review of text mining systems related to life sciences

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Alberto Labarga

Review of text mining systems related to life sciences

Tecnologia Saúde e medicina

Review of existing
textmining systems
Biohackathon 2009

http://www.ebi.ac.uk/webservices/whatizit

http://www.ebi.ac.uk/Rebholz‐srv/ebimed/index.jsp

http://www.novoseek.com/SearchAction.actio
n?query=breast+cancer+and+oxidative+stress
&disambiguationHighligh=bioentity%3Adiseas
e%3Adis_c0006142c0007104c0238033c02427
87c0678222_none_1%3Boperator%3Anull%3A
null%3Btext%3Anull%3Anull%3Boperator%3An
ull%3Anull%3Btext%3Anull%3Anull&filters=aut
hor%3Anull%3Aaut_AmbrosoneChristineB%3A
AND%3Bbioentity%3Adisease%3Adis_c000614
2c0007104c0238033c0242787c0678222_none
_1%3AAND%3Bbioentity%3Afunction%3Afun_
c1518762_none_1%3AAND%3B&filterQuery=
&showType=4&dateTo=&dateToString=&page
Number=1&dateFrom=&dateFromString=&ne
wSearch=2&numDocsProfile=&relatedProfileVi
ew=CONCEPT&fieldList=&corpus=MEDLINE&cr
iterion=1

http://www.novoseek.com/DocumentDetailAc
tion.action?numdocs=0&filters=author:null:au
t_AmbrosoneChristineB:AND;bioentity:disease
:dis_c0006142c0007104c0238033c0242787c0
678222_none_1:AND;bioentity:function:fun_c
1518762_none_1:AND;&corpus=MEDLINE&cri
terion=1&showType=4&docId=17726138&que
ry=breast%20cancer%20and%20oxidative%20s
tress

http://www.novoseek.com/ShowDetailAction.
action?typeId=gene&internalId=gen_1728_ho
mosapiens_1&bioType=true&corpus=MEDLINE

MarkIt Gene Identifier
http://krauthammerlab.med.yale.edu/markit/app

Adaptive Internet Intelligent Agents laboratory's Gene Mention Tagger

http://bcsp1.iis.sinica.edu.tw:8080/aiiagmt/index.jsp

http://www.ncbi.nlm.nih.gov/sites/gquery?term=CD4

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