SlideShare a Scribd company logo
1 of 9
A Tale of Two Labs Unzipping DNA and Molecular Motors
Microtubules
Kinesin
Slide preparation
Osmolytes
Part 2 DNA Unzipping
Unzipping DNA Components: Unzipping construct Optical Tweezers DNA to unzip Optional: proteins
We can unzip anything F F For plot below: Red Line – protein bound to DNA Black Line – naked DNA Black Dotted Line- predictions of protein locations Arrows – missing protein locations Unzipping can detect: Naked DNA “sequence” Changes to DNA sequence proteins bound to DNA And other possible structures
Shotgun DNA Mapping Algorithm matches unzipped random digestion fragments to library of simulated unzipping fragments Initial data is based on yeast genome Library of Simulated Curves Experimental Force Correct Match

More Related Content

Viewers also liked

Potato & climate change
Potato & climate changePotato & climate change
Potato & climate changesarah shaheen
 
Role of Silicon in Alleviating Biotic and Abiotic Stresses in Plants
Role of Silicon in Alleviating Biotic and Abiotic Stresses in PlantsRole of Silicon in Alleviating Biotic and Abiotic Stresses in Plants
Role of Silicon in Alleviating Biotic and Abiotic Stresses in PlantsBHU,Varanasi, INDIA
 
Development of transgenic plants for abiotic stress resistance
Development of transgenic plants for abiotic stress resistanceDevelopment of transgenic plants for abiotic stress resistance
Development of transgenic plants for abiotic stress resistancetara singh rawat
 
Seminar abiotic stress
Seminar abiotic stressSeminar abiotic stress
Seminar abiotic stressAkula Dinesh
 
Biochemical plant defences(HR)
Biochemical plant defences(HR)Biochemical plant defences(HR)
Biochemical plant defences(HR)dev9105
 
Abiotic stress resistance @ sid
Abiotic stress resistance @ sidAbiotic stress resistance @ sid
Abiotic stress resistance @ sidsidjena70
 
Plant response to stress
Plant response to stressPlant response to stress
Plant response to stressfloradelaterra
 

Viewers also liked (9)

Potato & climate change
Potato & climate changePotato & climate change
Potato & climate change
 
Role of Silicon in Alleviating Biotic and Abiotic Stresses in Plants
Role of Silicon in Alleviating Biotic and Abiotic Stresses in PlantsRole of Silicon in Alleviating Biotic and Abiotic Stresses in Plants
Role of Silicon in Alleviating Biotic and Abiotic Stresses in Plants
 
ACCASIA PPT
ACCASIA PPTACCASIA PPT
ACCASIA PPT
 
Development of transgenic plants for abiotic stress resistance
Development of transgenic plants for abiotic stress resistanceDevelopment of transgenic plants for abiotic stress resistance
Development of transgenic plants for abiotic stress resistance
 
Seminar abiotic stress
Seminar abiotic stressSeminar abiotic stress
Seminar abiotic stress
 
Plant stress responses
Plant stress responsesPlant stress responses
Plant stress responses
 
Biochemical plant defences(HR)
Biochemical plant defences(HR)Biochemical plant defences(HR)
Biochemical plant defences(HR)
 
Abiotic stress resistance @ sid
Abiotic stress resistance @ sidAbiotic stress resistance @ sid
Abiotic stress resistance @ sid
 
Plant response to stress
Plant response to stressPlant response to stress
Plant response to stress
 

More from Anthony Salvagno

The Modern Cuisine Movement: The Intersection of Science and Culinary Arts
The Modern Cuisine Movement: The Intersection of Science and Culinary ArtsThe Modern Cuisine Movement: The Intersection of Science and Culinary Arts
The Modern Cuisine Movement: The Intersection of Science and Culinary ArtsAnthony Salvagno
 
The Biophysical Effects of Heavy Water
The Biophysical Effects of Heavy WaterThe Biophysical Effects of Heavy Water
The Biophysical Effects of Heavy WaterAnthony Salvagno
 
Open Notebook Science: Research in Real-Time
Open Notebook Science: Research in Real-TimeOpen Notebook Science: Research in Real-Time
Open Notebook Science: Research in Real-TimeAnthony Salvagno
 
Open Notebook Science - SACNAS Poster
Open Notebook Science - SACNAS PosterOpen Notebook Science - SACNAS Poster
Open Notebook Science - SACNAS PosterAnthony Salvagno
 
Open Notebook Science - UNM Biomed Symposium Edition
Open Notebook Science - UNM Biomed Symposium EditionOpen Notebook Science - UNM Biomed Symposium Edition
Open Notebook Science - UNM Biomed Symposium EditionAnthony Salvagno
 
Open Notebook Science: Research in Real-Time
Open Notebook Science: Research in Real-TimeOpen Notebook Science: Research in Real-Time
Open Notebook Science: Research in Real-TimeAnthony Salvagno
 
Mechanical Properties of Biological Nanocomposites
Mechanical Properties of Biological NanocompositesMechanical Properties of Biological Nanocomposites
Mechanical Properties of Biological NanocompositesAnthony Salvagno
 
BPS 2010 Poster Presentation: Shotgun DNA Mapping with Yeast
BPS 2010 Poster Presentation: Shotgun DNA Mapping with YeastBPS 2010 Poster Presentation: Shotgun DNA Mapping with Yeast
BPS 2010 Poster Presentation: Shotgun DNA Mapping with YeastAnthony Salvagno
 
Protein-DNA Mapping using an AFM
Protein-DNA Mapping using an AFMProtein-DNA Mapping using an AFM
Protein-DNA Mapping using an AFMAnthony Salvagno
 
Proposal for Protein-DNA Mapping using AFM for Lab on a Chip
Proposal for Protein-DNA Mapping using AFM for Lab on a ChipProposal for Protein-DNA Mapping using AFM for Lab on a Chip
Proposal for Protein-DNA Mapping using AFM for Lab on a ChipAnthony Salvagno
 
Candidacy Exam Final Version
Candidacy Exam Final VersionCandidacy Exam Final Version
Candidacy Exam Final VersionAnthony Salvagno
 
Thorough Intro To SDM For Osley Lab (82109)
Thorough Intro To SDM For Osley Lab (82109)Thorough Intro To SDM For Osley Lab (82109)
Thorough Intro To SDM For Osley Lab (82109)Anthony Salvagno
 
Gravitational Lensing and Stuff
Gravitational Lensing and StuffGravitational Lensing and Stuff
Gravitational Lensing and StuffAnthony Salvagno
 
The Biological Preparation Of Shotgun DNA Mapping 5/15/09
The Biological Preparation Of Shotgun DNA Mapping 5/15/09The Biological Preparation Of Shotgun DNA Mapping 5/15/09
The Biological Preparation Of Shotgun DNA Mapping 5/15/09Anthony Salvagno
 
The Joy Of Koching 6/13/08
The Joy Of Koching 6/13/08The Joy Of Koching 6/13/08
The Joy Of Koching 6/13/08Anthony Salvagno
 

More from Anthony Salvagno (20)

The Modern Cuisine Movement: The Intersection of Science and Culinary Arts
The Modern Cuisine Movement: The Intersection of Science and Culinary ArtsThe Modern Cuisine Movement: The Intersection of Science and Culinary Arts
The Modern Cuisine Movement: The Intersection of Science and Culinary Arts
 
Open Practice in Business
Open Practice in BusinessOpen Practice in Business
Open Practice in Business
 
The Biophysical Effects of Heavy Water
The Biophysical Effects of Heavy WaterThe Biophysical Effects of Heavy Water
The Biophysical Effects of Heavy Water
 
Open Notebook Science: Research in Real-Time
Open Notebook Science: Research in Real-TimeOpen Notebook Science: Research in Real-Time
Open Notebook Science: Research in Real-Time
 
Open Notebook Science - SACNAS Poster
Open Notebook Science - SACNAS PosterOpen Notebook Science - SACNAS Poster
Open Notebook Science - SACNAS Poster
 
Open Notebook Science - UNM Biomed Symposium Edition
Open Notebook Science - UNM Biomed Symposium EditionOpen Notebook Science - UNM Biomed Symposium Edition
Open Notebook Science - UNM Biomed Symposium Edition
 
Open Notebook Science: Research in Real-Time
Open Notebook Science: Research in Real-TimeOpen Notebook Science: Research in Real-Time
Open Notebook Science: Research in Real-Time
 
Cyber Infrastructure Day
Cyber Infrastructure DayCyber Infrastructure Day
Cyber Infrastructure Day
 
Valentines day-card-2011
Valentines day-card-2011Valentines day-card-2011
Valentines day-card-2011
 
Linear regime-dog-110310
Linear regime-dog-110310Linear regime-dog-110310
Linear regime-dog-110310
 
Mechanical Properties of Biological Nanocomposites
Mechanical Properties of Biological NanocompositesMechanical Properties of Biological Nanocomposites
Mechanical Properties of Biological Nanocomposites
 
BPS 2010 Poster Presentation: Shotgun DNA Mapping with Yeast
BPS 2010 Poster Presentation: Shotgun DNA Mapping with YeastBPS 2010 Poster Presentation: Shotgun DNA Mapping with Yeast
BPS 2010 Poster Presentation: Shotgun DNA Mapping with Yeast
 
Protein-DNA Mapping using an AFM
Protein-DNA Mapping using an AFMProtein-DNA Mapping using an AFM
Protein-DNA Mapping using an AFM
 
Proposal for Protein-DNA Mapping using AFM for Lab on a Chip
Proposal for Protein-DNA Mapping using AFM for Lab on a ChipProposal for Protein-DNA Mapping using AFM for Lab on a Chip
Proposal for Protein-DNA Mapping using AFM for Lab on a Chip
 
Candidacy Exam Final Version
Candidacy Exam Final VersionCandidacy Exam Final Version
Candidacy Exam Final Version
 
Practice Candidacy Exam
Practice Candidacy ExamPractice Candidacy Exam
Practice Candidacy Exam
 
Thorough Intro To SDM For Osley Lab (82109)
Thorough Intro To SDM For Osley Lab (82109)Thorough Intro To SDM For Osley Lab (82109)
Thorough Intro To SDM For Osley Lab (82109)
 
Gravitational Lensing and Stuff
Gravitational Lensing and StuffGravitational Lensing and Stuff
Gravitational Lensing and Stuff
 
The Biological Preparation Of Shotgun DNA Mapping 5/15/09
The Biological Preparation Of Shotgun DNA Mapping 5/15/09The Biological Preparation Of Shotgun DNA Mapping 5/15/09
The Biological Preparation Of Shotgun DNA Mapping 5/15/09
 
The Joy Of Koching 6/13/08
The Joy Of Koching 6/13/08The Joy Of Koching 6/13/08
The Joy Of Koching 6/13/08
 

Recently uploaded

How to convert PDF to text with Nanonets
How to convert PDF to text with NanonetsHow to convert PDF to text with Nanonets
How to convert PDF to text with Nanonetsnaman860154
 
Tata AIG General Insurance Company - Insurer Innovation Award 2024
Tata AIG General Insurance Company - Insurer Innovation Award 2024Tata AIG General Insurance Company - Insurer Innovation Award 2024
Tata AIG General Insurance Company - Insurer Innovation Award 2024The Digital Insurer
 
A Year of the Servo Reboot: Where Are We Now?
A Year of the Servo Reboot: Where Are We Now?A Year of the Servo Reboot: Where Are We Now?
A Year of the Servo Reboot: Where Are We Now?Igalia
 
Workshop - Best of Both Worlds_ Combine KG and Vector search for enhanced R...
Workshop - Best of Both Worlds_ Combine  KG and Vector search for  enhanced R...Workshop - Best of Both Worlds_ Combine  KG and Vector search for  enhanced R...
Workshop - Best of Both Worlds_ Combine KG and Vector search for enhanced R...Neo4j
 
Handwritten Text Recognition for manuscripts and early printed texts
Handwritten Text Recognition for manuscripts and early printed textsHandwritten Text Recognition for manuscripts and early printed texts
Handwritten Text Recognition for manuscripts and early printed textsMaria Levchenko
 
08448380779 Call Girls In Civil Lines Women Seeking Men
08448380779 Call Girls In Civil Lines Women Seeking Men08448380779 Call Girls In Civil Lines Women Seeking Men
08448380779 Call Girls In Civil Lines Women Seeking MenDelhi Call girls
 
Automating Google Workspace (GWS) & more with Apps Script
Automating Google Workspace (GWS) & more with Apps ScriptAutomating Google Workspace (GWS) & more with Apps Script
Automating Google Workspace (GWS) & more with Apps Scriptwesley chun
 
Powerful Google developer tools for immediate impact! (2023-24 C)
Powerful Google developer tools for immediate impact! (2023-24 C)Powerful Google developer tools for immediate impact! (2023-24 C)
Powerful Google developer tools for immediate impact! (2023-24 C)wesley chun
 
Boost PC performance: How more available memory can improve productivity
Boost PC performance: How more available memory can improve productivityBoost PC performance: How more available memory can improve productivity
Boost PC performance: How more available memory can improve productivityPrincipled Technologies
 
TrustArc Webinar - Stay Ahead of US State Data Privacy Law Developments
TrustArc Webinar - Stay Ahead of US State Data Privacy Law DevelopmentsTrustArc Webinar - Stay Ahead of US State Data Privacy Law Developments
TrustArc Webinar - Stay Ahead of US State Data Privacy Law DevelopmentsTrustArc
 
08448380779 Call Girls In Greater Kailash - I Women Seeking Men
08448380779 Call Girls In Greater Kailash - I Women Seeking Men08448380779 Call Girls In Greater Kailash - I Women Seeking Men
08448380779 Call Girls In Greater Kailash - I Women Seeking MenDelhi Call girls
 
Axa Assurance Maroc - Insurer Innovation Award 2024
Axa Assurance Maroc - Insurer Innovation Award 2024Axa Assurance Maroc - Insurer Innovation Award 2024
Axa Assurance Maroc - Insurer Innovation Award 2024The Digital Insurer
 
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...Miguel Araújo
 
Advantages of Hiring UIUX Design Service Providers for Your Business
Advantages of Hiring UIUX Design Service Providers for Your BusinessAdvantages of Hiring UIUX Design Service Providers for Your Business
Advantages of Hiring UIUX Design Service Providers for Your BusinessPixlogix Infotech
 
Understanding Discord NSFW Servers A Guide for Responsible Users.pdf
Understanding Discord NSFW Servers A Guide for Responsible Users.pdfUnderstanding Discord NSFW Servers A Guide for Responsible Users.pdf
Understanding Discord NSFW Servers A Guide for Responsible Users.pdfUK Journal
 
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdf
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdfThe Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdf
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdfEnterprise Knowledge
 
[2024]Digital Global Overview Report 2024 Meltwater.pdf
[2024]Digital Global Overview Report 2024 Meltwater.pdf[2024]Digital Global Overview Report 2024 Meltwater.pdf
[2024]Digital Global Overview Report 2024 Meltwater.pdfhans926745
 
🐬 The future of MySQL is Postgres 🐘
🐬  The future of MySQL is Postgres   🐘🐬  The future of MySQL is Postgres   🐘
🐬 The future of MySQL is Postgres 🐘RTylerCroy
 
Exploring the Future Potential of AI-Enabled Smartphone Processors
Exploring the Future Potential of AI-Enabled Smartphone ProcessorsExploring the Future Potential of AI-Enabled Smartphone Processors
Exploring the Future Potential of AI-Enabled Smartphone Processorsdebabhi2
 
From Event to Action: Accelerate Your Decision Making with Real-Time Automation
From Event to Action: Accelerate Your Decision Making with Real-Time AutomationFrom Event to Action: Accelerate Your Decision Making with Real-Time Automation
From Event to Action: Accelerate Your Decision Making with Real-Time AutomationSafe Software
 

Recently uploaded (20)

How to convert PDF to text with Nanonets
How to convert PDF to text with NanonetsHow to convert PDF to text with Nanonets
How to convert PDF to text with Nanonets
 
Tata AIG General Insurance Company - Insurer Innovation Award 2024
Tata AIG General Insurance Company - Insurer Innovation Award 2024Tata AIG General Insurance Company - Insurer Innovation Award 2024
Tata AIG General Insurance Company - Insurer Innovation Award 2024
 
A Year of the Servo Reboot: Where Are We Now?
A Year of the Servo Reboot: Where Are We Now?A Year of the Servo Reboot: Where Are We Now?
A Year of the Servo Reboot: Where Are We Now?
 
Workshop - Best of Both Worlds_ Combine KG and Vector search for enhanced R...
Workshop - Best of Both Worlds_ Combine  KG and Vector search for  enhanced R...Workshop - Best of Both Worlds_ Combine  KG and Vector search for  enhanced R...
Workshop - Best of Both Worlds_ Combine KG and Vector search for enhanced R...
 
Handwritten Text Recognition for manuscripts and early printed texts
Handwritten Text Recognition for manuscripts and early printed textsHandwritten Text Recognition for manuscripts and early printed texts
Handwritten Text Recognition for manuscripts and early printed texts
 
08448380779 Call Girls In Civil Lines Women Seeking Men
08448380779 Call Girls In Civil Lines Women Seeking Men08448380779 Call Girls In Civil Lines Women Seeking Men
08448380779 Call Girls In Civil Lines Women Seeking Men
 
Automating Google Workspace (GWS) & more with Apps Script
Automating Google Workspace (GWS) & more with Apps ScriptAutomating Google Workspace (GWS) & more with Apps Script
Automating Google Workspace (GWS) & more with Apps Script
 
Powerful Google developer tools for immediate impact! (2023-24 C)
Powerful Google developer tools for immediate impact! (2023-24 C)Powerful Google developer tools for immediate impact! (2023-24 C)
Powerful Google developer tools for immediate impact! (2023-24 C)
 
Boost PC performance: How more available memory can improve productivity
Boost PC performance: How more available memory can improve productivityBoost PC performance: How more available memory can improve productivity
Boost PC performance: How more available memory can improve productivity
 
TrustArc Webinar - Stay Ahead of US State Data Privacy Law Developments
TrustArc Webinar - Stay Ahead of US State Data Privacy Law DevelopmentsTrustArc Webinar - Stay Ahead of US State Data Privacy Law Developments
TrustArc Webinar - Stay Ahead of US State Data Privacy Law Developments
 
08448380779 Call Girls In Greater Kailash - I Women Seeking Men
08448380779 Call Girls In Greater Kailash - I Women Seeking Men08448380779 Call Girls In Greater Kailash - I Women Seeking Men
08448380779 Call Girls In Greater Kailash - I Women Seeking Men
 
Axa Assurance Maroc - Insurer Innovation Award 2024
Axa Assurance Maroc - Insurer Innovation Award 2024Axa Assurance Maroc - Insurer Innovation Award 2024
Axa Assurance Maroc - Insurer Innovation Award 2024
 
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
 
Advantages of Hiring UIUX Design Service Providers for Your Business
Advantages of Hiring UIUX Design Service Providers for Your BusinessAdvantages of Hiring UIUX Design Service Providers for Your Business
Advantages of Hiring UIUX Design Service Providers for Your Business
 
Understanding Discord NSFW Servers A Guide for Responsible Users.pdf
Understanding Discord NSFW Servers A Guide for Responsible Users.pdfUnderstanding Discord NSFW Servers A Guide for Responsible Users.pdf
Understanding Discord NSFW Servers A Guide for Responsible Users.pdf
 
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdf
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdfThe Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdf
The Role of Taxonomy and Ontology in Semantic Layers - Heather Hedden.pdf
 
[2024]Digital Global Overview Report 2024 Meltwater.pdf
[2024]Digital Global Overview Report 2024 Meltwater.pdf[2024]Digital Global Overview Report 2024 Meltwater.pdf
[2024]Digital Global Overview Report 2024 Meltwater.pdf
 
🐬 The future of MySQL is Postgres 🐘
🐬  The future of MySQL is Postgres   🐘🐬  The future of MySQL is Postgres   🐘
🐬 The future of MySQL is Postgres 🐘
 
Exploring the Future Potential of AI-Enabled Smartphone Processors
Exploring the Future Potential of AI-Enabled Smartphone ProcessorsExploring the Future Potential of AI-Enabled Smartphone Processors
Exploring the Future Potential of AI-Enabled Smartphone Processors
 
From Event to Action: Accelerate Your Decision Making with Real-Time Automation
From Event to Action: Accelerate Your Decision Making with Real-Time AutomationFrom Event to Action: Accelerate Your Decision Making with Real-Time Automation
From Event to Action: Accelerate Your Decision Making with Real-Time Automation
 

KochLab Summary

  • 1. A Tale of Two Labs Unzipping DNA and Molecular Motors
  • 6. Part 2 DNA Unzipping
  • 7. Unzipping DNA Components: Unzipping construct Optical Tweezers DNA to unzip Optional: proteins
  • 8. We can unzip anything F F For plot below: Red Line – protein bound to DNA Black Line – naked DNA Black Dotted Line- predictions of protein locations Arrows – missing protein locations Unzipping can detect: Naked DNA “sequence” Changes to DNA sequence proteins bound to DNA And other possible structures
  • 9. Shotgun DNA Mapping Algorithm matches unzipped random digestion fragments to library of simulated unzipping fragments Initial data is based on yeast genome Library of Simulated Curves Experimental Force Correct Match