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Genetics: Analysis and Principles Robert J. Brooker Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display CHAPTER 13 TRANSLATION OF mRNA Protein synthesis
[object Object],[object Object],[object Object],[object Object],[object Object],13.1  THE GENETIC BASIS FOR PROTEIN SYNTHESIS Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 13-3
13-16 Figure 13.2 Overview of gene expression Note that the start codon sets the  reading frame  for all remaining codons
The Genetic Code  Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],13-12
13-13 Table 13-2
Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-14
RNA Copolymers Helped to Crack the Genetic Code Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],13-26
13-27
A Polypeptide Chain Has Directionality Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-29
13-30 Figure 13.5 Condensation reaction releasing a water molecule Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display Carboxyl group Amino group
13-31 Figure 13.5 N terminal C terminal Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display
[object Object],[object Object],13-32 Figure 13.6 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object]
13-33 Figure 13.6 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object]
Levels of Structures in Proteins Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-34
[object Object],[object Object],[object Object],[object Object],13-35 Figure 13.7 The amino acid sequence of the enzyme lysozyme 129 amino acids long Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display
Levels of Structures in Proteins Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-36
Levels of Structures in Proteins Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-37
13-38 Figure 13.8 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display
13-41 Wild type mutant A comparison of phenotype and genotype at the molecular, organismal and cellular levels Figure 13.9
[object Object],[object Object],[object Object],[object Object],[object Object],13.2  STRUCTURE AND FUNCTION OF tRNA Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 13-42
Recognition Between tRNA and mRNA Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],13-43 Figure 13.10 tRNAs are named according to the amino acid they bear The anticodon is anti-parallel to the codon
tRNAs Share Common Structural Features Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-51
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-52 Found in all tRNAs Not found in all tRNAs Other variable sites are shown in blue as well Structure of tRNA Figure 13.12
Charging of tRNAs Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],13-53
Charging of tRNAs Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],13-54
13-55 Figure 13.13 The amino acid is attached to the 3’ end by an ester bond tRNA charging
tRNAs and the Wobble Rule Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-56
13-57 tRNAs that can recognize the same codon are termed  isoacceptor tRNAs Recognized very poorly by the tRNA ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display Wobble position and base pairing rules Figure 13.14
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13.3  RIBOSOME STRUCTURE AND ASSEMBLY Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 13-58
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13.3  RIBOSOME STRUCTURE AND ASSEMBLY Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 13-59
Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 13-60 Figure 13.15 Note:  S  or  Svedberg  units  are not additive Synthesis and assembly of all ribosome components occurs in the cytoplasm
Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 13-61 Figure 13.15 The 40S and 60S subunits are assembled in the  nucleolus Then exported to the cytoplasm Synthesized in  the nucleus Produced in the cytosol Formed in the cytoplasm during translation
Functional Sites of Ribosomes Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-62
Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 13-63 Figure 13.16
[object Object],[object Object],[object Object],[object Object],[object Object],13.4  STAGES OF TRANSLATION 13-64
Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display Figure 13.17 Initiator tRNA See animation on your CD
The Translation Initiation Stage Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],13-67 ,[object Object],Figure 13.19 Hydrogen bonding Component of the 30S subunit
13-68 Figure 13.18 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display
13-69 Figure 13.18 70S initiation complex This marks the end of the first stage The only charged tRNA that enters through the P site  All others enter through the A site Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display
The Translation Initiation Stage Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],13-70
Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],13-71 ,[object Object],[object Object],[object Object],Start codon ,[object Object],-6 -5 -4  -3  -2 -1 +1 +2 +3 +4 Most important positions for codon selection
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-72
The Translation Elongation Stage Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],13-73
13-74 Figure 13.20 The 23S rRNA (a component of the large subunit)  is the  actual  peptidyl transferase Thus, the ribosome  is a ribozyme!  Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display
13-75 Figure 13.20 tRNAs at the P and A sites move into the  E and P sites, respectively Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display Max. 2 tRNAs bound to mRNA in a ribosome ! Peptide bond formation is catalyzed by rRNA, not by one of the proteins in the ribosome!
The Translation Elongation Stage Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-76
The Translation Termination Stage Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-77
The Translation Termination Stage Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-78
13-79 Figure 13.21
Bacterial Translation Can Begin Before Transcription Is Completed Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],13-81
[object Object],[object Object],[object Object]
Sequence of Triplet form the genetic code and the mutations in a gene : Frameshift  Mutations: By insertion/deletion of 1 or 2 nucleotiden
Restoration of Frame shift
Mutations: Base changes Very harmful : -  deletion / insertion of one base -  deletion / insertion of  two bases Especially in the beginning of a ORF/gene If at the end of a gene, the ‘shorter’ (or the to the-C-terminal-end-aberrant) protein can still be active Less harmful : -  base substitution (another amino acid; but can also become a stop codon) -  deletion / insertion of three bases (loss of an extra amino acid)
End of Chapter 13

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Translation brooker

  • 1. Genetics: Analysis and Principles Robert J. Brooker Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display CHAPTER 13 TRANSLATION OF mRNA Protein synthesis
  • 2.
  • 3. 13-16 Figure 13.2 Overview of gene expression Note that the start codon sets the reading frame for all remaining codons
  • 4.
  • 6.
  • 7.
  • 9.
  • 10. 13-30 Figure 13.5 Condensation reaction releasing a water molecule Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display Carboxyl group Amino group
  • 11. 13-31 Figure 13.5 N terminal C terminal Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display
  • 12.
  • 13.
  • 14.
  • 15.
  • 16.
  • 17.
  • 18. 13-38 Figure 13.8 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display
  • 19. 13-41 Wild type mutant A comparison of phenotype and genotype at the molecular, organismal and cellular levels Figure 13.9
  • 20.
  • 21.
  • 22.
  • 23.
  • 24.
  • 25.
  • 26. 13-55 Figure 13.13 The amino acid is attached to the 3’ end by an ester bond tRNA charging
  • 27.
  • 28.
  • 29.
  • 30.
  • 31. Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 13-60 Figure 13.15 Note: S or Svedberg units are not additive Synthesis and assembly of all ribosome components occurs in the cytoplasm
  • 32. Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 13-61 Figure 13.15 The 40S and 60S subunits are assembled in the nucleolus Then exported to the cytoplasm Synthesized in the nucleus Produced in the cytosol Formed in the cytoplasm during translation
  • 33.
  • 34. Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display 13-63 Figure 13.16
  • 35.
  • 36. Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display Figure 13.17 Initiator tRNA See animation on your CD
  • 37.
  • 38.
  • 39. 13-68 Figure 13.18 Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display
  • 40. 13-69 Figure 13.18 70S initiation complex This marks the end of the first stage The only charged tRNA that enters through the P site All others enter through the A site Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display
  • 41.
  • 42.
  • 43.
  • 44.
  • 45. 13-74 Figure 13.20 The 23S rRNA (a component of the large subunit) is the actual peptidyl transferase Thus, the ribosome is a ribozyme! Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display
  • 46. 13-75 Figure 13.20 tRNAs at the P and A sites move into the E and P sites, respectively Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display Max. 2 tRNAs bound to mRNA in a ribosome ! Peptide bond formation is catalyzed by rRNA, not by one of the proteins in the ribosome!
  • 47.
  • 48.
  • 49.
  • 51.
  • 52.
  • 53. Sequence of Triplet form the genetic code and the mutations in a gene : Frameshift Mutations: By insertion/deletion of 1 or 2 nucleotiden
  • 55. Mutations: Base changes Very harmful : - deletion / insertion of one base - deletion / insertion of two bases Especially in the beginning of a ORF/gene If at the end of a gene, the ‘shorter’ (or the to the-C-terminal-end-aberrant) protein can still be active Less harmful : - base substitution (another amino acid; but can also become a stop codon) - deletion / insertion of three bases (loss of an extra amino acid)