International
Products created through Dyadic’s patented C1
  technology include:
     •   Food Enzymes
     •   Brewing Enzymes
     •   Pulp and Paper Enzymes
     •   Textile Enzymes
     •   Enzymes used to create biofuels
     •   Methods to facilitate the the discovery and
         development of human antibodies and therapeutic
         proteins
Dyadic International’s Market Niche
• Dyadic International market capitalization is $17.7 million
• Market capitalization up +293.3% YTD over the following
  industry peers:
Textile     Food        Brewing     Animal       Starch/   Pulp &       Ethanol
                                    Food         Alcohol   Paper
Rocksoft®   FoodCel     Brewzyme    Dyadic®      Celustar, Fibrezyme®   AlternaFue
Family of   Family of   Family of   Xylanase,    Alphasta Family of     l
Enzymes     Enzymes     Enzymes     Beta         r         Enzymes      Family of
                                    Glucanase,   Family of              Enzymes
                                    and          Enzymes
                                    Cellulase
                                    Family of
                                    Products
Dyadic New Markets - Biofuels

Hydrolysis of hemicellulose
and cellulose to monomer
sugars is one of the
significant steps in
bioethanol production
which can be accomplished
by using cellulases.
Dyadic Patented C1 Technology
               Platform
C1 is a fungal host production organism with
  superior genetic and fermentation
  characteristics that Dyadic originally used to
  manufacture enzymes for the textile industry.
Dyadic Patented C1 Technology
Dyadic International’s C1 technology is based on
  a system of protein production based on the
  patented Chrysosporiumlucknowense fungus.
Gene Discovery
The Fungal HTRS System from Dyadic, enables rapid gene
discovery from all biodiversity (including eukaryotes) using
the C1 host organism.
Host Optimization
The C1 platform allows for optimization of the host
production organism and manufacturing process.
Proteins expressed using the C1 Expression System provide
the foundation for proper glycosylation.
Large Scale Manufacturing
The C1 organism has been used for biomolecule production
in 150,000 liter fermenters since 1996.
The C1 Advantage
• Dyadic has innovated the only high
  throughput robotic gene discovery system
  that utilizes a non-yeast, eukaryotic host
  organism, ideal for rapidly discovering the full
  spectrum of nature’s gene sources that until
  now have been inaccessible.
Why Are Enzymes Important?
Enzyme Group            Industrial Applications
Carbohydrases           Laundry and dishwashing detergents,
                        industrial pipe/tank cleaners, textiles,
                        pulp and paper, fermentation ethanol
Proteases               Brewing, baking goods, protein
                        processing, distilled spirits, laundry and
                        dishwashing detergents, lens cleaners,
                        leather and fur, chemicals
Peptidases              Food and animal feed; Chiral resolution of
                        chemical compounds or pharmaceuticals
Lipases and Esterases   Cleaners, leather and fur, dairy, chemicals
Oxireductases           Chemicals, detergent bleaches, pulp
                        bleaching
Lyases                  Brewing industry; Cosmetics
Transferases            Manufacture of cyclodextrins from starch
Enzymes
Enzymes are essential proteins that are found in all
  living cells. They have two main functions:

  1) they act as catalysts ( a catalyst is a chemical
  which speeds up a chemical reaction )
  2) they control all the chemical reactions going
  on inside the cell.
A Word About Enzymes
Every cell has many different enzymes. Each enzyme is
specific : it only affects one particular chemical. This
chemical that the enzyme alters is called the substrate.
An enzyme can either break apart one substrate into
two different products, or it can join two substrates
into a single product. One example is shown below :
Assay Example - CMCase
Cellulose
• 33% of all plant matter is cellulose
• Cellulose rich plant biomass is one of the
  foreseeable and sustainable source of
  fuel, animal feed, and feed stock for chemical
  synthsesis.
Cellulose
Cellulose is an organic compound consisting of a
  linear chain of several hundred to ten
  thousand linked p-glucose units
     • Component of primary cell wall in green plants
     • Most common organic compound on earth
Sample Reaction
QA/QC Laboratory
QA is short for Quality Assurance, which is defined as
the overall program that ensures that the final
results reported by the lab are correct.

 QC is short for Quality
 Control, which refers to the
 measures that must be
 included during each assay
 run to verify that that the test
 is working properly.
Why Is A QA/QC Lab Important?
• Determining the quality of the product
• Translates to sales and profitability
• Development of new products
For example:
  – Enzymes that decrease in activity, may not meet
    client specifications. Those enzymes may than be
    sold to another client at a reduced price.
Dyadic Internship Project
Test enzyme produced
by Dyadic and its
competitors to validate
enzyme activity to meet
required specifications.
Assays Performed
• CMCase – DNS
     This assay measures the release of reducing sugars by the
       action of a cellulase on a cellulosic substrate
• Xylanase – DNS
     This assay measures the release of reducing sugars by the
       action of a Xylanase on an Arabinoxylan substrate
• Beta-Glucanase
     This assay measures the release of reducing sugars by the
       action of a Beta-Glucanase on a Barley Beta-Glucan
       substrate
Assays Performed

Protein Quantification With
BCA (bicinchoninic acid)




                              SDS Page, used to
                              To separate proteins
                              according to
                              electrophoretic
                              mobility
Assay Example - CMCase
Question: Do current stores of Brewzyme BGX
 CONC (D12160810, Lot# MXEB02810) meet
 activity requirements of client X, who use it to
 break down the cellulose component of a
 particular product line?

Answer: Perform CMCase Assay
Assay Example - CMCase
• CMCase – DNS Assay Essential Components

•   Enzyme samples
•   Carboxymethylcellulose sodium salt
•   DNS (3,5 dinitrosalicylic acid)
•   .015 M Sodium acetate buffer, pH 4.8
•   UV spectrophotmeter
Assay Example - CMCase
Cellulose
• The conversion of
  cellulosic mass to
  fermentable sugars
  through biocatylist
  cellulase durived from
  cellulolytic organisms is
  at the core of Dyadic
  International’s business.
Assay Example - CMCase
• CMCase – DNS

    • This assay measures the release of reducing sugars by
      the action of a cellulase on a cellulosic substrate

    • One unit of activity liberates 1 micromole of reducing
      sugar (expressed as glucose equivalents) in one minute.
      The sample activity is then related to a standard with a
      stated CMCase activity.
Assay Example - CMCase
• Enzyme samples Samples are prepared using
  serial dilutions . Serial dilutions A serial
  dilution is the stepwise dilution of a substance
  in a solution.
Assay Example - CMCase
 • Performing a stability study using CMCase will
   tell us if enzymes meet stability standards.
      • 2 year stability studies
      • Room temperature, 4 C, and 40 C
      • pH & Appearance
15
10
 5                     Series 3
 0                     Series 2
                       Series 1
Assay Example - CMCase
• Serial dilutions are used to establish a
  dynamic range, which is used to describe the
  ratio between the smallest and largest values
  of a changeable quality, such as light.
Assay Example - CMCase
• In addition, glucose
  samples, standards, controls, and blanks are
  prepared.
• Glucose samples – allows us to compare a known
  sugar to sugar produced.
• Standards – a definitive method that produces a
  known result
• Negative control – does not contain enzyme
  extract
• Blanks – A sample that does not contain material
  that can absorb light at the level we want.
Buffer and pH


• Buffers are used to
  dilute the sample
  and to maintain
  pH, a critical factor
  in enzyme reactions.
Assay Substrate
A Carboxymethylcellulose sodium salt substrate
  is prepared.
     • A substrate a molecule upon which an enzyme acts.
Assay Protocol
• The substrate is heated in a boiling bath for 10
  minutes, at which point the diluted sample is
  added. After another 10 minutes, DNS is
  added and placed in boiling water for 15
  minutes.
Assay Colometric Reagent

3,5-dinitrosalicylic acid >> reduction>> 3-
  amino, 5 nitrosalicylic acid




 3,5-dinitrosalicylic acid   3-amino. 5 nitrosalicilic acid
Assay Example - CMCase
Assay Example - CMCase
• Samples are removed, cooled, DNS bonds to
  the broken ends, showing color. Deeper
  color, more reaction. Samples are than
  read on a spectrophotometer.
Assay Example - CMCase
• Absorbance levels are measured through the use of a
  UV spectrophotometer
                           14
                           12
                           10
                            8
                            6                   Series 3
                            4
                            2                   Series 2
                            0                   Series 1
Assay Example - CMCase


Enzyme + Buffer    Serial Dilutions   CMCase + Heat




Product Measured
                   Enzyme Activity
       By                                 DNS
                       Level
Spectrophotmeter
Sample Data Analysis




Assay Example - CMCase
Presentation Summary
Overview of Dyadic International
Products
The C1 Fungus Platform
Enzymes
QC/QA Laboratory
Internship Project
Assays Performed
Conclusions
Future Plans
Advice to Biotechnology Students
• Pay close attention and take notes during lab, as
  well as lecture - you will be using these concepts
  and lab techniques in the lab and will need them
  as reference.

• Take any opportunity to perfect your labs skills
  ( continuing education classes, volunteer
  opportunities). Knowing how to automatically
  perform calculations and basic set ups are
  expected!
Advice to Biotechnology Students
• Ask lots of questions!
• Research areas of interest so you have an idea
  of the kind of biotech work you would like to
  do.
• Take responsibility for the direction of your
  education and career.
• Stretch yourself – it’s OK to fail. It’s not OK to
  leave talent unused!
• Continue to work at Dyadic part-time while
  pursuing my biotechnology degree at PBCC.

• Improve organic chemistry, biochemistry
  knowledge.

• Learn more about enzyme kinetics.

• Learn how to apply my business background to
  bringing enzyme based products to market.
•   Dr. Libby Handel
•   Mark Emalfarb
•   Richard Jundzil
•   Loretta Tucker
•   Mickol Andrews
•   Rashida Thorpe
•   Karen Hubbard
•   Manuel Kavekos
•   Dr. Alexandra Gorgevska
Thank You

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Internship presentation 9 23merge

  • 1.
  • 2. Presentation Overview • Overview of Dyadic International • Products • The C1 Fungus Platform • Dyadic’s QC/QA Laboratory • Internship Project • Assays Performed • Conclusions • Future Plans
  • 3. Overview Of Dyadic International Dyadic uses a cutting edge patented C1 technology (Chrysosporium lucknowense) to create products for multi-billion dollar markets in industrial enzymes, biofuels, and biotherapeutics. Biopharma Agriculture Chemicals Enzymes Biofuels Diagnostics Health & Future Beauty Applications
  • 4. Overview Of Dyadic International Products created through Dyadic’s patented C1 technology include: • Food Enzymes • Brewing Enzymes • Pulp and Paper Enzymes • Textile Enzymes • Enzymes used to create biofuels • Methods to facilitate the the discovery and development of human antibodies and therapeutic proteins
  • 5. Dyadic International’s Market Niche • Dyadic International market capitalization is $17.7 million • Market capitalization up +293.3% YTD over the following industry peers:
  • 6. Textile Food Brewing Animal Starch/ Pulp & Ethanol Food Alcohol Paper Rocksoft® FoodCel Brewzyme Dyadic® Celustar, Fibrezyme® AlternaFue Family of Family of Family of Xylanase, Alphasta Family of l Enzymes Enzymes Enzymes Beta r Enzymes Family of Glucanase, Family of Enzymes and Enzymes Cellulase Family of Products
  • 7. Dyadic New Markets - Biofuels Hydrolysis of hemicellulose and cellulose to monomer sugars is one of the significant steps in bioethanol production which can be accomplished by using cellulases.
  • 8. Dyadic Patented C1 Technology Platform C1 is a fungal host production organism with superior genetic and fermentation characteristics that Dyadic originally used to manufacture enzymes for the textile industry.
  • 9. Dyadic Patented C1 Technology Dyadic International’s C1 technology is based on a system of protein production based on the patented Chrysosporiumlucknowense fungus.
  • 10. Gene Discovery The Fungal HTRS System from Dyadic, enables rapid gene discovery from all biodiversity (including eukaryotes) using the C1 host organism. Host Optimization The C1 platform allows for optimization of the host production organism and manufacturing process. Proteins expressed using the C1 Expression System provide the foundation for proper glycosylation. Large Scale Manufacturing The C1 organism has been used for biomolecule production in 150,000 liter fermenters since 1996.
  • 11. The C1 Advantage • Dyadic has innovated the only high throughput robotic gene discovery system that utilizes a non-yeast, eukaryotic host organism, ideal for rapidly discovering the full spectrum of nature’s gene sources that until now have been inaccessible.
  • 12. Why Are Enzymes Important? Enzyme Group Industrial Applications Carbohydrases Laundry and dishwashing detergents, industrial pipe/tank cleaners, textiles, pulp and paper, fermentation ethanol Proteases Brewing, baking goods, protein processing, distilled spirits, laundry and dishwashing detergents, lens cleaners, leather and fur, chemicals Peptidases Food and animal feed; Chiral resolution of chemical compounds or pharmaceuticals Lipases and Esterases Cleaners, leather and fur, dairy, chemicals Oxireductases Chemicals, detergent bleaches, pulp bleaching Lyases Brewing industry; Cosmetics Transferases Manufacture of cyclodextrins from starch
  • 13. Enzymes Enzymes are essential proteins that are found in all living cells. They have two main functions: 1) they act as catalysts ( a catalyst is a chemical which speeds up a chemical reaction ) 2) they control all the chemical reactions going on inside the cell.
  • 14. A Word About Enzymes Every cell has many different enzymes. Each enzyme is specific : it only affects one particular chemical. This chemical that the enzyme alters is called the substrate. An enzyme can either break apart one substrate into two different products, or it can join two substrates into a single product. One example is shown below :
  • 15. Assay Example - CMCase Cellulose • 33% of all plant matter is cellulose • Cellulose rich plant biomass is one of the foreseeable and sustainable source of fuel, animal feed, and feed stock for chemical synthsesis.
  • 16. Cellulose Cellulose is an organic compound consisting of a linear chain of several hundred to ten thousand linked p-glucose units • Component of primary cell wall in green plants • Most common organic compound on earth
  • 18. QA/QC Laboratory QA is short for Quality Assurance, which is defined as the overall program that ensures that the final results reported by the lab are correct. QC is short for Quality Control, which refers to the measures that must be included during each assay run to verify that that the test is working properly.
  • 19. Why Is A QA/QC Lab Important? • Determining the quality of the product • Translates to sales and profitability • Development of new products For example: – Enzymes that decrease in activity, may not meet client specifications. Those enzymes may than be sold to another client at a reduced price.
  • 20. Dyadic Internship Project Test enzyme produced by Dyadic and its competitors to validate enzyme activity to meet required specifications.
  • 21. Assays Performed • CMCase – DNS This assay measures the release of reducing sugars by the action of a cellulase on a cellulosic substrate • Xylanase – DNS This assay measures the release of reducing sugars by the action of a Xylanase on an Arabinoxylan substrate • Beta-Glucanase This assay measures the release of reducing sugars by the action of a Beta-Glucanase on a Barley Beta-Glucan substrate
  • 22. Assays Performed Protein Quantification With BCA (bicinchoninic acid) SDS Page, used to To separate proteins according to electrophoretic mobility
  • 23. Assay Example - CMCase Question: Do current stores of Brewzyme BGX CONC (D12160810, Lot# MXEB02810) meet activity requirements of client X, who use it to break down the cellulose component of a particular product line? Answer: Perform CMCase Assay
  • 24. Assay Example - CMCase • CMCase – DNS Assay Essential Components • Enzyme samples • Carboxymethylcellulose sodium salt • DNS (3,5 dinitrosalicylic acid) • .015 M Sodium acetate buffer, pH 4.8 • UV spectrophotmeter
  • 25. Assay Example - CMCase Cellulose • The conversion of cellulosic mass to fermentable sugars through biocatylist cellulase durived from cellulolytic organisms is at the core of Dyadic International’s business.
  • 26. Assay Example - CMCase • CMCase – DNS • This assay measures the release of reducing sugars by the action of a cellulase on a cellulosic substrate • One unit of activity liberates 1 micromole of reducing sugar (expressed as glucose equivalents) in one minute. The sample activity is then related to a standard with a stated CMCase activity.
  • 27. Assay Example - CMCase • Enzyme samples Samples are prepared using serial dilutions . Serial dilutions A serial dilution is the stepwise dilution of a substance in a solution.
  • 28. Assay Example - CMCase • Performing a stability study using CMCase will tell us if enzymes meet stability standards. • 2 year stability studies • Room temperature, 4 C, and 40 C • pH & Appearance 15 10 5 Series 3 0 Series 2 Series 1
  • 29. Assay Example - CMCase • Serial dilutions are used to establish a dynamic range, which is used to describe the ratio between the smallest and largest values of a changeable quality, such as light.
  • 30. Assay Example - CMCase • In addition, glucose samples, standards, controls, and blanks are prepared. • Glucose samples – allows us to compare a known sugar to sugar produced. • Standards – a definitive method that produces a known result • Negative control – does not contain enzyme extract • Blanks – A sample that does not contain material that can absorb light at the level we want.
  • 31. Buffer and pH • Buffers are used to dilute the sample and to maintain pH, a critical factor in enzyme reactions.
  • 32. Assay Substrate A Carboxymethylcellulose sodium salt substrate is prepared. • A substrate a molecule upon which an enzyme acts.
  • 33. Assay Protocol • The substrate is heated in a boiling bath for 10 minutes, at which point the diluted sample is added. After another 10 minutes, DNS is added and placed in boiling water for 15 minutes.
  • 34. Assay Colometric Reagent 3,5-dinitrosalicylic acid >> reduction>> 3- amino, 5 nitrosalicylic acid 3,5-dinitrosalicylic acid 3-amino. 5 nitrosalicilic acid
  • 35. Assay Example - CMCase
  • 36. Assay Example - CMCase • Samples are removed, cooled, DNS bonds to the broken ends, showing color. Deeper color, more reaction. Samples are than read on a spectrophotometer.
  • 37. Assay Example - CMCase • Absorbance levels are measured through the use of a UV spectrophotometer 14 12 10 8 6 Series 3 4 2 Series 2 0 Series 1
  • 38. Assay Example - CMCase Enzyme + Buffer Serial Dilutions CMCase + Heat Product Measured Enzyme Activity By DNS Level Spectrophotmeter
  • 39. Sample Data Analysis Assay Example - CMCase
  • 40. Presentation Summary Overview of Dyadic International Products The C1 Fungus Platform Enzymes QC/QA Laboratory Internship Project Assays Performed Conclusions Future Plans
  • 41. Advice to Biotechnology Students • Pay close attention and take notes during lab, as well as lecture - you will be using these concepts and lab techniques in the lab and will need them as reference. • Take any opportunity to perfect your labs skills ( continuing education classes, volunteer opportunities). Knowing how to automatically perform calculations and basic set ups are expected!
  • 42. Advice to Biotechnology Students • Ask lots of questions! • Research areas of interest so you have an idea of the kind of biotech work you would like to do. • Take responsibility for the direction of your education and career. • Stretch yourself – it’s OK to fail. It’s not OK to leave talent unused!
  • 43. • Continue to work at Dyadic part-time while pursuing my biotechnology degree at PBCC. • Improve organic chemistry, biochemistry knowledge. • Learn more about enzyme kinetics. • Learn how to apply my business background to bringing enzyme based products to market.
  • 44. Dr. Libby Handel • Mark Emalfarb • Richard Jundzil • Loretta Tucker • Mickol Andrews • Rashida Thorpe • Karen Hubbard • Manuel Kavekos • Dr. Alexandra Gorgevska