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Biodiversity Information
       Networks
Free and Open Access to Antarctic Biodiversity data



           SCAR-MarBIN and ANTABIF




                  www.scarmarbin.be
                  www.biodiversity.aq
SCAR-MarBIN & ANTABIF
• www.scarmarbin.be: marine biodiversity information
  network
• www.biodiversity.aq: biodiversity information facility
• Core funding: BELSPO.be (until June 2012)
• International Polar Year 2007/08
• Census of Antarctic Marine Life
• Ocean Biogeographic Information System
SCAR-MarBIN & ANTABIF


• Global Biodiversity Information Facility
• AntECO and AntETR
General philosophy
• Build an electronic ecosystem
• Offer free and open access to data and technology
• Expose all the (biodiversity) data and metadata, in
  multiple contexts
• Remain community-driven, and collaborative
• Adopt strong standardization
• Work for science, conservation, management
Who’s in?
[results]: webportal (s)

               taxonomy, biogeography
                     vizualisation
                     open access
                   900,188 visitors
                    8,011,935 hits
               >50,000,000 dld records
                 ANTABIF coming up
[results]: taxonomic data

                                                • The first RAMS
     all taxa
                                                • Board of 60+ editors
  all species                                   • Feeds WoRMS, CoL and EoL
valid species
                                                • 17,098 taxa (RAMS)
                                                • Building a dynamic RAS
                                                • 24,248 taxa (RAS)
                0   3,750 7,500 11,250 15,000
[results]: geospatial data

                 1,288,441 records
                    198 datasets
                  119 geodatasets
                     5,235 taxa
                 Feeds OBIS, GBIF
                   Downloadable
                      WebGIS
                    Webservices
[results]: webportal (s)
                          Terrestrial
   Marine Biodiversity   Biodiversity


   Webrepository         Field Guides


   Metadata catalogue    Blog


   IPT instance          Data metrics
Antarctic Field Guides
                             afg.biodiversity.aq
                             afg.scarmarbin.be


• Identification aid
• Best available pictures
• Descriptions
• Dynamically built from various sources
Antarctic Field Guides
Products... coming up
Georeferenced genetic data: CAML barcoding
Polar Macroscope working group: BiPolar analyses
Princess Elisabeth Station Data Management
Microbes...
Biogeography Atlas: interactive Atlas
Hedgpeth
1969’s
Folio
Gaps in our knowledge
                        BENTHOS




                        PLANKTON
ANTABIF:100% Open Source
                                    Language: Ruby
                            Design patterns: MVC-ORM
Nuts and bolts
                     Framework: Rails(ActiveRecord) and YUI
                   Search engine: Full text (Elasticsearch-Lucene)
                               Database: PostGresql
                               GIS server: Geoserver
                              Spatial database: PostGIS
                            Mapping client: OpenLayers
                       Web services: RESTish (all resources)
                   Protocols: DIF, dwcore, dwc archive, Tapir…etc
                                GBIF tools : HIT,IPT
                                     OS: FreeBSD
                     Hosting: BBPF (ULB/VUB joint IT Center)
                           Metadata systems: GCMD API
                            Code on GoogleCode page
Thanks

• find out more on
 • www.slideshare.net/scarmarbin
 • www.biodiversity.aq or www.antabif.be

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Danisscadm2011antabif 110909033037-phpapp01

  • 1. Biodiversity Information Networks Free and Open Access to Antarctic Biodiversity data SCAR-MarBIN and ANTABIF www.scarmarbin.be www.biodiversity.aq
  • 2. SCAR-MarBIN & ANTABIF • www.scarmarbin.be: marine biodiversity information network • www.biodiversity.aq: biodiversity information facility • Core funding: BELSPO.be (until June 2012) • International Polar Year 2007/08 • Census of Antarctic Marine Life • Ocean Biogeographic Information System
  • 3. SCAR-MarBIN & ANTABIF • Global Biodiversity Information Facility • AntECO and AntETR
  • 4. General philosophy • Build an electronic ecosystem • Offer free and open access to data and technology • Expose all the (biodiversity) data and metadata, in multiple contexts • Remain community-driven, and collaborative • Adopt strong standardization • Work for science, conservation, management
  • 6. [results]: webportal (s) taxonomy, biogeography vizualisation open access 900,188 visitors 8,011,935 hits >50,000,000 dld records ANTABIF coming up
  • 7. [results]: taxonomic data • The first RAMS all taxa • Board of 60+ editors all species • Feeds WoRMS, CoL and EoL valid species • 17,098 taxa (RAMS) • Building a dynamic RAS • 24,248 taxa (RAS) 0 3,750 7,500 11,250 15,000
  • 8. [results]: geospatial data 1,288,441 records 198 datasets 119 geodatasets 5,235 taxa Feeds OBIS, GBIF Downloadable WebGIS Webservices
  • 9. [results]: webportal (s) Terrestrial Marine Biodiversity Biodiversity Webrepository Field Guides Metadata catalogue Blog IPT instance Data metrics
  • 10.
  • 11.
  • 12.
  • 13.
  • 14.
  • 15.
  • 16.
  • 17.
  • 18.
  • 19. Antarctic Field Guides afg.biodiversity.aq afg.scarmarbin.be • Identification aid • Best available pictures • Descriptions • Dynamically built from various sources
  • 21.
  • 22.
  • 23.
  • 24.
  • 25.
  • 26. Products... coming up Georeferenced genetic data: CAML barcoding Polar Macroscope working group: BiPolar analyses Princess Elisabeth Station Data Management Microbes... Biogeography Atlas: interactive Atlas
  • 28. Gaps in our knowledge BENTHOS PLANKTON
  • 29.
  • 30. ANTABIF:100% Open Source Language: Ruby Design patterns: MVC-ORM Nuts and bolts Framework: Rails(ActiveRecord) and YUI Search engine: Full text (Elasticsearch-Lucene) Database: PostGresql GIS server: Geoserver Spatial database: PostGIS Mapping client: OpenLayers Web services: RESTish (all resources) Protocols: DIF, dwcore, dwc archive, Tapir…etc GBIF tools : HIT,IPT OS: FreeBSD Hosting: BBPF (ULB/VUB joint IT Center) Metadata systems: GCMD API Code on GoogleCode page
  • 31.
  • 32. Thanks • find out more on • www.slideshare.net/scarmarbin • www.biodiversity.aq or www.antabif.be

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