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September | October 2013
EXPERT TOPIC - SALMON
The International magazine for the aquaculture feed industry
International Aquafeed is published six times a year by Perendale Publishers Ltd of the United Kingdom.
All data is published in good faith, based on information received, and while every care is taken to prevent inaccuracies,
the publishers accept no liability for any errors or omissions or for the consequences of action taken on the basis of
information published.
©Copyright 2013 Perendale Publishers Ltd.All rights reserved.No part of this publication may be reproduced in any form
or by any means without prior permission of the copyright owner. Printed by Perendale Publishers Ltd. ISSN: 1464-0058
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36 | InternatIOnal AquAFeed | September-October 2013
EXPERT	T●PIC
Welcome to Expert Topic. Each issue will take an in-depth look
at a particular species and how its feed is managed.
SALMON
EXPERT TOPIC
World view
According	to	statistics	from	the	Global	Salmon	
Initiative	 (GSI)	 approximately	 60	 percent	 of	
the	 world’s	 salmon	 is	 farmed.	 Figures	 show	
that	 in	 2011,	 wild-caught	 salmon	 reached	
approximately	930,000	tonnes.	A	drop	in	the	
ocean	 compared	 to	 the	 1,600,000	 tonnes	
produced	by	aquaculture.	
Salmon	 belong	 to	 a	 family	 of	 fish	 known	
as	Salmonidae	and	based	on	their	distribution,	
are	further	 classified	 in	 to	two	 main	genera;	
Atlantic	 dwellers	 (Salmo)	 and	 Pacific	 Ocean	
based	species	(Oncorhynchus).	The	distinguish-
ing	 factor	 in	 this	 classification	 is	 that	 unlike	
the	 Salmo	 genus,	 species	 belonging	 to	 the	
Oncorhynchus	genus	die	after	spawning.	
Due	to	complex	production	needs,	wide	water	
temperature	ranges	and	biological	conditions,	farm-
ing	of	Atlantic	salmon	-	the	most	popular	species	
of	Salmonidae	-	is	dominated	by	just	a	handful	of	
countries.	Currently,	the	EU,	USA	and	Japan	have	
the	largest	salmon	aquaculture	markets.
Atlantic	 salmon	 is	 pisciverous	 and	 there-
fore	requires	a	diet	rich	in	protein	and	lipids.	
Farmed	fish	are	usually	fed	a	combination	of	
fish	meal	and	fish	oil	and	although	the	waste	
produced	from	fish	processing	can	be	used	in	
certain	 components	 of	 fishmeal	 production,	
the	risk	of	transferring	disease	means	it	cannot	
be	used	directly	in	fish	feed.	There	is	on-going	
research	 into	 supplementing	 fish	 feed	 with	
plant	 or	 microbe-based	 products,	 though	
currently	no	supplement	has	been	found	for	
pisciverous	species	(FAO).	
www.globalsalmoninitiative.org
www.fao.org/fishery/en
1
Iceland
The	 Icelandic	 Ministry	 of	 Fisheries	 and	
Agriculture	 states	 that	 salmon	 farming	 first	
began	in	Iceland	at	the	beginning	of	the	19th	
century,	with	the	first	attempts	to	rear	salmon	
fry	occurring	in	1961.	
The	 first	 land-based	 salmon	 production	
farm	was	developed	in	1978	and	by	the	late	
1980s	bigger	farms	were	being	constructed.	
Between	1984	and	1987,	salmon	eggs	
were	 imported	 from	 Norway.	 At	 this	
time,	there	were	large	investments	in	the	
production	 of	 salmon	 smolts	 for	 export.	
Later,	ocean	ranching	and	cage	and	land-
based	 farming	 attracted	 interest	 among	
investors.	Ocean	ranching	involves	releas-
ing	 young	 reared	 smolts	 into	 rivers	 and	
streams.	The	young	smolts	use	the	coastal	
environment	to	mature	for	around	a	year	
before	 returning	 at	 which	 point	 they	 are	
harvested.	
The	 country	 owes	 much	 of	 its	 farming	
capabilities	to	its	climate.	With	unpolluted	
seas	 and	 an	 abundance	 of	 clear	 water,	
aquaculture	 conditions	 are	 regarded	 as	
among	 the	 best	 in	 the	 world	 in	 Iceland.	
In	 2007,	 600	 tonnes	 of	 Atlantic	 salmon	
were	exported.	By	2009,	there	were	about	
45	 registered	 fish	 farms	 on	 the	 island.	
Figures	show	that	of	these,	about	30	were	
producing	 juveniles,	 mostly	 for	 Salmonid	
on-rearing.	According	to	figures	produced	
September-October 2013 | InternatIOnal AquAFeed | 37
EXPERT	T●PIC
21 3 4
5 6
by	the	Directorate	of	Fisheries,	
the	 facilities	 released	 around	 6	
million	 salmon	 smolts	 with	 an	
annual	 return	 of	 around	 500	
metric	tonnes.	
In	 Iceland,	 selective	 breeding	
and	production	of	healthy	Atlantic	
salmon	 eggs	 are	 supplied	 on	 a	
year	round	basis.	In	recent	years,	
major	 fishery	 operations	 have	
moved	into	aquaculture,	investing	
in	 both	 research	 and	 develop-
ment	and	the	sustainable	farming	
of	salmon.
www.fisheries.is/aquaculture/
species/atlantic-salmon
2
Faroe
Islands
Despite	its	small	size,	the	Faroese	
aquaculture	industry	produces	top	
quality	Atlantic	salmon.	
With	 steady	 ocean	 tempera-
tures	 and	 strong	 currents,	 The	
Faroe	 Islands	 is	 a	 prime	 location	
for	 premium	 salmon	 production.	
As	 a	 result	 of	 this,	 wild	 Atlantic	
salmon	 from	 all	 over	 northern	
Europe	make	their	way	north	of	
the	Faroe	Islands	to	feed.	
Fish	 farming	 in	 the	 Faroe	
Islands	 began	 in	 the	 1970s.	
Nowadays,	 Faroese	 fish	 farming	
today,	which	takes	place	in	ocean-
based	fjords,	consists	primarily	of	
Atlantic	salmon	and	large	rainbow	
trout	and	has	become	a	significant	
component	of	Faroese	economic	
activity	over	the	past	two	decades	
(NASCO).	
http://salmon-from-the-faroe-
islands.com
3
Scotland
Scotland,	which	alongside	Norway	
pioneered	 salmon	 farming	 in	 the	
1960s,	 is	 now	 second	 only	 to	
Norway	in	European	production.	
As	 smolts	 are	 not	 indigenous	 to	
the	 Shetland	 Islands,	 they	 were	
originally	imported	from	Norway	
to	establish	farms.
Atlantic	salmon	aquaculture	in	
Scotland	 has	 increased	 from	 14	
tonnes	in	1971	to	154,164	tonnes	
in	2010	and	Scotland	is	now	the	
largest	 farmed	 salmon	 producing	
country	in	the	EU.	It	is	estimated	
that	the	worldwide	retail	value	of	
Scottish	 farmed	 salmon	 is	 over	
GB£1billion.
The	USA	is	the	largest	export	
market	for	Scottish	farmed	salm-
on,	closely	followed	by	France.
www.scottishsalmon.co.uk
4
Norway
The	 development	 of	 commer-
cial	aquaculture	in	Norway	began	
in	 1970.	 At	 present,	 intensive	
farming	of	Atlantic	salmon	in	the	
country	 is	 substantial,	 accounting	
for	more	than	80	percent	of	total	
Norwegian	 aquaculture	 produc-
tion	(FAO).
According	 to	 the	 international	
environmental	 organisation,	 The	
Bellona	Foundation,	an	average	of	
20	 percent	 of	 the	 oil	 content	 in	
fish	 feed	 in	 Norway	 comes	 from	
vegetable	oils.	
www.fhl.no/english/norwegian-
seafood-federation-article15-14.
html
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AQUACULTURE
NEWS
GLOBAL http://www.perendale.com
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38 | InternatIOnal AquAFeed | September-October 2013
EXPERT	T●PIC
5
Tasmania
Salmon	 farming	 commenced	
in	 Tasmania	 in	 the	 mid-1980s	
after	a	report	to	the	Tasmanian	
Fisheries	Development	Authority	
concluded	 that	 a	 salmon	 farm-
ing	industry	could	be	successfully	
developed	on	the	island	state.	
As	a	result,	in	1984	fertilised	
Atlantic	 salmon	 eggs	 were	 pur-
chased	 from	 the	 Gaden	 Trout	
Hatchery,	Jindabyne,	New	South	
Wales,	Australia	from	stock	origi-
nally	imported	in	the	1960s	from	
Nova	Scotia,	Canada.	A	sea	farm	
was	 then	 established	 at	 Dover	
in	 the	 south	 of	 Tasmania	 and	 a	
hatchery	developed	at	Wayatinah	
in	the	central	highlands.
The	 first	 53	 tonne	 commer-
cial	 harvest	 of	 Atlantic	 salmon	
occurred	 between	 1986	 -1987.	
Nowadays,	the	Tasmanian	indus-
try	now	produces	almost	40,000	
tonnes	per	annum.	
Nearly	 93	 percent	 of	
Tasmanian	 salmonid	 production	
was	sold	in	the	domestic	market	
in	2006.	(DPIW)
www.tsga.com.au
6
New
Zealand
New	Zealand	King	Salmon's	plans	
for	marine	farms	in	Marlborough	
Sound,	 New	 Zealand,	 may	 get	
the	 go	 ahead	 after	 the	 High	
Court	 dismissed	 an	 appeal	
against	them.
The	 decision	 of	 the	 Board	
of	Inquiry,	reached	in	February	
2011,	 to	 approve	 four	 new	
salmon	 farming	 sites	 in	 the	
Marlborough	 Sounds	 was	
appealed	 by	 two	 parties	 and	
that	 appeal	 was	 heard	 at	 the	
High	 Court	 in	 Blenheim	 in	
May.
The	 news	 has	 been	 wel-
comed	 by	 the	 government,	
“The	 impacts	 of	 these	 new	
marine	 farms	 on	 the	 impor-
tant	 recreation	 and	 conserva-
tion	values	of	the	Marlborough	
Sounds	are	small.	This	is	about	
use	 of	 only	 six	 hectares	 of	
more	 than	 100,000	 hectares	
of	water	space	in	the	Sounds,”	
said	 Conservation	 Minister	 Dr	
Nick	Smith.
“We	 are	 a	 Bluegreen	
Government	that	wants	jobs	and	
development	 but	 also	 wants	 to	
ensure	 we	 look	 after	 our	 envi-
ronment	and	great	kiwi	lifestyle.	
This	 decision	 confirms	 this	 bal-
anced	approach.”
“Primary	industries	are	vital	for	
economic	growth	in	our	regions,	
and	aquaculture	plays	an	impor-
tant	 role	 in	 the	 Marlborough	
economy.	 I	 welcome	 the	 news	
that	 extra	 jobs	 will	 be	 created	
as	a	result	of	these	new	farms,”	
said	 Primary	 Industries	 Minister	
Nathan	Guy.
“This	decision	is	another	step	
forward	 for	 New	 Zealand	 King	
Salmon	 in	 its	 plans	 to	 establish	
four	 new	 farms,	 delivering	 an	
additional	 $60	 million	 a	 year	 in	
export	income	and	providing	200	
new	jobs.”	
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September-October 2013 | InternatIOnal AquAFeed | 39
EXPERT	T●PIC
Global
salmon farming
industry
joins forces
with new
sustainability
initiative
by Alice Neal, Associate editor,
International Aquafeed magazine
T
he	 Global	 Salmon	 Initiative	 (GSI)	
unites	 15	 global	 farmed	 salmon	
producers	 committed	 to	 greater	
industry	cooperation	and	transpar-
ency,	in	order	to	achieve	significant	and	con-
tinuous	progress	in	industry	sustainability.
Together,	 these	 15	 companies	 represent	
70	percent	the	global	salmon	industry,	mean-
ing	the	initiative	could	have	a	real	impact	on	
salmon	aquaculture.
The	major	salmon	producing	countries	of	
Chile,	Norway,	Scotland,	the	Faroe	Islands	and	
Canada	are	all	represented	in	the	GSI.
Ygnve	Myhre,	CEO,	SalMar,	Norway	and	
GSI	member,	said,	“While	we	have	been	mak-
ing	attempts	at	sustainability,	salmon	farming	is	
a	young	industry	and	we	recognise	that	more	
needs	to	be	done	and	we	can	do	better.	
“We	know	it	will	take	time	and	will	be	a	
continuous	process,	but	through	the	GSI	we	
have	 committed	 to	 the	 significant	 improve-
ment	 that	 is	 needed.	 This	 initiative	 is	 about	
significant	 improvement	 in	 sustainability.	 It	 is	
not	about	satisfaction	with	the	status	quo.”
The	 GSI	 will	 achieve	 its	 aim	 through	
global	collaboration	and	research,	pooling	of	
resources	and	sharing	knowledge.
“What	is	different	is	that	as	the	GSI,	the	
companies	 have	 committed	 to	 helping	 each	
other	 towards	 improved	 sustainability.	 It’s	
about	 cooperation,	 not	 competition,”	 said	
Myhre.
Alfonso	Marquéz	de	la	Plata,	chair	of	the	
GSI	standards	committee	and	CEO,	Empresas	
AquaChile	 S.A.,	 Chile,	 said,	 “We	 cannot	
choose	between	a	healthy	environment	and	
healthy	food,	we	need	both.	This	initiative	is	
a	practical	approach	to	achieving	both.	While	
meeting	the	standard	at	a	global	level	will	be	
a	significant	challenge,	this	is	a	major	commit-
ment	 from	 the	 salmon	 farming	 industry	 and	
we	hope	that	through	GSI	collaboration,	we	
can	get	there	together.”
The	initial	impetus	for	the	GSI	came	from	
a	 meeting	 in	 2011	 which	 was	 attended	 by	
a	 number	 of	 CEOs.	 At	 that	 meeting,	 the	
CEOs	heard	about	significant	progress	other	
industries	had	made	in	sustainability	by	work-
ing	together.	That	group	of	CEOs	decided	to	
meet	again	and	invite	other	CEOs	and	in	due	
course	it	was	agreed	to	form	the	GSI.
Currently,	the	GSI	is	focusing	on	biosecu-
rity,	feed	and	nutrition	and	meeting	industry	
standards.	
In	 terms	 of	 feed	 ingredients,	 the	 GSI	 is	
keen	to	find	sources	that	do	not	put	further	
stress	on	marine	resources.	The	GSI	is	con-
sidering	 utilizing	 by-products	 and	 is	 working	
closely	with	the	FAO	to	assess	availability	of	
these	resources.
The	 GSI	 has	 chosen	 the	 Aquaculture	
Stewarship	Council	(ASC)	as	its	accreditation	
body	and	aims	to	have	all	its	members	meet	
the	ASC	Salmon	Standard	by	2020.	
Chris	 Ninnes,	 chief	 executive,	 ASC	 said,	
“GSI’s	commitment	to	significantly	improving	
the	 sustainability	 of	 salmon	 farming	 mirrors	
ASC’s	aim	to	transform	aquaculture	towards	
environmental	sustainability	and	social	respon-
sibility.	
“A	 commitment	 at	 this	 scale	 presents	
an	 unprecedented	 opportunity	 to	 realise	 a	
meaningful	 reduction	 in	 the	 environmental	
and	social	impact	of	the	sector.	It	is	a	huge	
statement	of	leadership	intent	to	tackle	these	
issues.”
The	 initiative	 ties	 in	 with	 ASC	 plans	 to	
launch	 a	 certified	 salmon	 to	 the	 market	 in	
early	2014.
“I	 consider	 it	 extremely	 positive	 that	 a	
major	 proportion	 of	 the	 salmon	 farming	
industry	 is	 voluntarily	 seeking	 to	 become	
environmentally	 responsible	 and	 to	 do	 this	
in	a	transparent	way	so	that	all	can	see	the	
reduction	of	industry	impact.	
“Transparency	 is	 one	 of	 the	 corner-
stones	 of	 ASC.	 The	 standards	 require	 an	
unprecedented	amount	of	public	disclosure	
of	farm-level	data	from	certified	farms	that	
are	currently	not	publicly	available	in	most	
cases.	 GSI	 members	 are	 aware	 of	 these	
requirements.	 However,	 as	 an	 industry-led	
initiative	and	by	working	together	members	
are	 well	 placed	 to	 meet	 them	 as	 they	
achieve	certification.”
The	initiative	has	been	warmly	welcomed	
by	 the	 aquaculture	 industry.	 Mary	 Ellen	
Walling,	executive	director,	British	Columbia	
Salmon	 Farmers’	 Association,	 Canada	 said,	
“This	 initiative	 recognises	 that	 there	 is	 no	
limit	 to	 how	 sustainable	 you	 can	 be.	 You	
don’t	reach	the	highest	level	and	stop;	there	
is	 always	 room	 for	 improvement,	 always	
more	 you	 can	 learn.	 This	 collaboration	 will	
benefit	 the	 industry	 in	 BC	 and	 around	 the	
world.”
GSI	 member	 companies	 include	
Acuinova	Chile;	Bakkafrost;	Blumar;	Cermaq;	
Compañía	Pesquera	Camanchaca;	Empresas	
AquaChile;	 Grieg	 Seafood;	 Lerøy	 Seafood	
Group;	 Los	 Fiordos;	 Marine	 Harvest;	
Norway	Royal	Salmon;	SalMar;	Multiexport	
Foods	 SA;	 The	 Scottish	 Salmon	 Company;	
Scottish	Sea	Farms.	
More InforMatIon:
www.globalsalmoninitiative.org
7
Ygnve Myhre, CEO, SalMar, Norway
and GSI member, “While we have
been making attempts at sustainability,
salmon farming is a young industry and
we recognise that more needs to be
done and we can do better"
Chris Ninnes, chief executive, ASC,
“GSI’s commitment to significantly
improving the sustainability of salmon
farming mirrors ASC’s aim to transform
aquaculture towards environmental
sustainability and social responsibility"
40 | InternatIOnal AquAFeed | September-October 2013
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September-October 2013 | InternatIOnal AquAFeed | 41
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Protein Summit 2013
Platform for Future supply, Health & Technology
For information on partnerships & exhibiting, contact: Gerard Klein Essink
gkleinessink@bridge2food.com | ph: +31 30 225 2060 | www.bridge2food.com
24 & 25 September 2013, Rotterdam
International Speakers from Unilever, FAO, Rabobank, Cosucra,TNO,
Rousselot, Innova Market Insights, Koch Membrane Systems, Bühler,
Tereos Syral,Wageningen University,True Price and many more...
THE GLOBALG.A.P. AQUACULTURE STANDARD
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NEXT STOP: ANUGA
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Boulevard Mitte, Boulevard 045
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22-24 October 2013, Barcelona, Spain
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Check out our website for
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www.tour2013.org
processes	such	as	mixing	and	steam	modulat- pelleting	 period	 the	 fine	 grain	 can	 fill	 the	 will	 make	 the	 material	 speed	 fast,	 reduce	
September-October 2013 | InternatIOnal AquAFeed | 11
Extruder OEE for the Production of Fish FeedExtruder OEE for the Production of Fish Feed
AMANDUS KAHL GmbH & Co. KG, Dieselstrasse 5-9, D-21465 Reinbek / Hamburg,
Phone: +49 40 727 71 0, Fax: +49 40 727 71 100, info@amandus-kahl-group.de www.akahl.de
Evaluation
of prebiotic
and probiotic
effects on the
intestinal gut
microbiota and
histology of
Atlantic salmon
by Mads Kristiansen, Einar Ringø
Norwegian College of Fishery, Faculty
of Bioscience, Fisheries and Economics,
University of Tomso, Norway-
Aquamedical Contract Research, Vikan,
Norway; Daniel Merrifield, Aquaculture
and Fish Nutrition Research Group,
School of Biomedical and Biological
Sciences, University of Plymouth, UK; Jose
Gonzalez Vecino, EWOS Innovation AD,
Dirdal, Norway and Reidar Myklebust,
Molecular Imaging Center, Institute
of Biomedicine, University of Bergen,
Norway
T
oday	 it	 is	 generally	 accepted	 that	
the	three	major	routes	of	infection	
in	fish	are	through:	a)	skin,	b)	gills	
and	 c)	 the	 gastrointestinal	 (GI)	
tract.	The	GI	microbiota,	including	lactic	acid	
bacteria	 (LAB),	 have	 been	 suggested	 to	 be	
important	in	fish	health	and	it	has	been	sug-
gested	that	the	autochthonous	gut	bacterial	
community	may	be	responsible	for	control-
ling	the	colonization	of	potential	pathogens	
by	adhesion	competition	and	production	of	
antagonistic	 compounds.	 If	 the	 GI	 tract	 is	
involved	as	an	infection	route,	scientists	have	
address	whether	probiotic	bacteria	are	able	
to	adhere	to	and	colonise	mucosal	surfaces	
and	 outcompete	 endogenous	 bacteria	 and	
pathogens.
Investigating	 these	 topics	 effectively	 in	 in	
vivo	models	can	be	difficult	as	they	are	time	
consuming	 and	 costly.	 Furthermore,	 as	 the	
EU	 has	 recommend	 reductions	 of	 in	 vivo	
experiments	and	the	numbers	of	animals	used	
in	experiments	(Revision	of	the	EU	directive	
for	the	protection	of	animals	used	for	scien-
tific	purposes	[Directive	86/609/EEC];	8th	of	
September	2010),	attempts	have	been	made	
to	use	alternative	ex	vivo	methods	(e.g.	the	
Ussing	 chamber,	 everted	 sack	 and	 intestinal	
sack	methods).
The	 first	 aim	 of	 the	 present	 study	 was	
to	 investigate	 possible	 effects	 of	 a	 prebiotic	
feed	 on	 epithelial	 histology	 and	 indigenous	
GI	 tract	 microbiota	 in	 the	 proximal	 intes-
tine	 (PI)	 and	 distal	 intestine	 (DI)	 of	 Atlantic	
salmon.	 Furthermore,	 the	 same	 effects,	
including	 morphological	 changes	 of	 epithelial	
cells	after	ex	vivo	exposure	of	the	intestinal	
tract	to	Carnobacterium	divergens,	a	probiotic	
bacterium,	 are	 investigated	 by	 light	 micros-
copy	and	electron	microscopy.	The	result	of	
Carnobacterium	 exposure	 is	 of	 high	 impor-
tance	 to	 evaluate	 as	 translocation	 and	 cell	
damage	are	negative	criteria	when	evaluating	
the	use	of	probiotics	in	endothermic	animals	
as	well	as	in	fish.	
The	second	aim	of	the	present	study	was	
to	 evaluate	 the	 bacterial	 community	 of	 the	
PI	and	DI	of	salmon	fed	control	or	prebiotic	
diets,	 before	 and	 after	 ex	 vivo	 exposure	 to	
probiotic	bacteria,	in	order	to	investigate	if	the	
indigenous	 GI	 tract	 microbiota	 is	 modulated	
by	the	different	treatments.	
Finally,	 we	 addressed	 the	 issue	 as	 to	
whether	carnobacteria	isolated	in	the	ex	vivo	
studies	were	able	to	inhibit	in	vitro	growth	of	
the	 pathogenic	 bacteria	 Yersinia	 rückeri	 and	
Aeromonas salmonicida ssp. salmonicida.
Fish husbandry
Two	hundred	and	forty	vaccinated	Atlantic	
salmon	 (Salmo salar L.)	 were	 held	 at	 the	
EWOS	 Innovation	 AS	 Research	 Station,	
Dirdal,	 Norway.	 The	 average	 weight	 at	 the	
start	of	the	experiment	was	350	g.	Two	hun-
dred	 and	 forty	 fish	 were	 distributed	 equally	
(i.e.	 40	 fish	 per	 tank)	 into	 six	 tanks	
supplied	with	500	litres	of	seawater	and	
two	 diets	 were	 offered	 (i.e.	 triplicate	
tanks	 per	 diet).	 The	 control	 diet	 and	
prebiotic	 diet	 had	 the	 same	 ingredient	
composition	(Table	1)	and	differed	only	
in	 the	 inclusion	 of	 0.2	 percent	 EWOS	
prebiosal®	in	the	prebiotic	diet.	EWOS	
prebiosal®,	is	described	as	a	multi-com-
ponent	prebiotic	specifically	designed	for	
salmonid	fish;	more	detailed	information	
about	the	composition	of	EWOS	prebi-
osal®	 is	 not	 available	 for	 commercial	
reasons.	Feeding	was	conducted	twice	a	
day	with	duration	of	2.5	hour	between	each	
feeding	for	a	period	of	15	weeks.	During	the	
feeding	 period	 the	 water	 temperature	 and	
salinity	ranged,	with	season,	from	5.3-12.9	°C	
and	26.7-30.9	gl-1.
The	 samplings	 were	 carried	 out	 at	 two	
different	points:	at	the	start	(week	0)	and	at	
the	end	of	the	trial	(week	15).	An	overview	
of	the	different	treatments	and	groups	is	listed	
in	Table	2.
Probiotic bacteria
The	 probiotic	 bacterium	 used	 in	 this	
experiment	 was	 Carnobacteriumdivergens	
strain	 Lab01	 originally	 isolated	 from	 juvenile	
Atlantic	 salmon	 fed	 a	 commercial	 diet.	 The	
bacteria	 were	 stored	 in	 glycerol-containing	
cryotubes	at	-80	°C	and	inoculated	into	tryptic	
soy	broth	(Difco,	USA)	with	glucose	(10	g	l-1)	
Table 2: Experimental treatments applied to Atlantic salmon
intestine fed control and prebiotic diets
treatment
grouop
type of
treatment
type of
feed
Week of
feeding
1 Saline Control 0
2 C. divergens1 Control 0
3 Saline Control 15
4 C. divergens2 Control 15
5 Saline Prebiotic 15
6 C. divergens2 Prebiotic 15
table 1: Dietary formulation and chemical
composition of the experimental diets
%
Fishmeal 31.25
north atlantic fish oil 13.50
Vegetable protein concentrates1 25.76
Vegetable oil 14.01
Carbohydrate-based binders2 13.00
Micro premixes3 2.48
Chemical composition (%)
Moisture 6.9
Protein4 44.2
Fat4 29.1
nFe4 1.6
ash4 8.4
1 Incudes soy protein concentrate, pea
protein concentrate, wheat gluten, sun
flower meal.
2 Includes wheat and pea starch
3 Includes vitamin, mineral, amino acid
and pigment premixes and 0.2% eWoS
prebiosal® added to the prebiotic diet
(at the expense of an equal volume of
carbohydrate-based binders)
4 dry weight basis
8
42 | InternatIOnal AquAFeed | September-October 2013
EXPERT	T●PIC
and	 NaCl	 (10	 g	 l-1),	
viz.	 TSBgs	 medium.	
After	 approximately	
24	 hours	 of	 pre-
inoculation	 at	 room	
temperature	 with	 an	
agitation	of	190	rpm,	
1	percent	of	the	pre-
culture	 was	 trans-
ferred	to	new	TSBgs	
medium	 and	 growth	
(same	 growth	 condi-
tions	 as	 above)	 was	
measured	 by	 optical	
density	for	evaluation	
of	 the	 growth	 cycle	
(data	 not	 shown).	
Bacterial	 viability	 was	
confirmed	 by	 plating	
bacterial	 suspensions	
on	 tryptic	 soy	 agar	
(Difco)	+	glucose	(15	
g	 l-1)	 and	 NaCl	 (15	
g	 l-1)	 (TSAgs)	 plates.	
The	 results	 obtained	
from	this	study	were	
used	to	calculate	the	
bacterial	 concentra-
tion	 in	 the	 experi-
mental	bacterial	solu-
tions.
Table 3: Cultruable heterotrophic bacterial levels (log CFU g-1 wet weight) and identity (as determinedfrom phenotypic characteristics and 16S rRNA
sequence analysus) obtained from different groups after the ex vivo assay
Proximal intestine Distal intestine
Group
tVC (log
CFU g-1)
no Bacteria %
tVC (log
CFU g-1)
no Bacteria %
1 1.72 12
Psychrobacter aquimaris - 16.7%
Psychrobacter glancincola - 16.7%
Psychrobacter spp - 66.6%
1.73 11
Psychrobacter glancincola - 9.0%
Psychrobacter spp - 36.3%
Pseudoalteromonas - 36.3%
Brevibacterium sp. - 9.0%
Moraxella sp. - 9.0%
2 6.04 7 Carnobacterium divergens - 100% 5.56 7 Carnobacterium divergens - 100%
3 2.08 17
Carnobacterium divergens - 70.6%
Pseudomonas fluva - 17.6%
Pantoea spp - 5.9%
Gammaproteobacteria - 5.9%
2.69 15
Carnobacterium divergens - 33.3%
Pseudomonas fluva - 6.6%
Shewanella baltica - 6.6%
Vibrio splendidus - 13.3%
Gammaproteobacteria - 40%
4 6.26 8
Carnobacterium divergens - 87.5%
Pseudomonas spp - 12.5%
6.68 8 Carnobacterium divergens - 100%
5 2.34 47
Carnobacterium divergens - 29.8%
Carnobacterium spp - 51%
Pseudomonas antartica - 2.1%
Pseudomonas korensis - 2.1%
Enterbacter hormaechi - 8.5
Gammaproteobacteria - 4.3%
Uncultured bacterial clone CK20 - 2.1%
1.71 44
Carnobacterium divergens - 25%
Carnobacterium spp - 52.3%
Pantoea spp. - 18.2%
enterobacter spp. - 4.5%
6 6.63 25
Psychrobacter marincola - 4%
Pseudomonas sp - 8%
Carnobacterium divergens - 20%
Carnobacterium spp - 68%
6.7 17
acinetobacter sp. - 5.6%
Carnobacterium divergens - 94.2%
*N = number of isolates identified
September-October 2013 | InternatIOnal AquAFeed | 43
EXPERT	T●PIC
Ex vivo exposure to bacteria
Three	 fish	 were	 randomly	 selected	 from	
two	 of	 the	 tanks	 fed	 each	 diet	 and	 killed	
with	a	blow	to	the	head.	The	entire	intestine,	
from	the	last	pyloric	caeca	to	the	anus,	was	
removed	 aseptically	 and	 intestinal	 content	
was	gently	squeezed	out,	before	the	intestine	
was	 flushed	 three	 times	 with	 sterile	 saline	
solution	(0.9%	NaCl),	in	order	to	remove	the	
allochthonous	gut	bacteria.	The	posterior	end	
was	 tightly	 tied	 with	 cotton	 thread	 before	
filling	(ca.	1.5	ml)	with	the	appropriate	assay	
solution	(Table	2),	tying	the	anterior	end	and	
suspending	the	sealed	intestinal	tube	in	sterile	
saline	solution.	The	intestinal	sacks	were	then	
incubated	at	10	ºC	for	one	hour.
After	 incubation	 the	 intestine	 was	 cut	
open,	 the	 contents	 discarded	 and	 flushed	
three	times	with	sterile	saline	solution.
Post ex vivo bacterial assays
Samples	 for	 bacteriology	 from	 each	 seg-
ment	from	the	first	sampling	point	(groups	1	
and	2)	were	prepared	by	homogenizing	1	g	of	
intestinal	tissue	(PI	or	DI)	in	1	ml	sterile	saline	
using	a	Stomacher	(Seaward	Laboratory,	UK).	
Gut	samples	for	bacteriology	from	the	second	
sampling	 (groups	 3-6)	 were	 prepared	 by	
gently	scraping	off	mucus	with	a	sterile	scalpel.	
Thereafter,	the	segments	were	weighed.	Both	
the	 homogenates	 and	 mucus	 were	 used	 to	
create	 serial	 ten-fold	 dilutions	 which	 were	
spread	plated	(100	μl)	on	TSAgs	plates	and	
incubated	at	6	ºC	for	up	to	1	week	to	deter-
mine	viable	counts	of	culturable	heterotrophic	
bacteria.
After	 sub-culturing	 on	 TSAgs	 to	 achieve	
pure	cultures,	phenotypic	bacterial	identifica-
tion	(Gram	stain,	colony	morphology,	oxidase	
-	and	catalase	tests	and	glucose	fermentation)	
was	carried	out	on	random	colonies	from	all	
plates	 containing	 between	 10-300	 colonies.	
A	total	of	168	bacterial	strains	were	isolated	
from	the	two	sampling	points.
16S rRNA characterization
of isolates
The	bacterial	DNA	was	isolated	following	
the	protocol	from	a	commercial	kit	(DNeasy	
Blood	 and	 Tissue,	 Qiagen,	 USA).	 Specific	
treatment	 for	 Gram-positive	 and	 Gram-
negative	 isolates	 was	 carried	 out	 according	
to	the	manufacturer’s	instructions.	Template-
DNA	 was	 diluted	 to	 a	 concentration	 of	
approximately	 20-30	 ng	 μl-1	 using	 Milli-Q	
water.	 The	 PCR	 mix	 constituted	 of	 8	 μl	 of	
template-DNA,	 36	 μl	 Milli-Q	 water,	 5	 μl	
10x	 buffer	 F511,	 0.25	 μl	 dNTP,	 0.25	 μl27F	
forward	primer,	0.25	μl	1492R	reverse	primer	
and	0.25	μl	DNA-polymerase	yielding	a	total	
volume	of	50μl.	PCR	thermal	cycling	consisted	
of	initial	denaturation	of	94	ºC,	followed	by	
35	cycles	of	94	ºC	for	20	s,	53	ºC	for	20	s	
and	72	ºC	for	90	s	with	a	final	extension	step	
of	72	ºC	for	7	min.	To	verify	PCR	products,	
samples	were	run	on	gel	electrophoresis.	The	
PCR-products	were	desalted	by	mixing	20	μl	
of	 PCR-product	 with	 40	 μl	 of	 100	 percent	
ethanol	and	2	μl	of	3M	NaOAc	(pH	5.3)	and	
vortexed	well.	Samples	were	then	incubated	
on	ice	for	30	min	followed	by	centrifugation	
for	20	minutes	at	14,000	gusing	an	Eppendorf	
Microcentrifuge	 Model	 5417R.	 The	 superna-
tant	was	removed	and	pellet	washed	in	100	
μl	of	80	percent	ethanol	and	centrifuged	for	
another	 5	 minutes	 at	 14,000	 g.	 The	 super-
natant	was	removed	and	the	pellet	dried	at	
room	temperature	for	60	minutes.	The	pellet	
was	 then	 resuspended	 in	 30	 μl	 of	 Milli-Q	
water.	Purified	PCR	products	were	sequenced	
as	described	elsewhere.	
The	resultant	nucleotide	sequences	were	
submitted	 to	 a	 BLAST	 search	 in	 GenBank	
(http://blast.ncbi.nlm.nih.gov/Blast.cgi)	 to	
retrieve	 the	 closest	 known	 alignment	 identi-
ties	 for	 the	 partial	 16S	 rRNA	 sequences.	
Gene	 sequences	 that	 showed	 higher	 than	
95	percent	similarity	to	a	genus	or	species	in	
GenBank	were	categorized	accordingly.
In	vitro	growth	inhibition	of	pathogens	by	
LAB	isolated	form	the	ex	vivo	studies
Eleven	randomly	chosen	LAB	isolated	from	
the	 intestinal	 tract	 after	 ex	 vivo	 exposure	
and	 one	 type	 strain,	 Carnobacterium inhibens	
(CCUG	31728),	were	tested	for	antagonistic	
effects	 against	 two	 different	 fish	 pathogens.	
The	pathogenic	bacteria	used	in	the	present	
investigation	 were	 Yersinia	 rückeri	 (CCUG	
14190)	and	Aeromonas salmonicida ssp. salmo-
nicida	(Ass	4017).	C. inhibens (CCUG	31728)	
was	 used	 as	 a	 positive	 control	 as	 previous	
investigations	 have	 demonstrated	 that	 this	
strain	 has	 an	 inhibiting	 effect	 towards	 V.
anguillarum	and	A. salmonicida.	In	vitro	growth	
inhibition	 of	 the	 two	 fish	 pathogens	 by	 the	
twelve	 LAB	 was	 tested	 using	 a	 microtitre	
plate	assay	described	 in	detail	by	Ringø	and	
co-authors.	 This	 method	 has	 been	 used	 in	
two	recent	studies.	The	pathogenic	bacterial	
levels	 at	 the	 start	 of	 assays	 were	 106	 cells	
ml-1.	 Positive	 in	 vitro	 growth	 inhibition	 was	
defined	when	no	growth	(turbidity	<	0.05	at	
optical	density;	OD600	nm)	of	the	pathogen	
44 | InternatIOnal AquAFeed | September-October 2013
EXPERT	T●PIC
was	 detected.	 Sterile	
growth	 media	 and	 the	
pathogens	 were	 used	
as	 controls.	 Growth	 (at	
OD600)	 of	 the	 patho-
gens	 without	 addition	
of	sterile	supernatant	of	
LAB	 was	 approximately	
0.6.	Measurements	were	
carried	 out	 each	 hour	
using	an	automatic	plate	
reader	 (Bioscreen	 C,	
Labsystems,	Finland).
Histology
Samples	 for	 light	
microscopy	 (LM)	 and	
transmission	 electron	
microscopy	(TEM)	were	
collected	 by	 excising	
approximately	 5	 mm	
from	 the	 posterior	 part	
of	the	PI	and	DI.	The	samples	were	immedi-
ately	fixed	in	McDowells	fixative	and	stored	
at	 4	 ºC	 until	 processing.	 TEM	 and	 LM	 sam-
ples	were	processed	as	described	elsewhere	
Morphological	observations	were	made	from	
multiple	micrographs	(8)	from	each	intestinal	
region	 from	 two	 fish	 within	 each	 group.	
The	following	morphological	parameters	were	
observed;	 detached	 microvilli,	 enterocytes	
detached	from	the	basal	membrane,	disinte-
grated	cell	junctions,	presence	of	goblet	cells,	
presence	of	absorptive	vacuoles	and	presence	
of	intraepithelial	lymphocytes.
Results
Bacterial	levels	after	ex	vivo	exposure
The	 adherent	 bacterial	 levels,	 as	 deter-
mined	by	using	a	stomacher	(groups	1	and	2)	
or	by	the	collection	of	mucus	(and	subsequent	
weighing	 of	 the	 segments	 the	 mucus	 was	
removed	from)	(groups	3-6),	did	not	seem	to	
differ	which	indicates	that	the	different	sam-
pling	methods	were	similarly	effective.	Table	
3	presents	an	overview	of	the	autochthonous	
bacterial	 levels	 isolated	 from	 each	 segment	
and	each	group	exposed	to	either	saline	or	C.
divergens.	All	values	are	expressed	as	log	col-
ony	forming	units	(CFU)	g-1.	Autochthonous	
bacteria	 isolated	 from	 intestines	 of	 fish	 fed	
the	control	diet	at	the	experimental	start	and	
exposed	to	saline	was	approximately	log	1.7	
CFU	g-1	in	both	PI	and	DI,	while	the	number	
of	 bacteria	 isolated	 from	 intestines	 of	 fish	
exposed	to	C. divergens	was	log	6.04	CFU	g-1	
in	PI	and	log	5.56	CFU	g-1	in	DI.	
After	 15	 weeks	 of	 feeding	 slightly	 higher	
values	 were	 present	 in	 PI	 of	 fish	 fed	 the	
prebiotic	 diet	 post	 exposure	 to	 saline	 or	 C.
divergens	 compared	 to	 fish	 fed	 the	 control	
diet.	Indeed,	the	bacterial	level	in	the	prebi-
otic	fed	fish	intestine	exposed	to	C. divergens	
(group	6)	was	234	percent	greater	than	that	
of	the	control	fed	fish	intestine	exposed	to	C.
divergens	 (group	 4).	 In	 both	 dietary	 groups,	
a	 similar	 bacterial	 level	 (~log	 6.70	 CFU	 g-1)	
was	detected	in	DI	exposed	to	C. divergens.	
However,	 a	 higher	 bacterial	 level	 (log	 2.69	
CFU	g-1)	was	observed	in	the	DI	of	control	
fed	fish	exposed	to	saline	than	that	of	prebi-
otic	fed	fish	(log	1.71	CFU	g-1).
Isolation	and	identification	of	bacteria	after	
ex	vivo	exposure
A	 total	 of	 168	 bacterial	 strains	 were	
isolated	 from	 the	 two	 samplings.	 Among	
these,	40	isolates	were	isolated	from	the	first	
sampling	point	and	128	isolates	were	isolated	
from	 the	 second	 sampling	 point.	 All	 isolates	
were	tested	for	morphology	and	biochemical	
properties	(colony	morphology,	Gram-testing,	
oxidase	 -	 and	 catalase	 tests	 and	 glucose	
fermentation).	
One	 hundred	 and	 eleven	 isolates	 were	
further	identified	by	partial	sequencing	of	the	
16S	rRNA	gene.	Isolates	not	identified	by	16S	
rRNA	 gene	 sequencing	 but	 showing	 similar	
biochemical	 and	 physiological	 properties	 to	
those	isolates	identified	by	16S	rRNA	genes	
were	 defined	 as	 ‘-like’.	 Table	 3	 provides	 an	
overview	 of	 the	 different	 bacterial	 species	
isolated	in	each	experimental	group.
Week 0
Microbiota	 of	 fish	 fed	 control	 diet	 and	
intestines	 exposed	 to	 saline	 (group	 1):	
Analysis	 of	 the	 adherent	 microbiota	 in	 the	
PI	of	fish	fed	the	control	diet	and	exposed	
to	 sterile	 saline	 (group	 1)	 revealed	 that	 all	
isolates	belonged	to	the	genus	Psychrobacter.	
Of	 the	 12	 strains	 isolated	 from	 the	 PI	 of	
this	 group,	 two	 strains	 showed	 96	 percent	
similarity	 to	 Psychrobacter aquimaris,	 two	
strains	 were	 identified	 as	 Psychrobacter gla-
cincola	while	eight	strains	were	identified	as	
Psychrobacter spp.-	like.	
The	DI	of	fish	exposed	to	saline	at	the	first	
sampling	point	showed	a	more	diverse	com-
munity	which	consisted	of	4	different	bacterial	
genera.	Of	these,	ten	strains	were	indentified	
to	 genus	 level	 and	 one	 strain	 was	 identified	
to	 species	 level.	 The	 bacteria	 identified	 to	
genus	 level	 belonged	 to	 Pseudoalteromonas,	
Psychrobacter,	 Moraxella	 and	 Brevibacterium,	
while	 the	 last	 strains	 showed	 high	 similarity	
(98	percent)	to	Psychrobacter glacincola.
Microbiota	 of	 fish	 fed	 control	 diet	 and	
intestines	exposed	to	C. divergens	(group	2):	
All	 bacteria	 isolated	 from	 PI	 and	 DI	 of	 fish	
exposed	to	C. divergens	at	the	first	sampling	
(group	2)	were	identified	as	C. divergens.	This	
observation	indicates	that	C. divergens	are	able	
to	 adhere	 to	 the	 intestinal	 mucosa	 in	 both	
segments.
Week 15
Microbiota	 of	 fish	 fed	 control	 diet	 and	
intestines	exposed	to	saline	(group	3):	After	15	
weeks	of	feeding	on	the	control	diet,	the	iso-
lated	strains	(17)	from	the	PI	exposed	to	saline	
were	dominated	by	C. divergens;	70.6	percent	
of	the	isolates	were	identified	as	C. divergens,	
17.6	 %	 were	 identified	 as	 Pseudomonas fulva,	
5.9	%	belonged	to	Pantoea spp.	while	5.9	%	of	
the	isolates	were	identified	as	members	of	the	
class	Gammaproteobacteria.	The	bacteria	isolat-
ed	from	the	DI	were	identified	as	C. divergens,	
two	 strains	 as	 Vibrio splendidus,	 one	 strain	 as	
Shewanella baltica,	one	strain	as	Pseudomonas
fulva	 and	 six	 other	 strains	 were	 identified	 as	
Gammaproteobacteria.
Microbiota	 of	 fish	 fed	 control	 diet	 and	
intestines	exposed	to	C. divergens	(group	4).	In	
the	intestine	of	fish	fed	the	control	diet	for	15	
weeks	and	exposed	to	C. divergens,	the	identi-
fied	bacterial	strains	isolated	from	both	PI	and	
DI	were	dominated	by	C. divergens.	Only	one	
strain,	identified	as	Pseudomonas spp.,	isolated	
from	 the	 PI	 of	 1	 fish	 did	 not	 belong	 to	 the	
species	C. divergens.
Microbiota	 of	 fish	 fed	 prebiotic	 diet	 and	
Table 4: Identification of LAB strains and pathogen antagonistic activity of extracellular products used in the in vitropathogen asays
Isolate
code
Source
group
Intestinal
region
Closest known
species
Strain accession no
Identity
(%)
antagonism
33 Group 2 Proximal C. divergens lHICa_53_4 FJ656716.1 98 Y. ruckeri a. Salmon
40 Group 2 Distal C. divergens lHICa_53_4 FJ656716.1 98 + -
75 Group 3 Proximal C. divergens lHICa_53_4 FJ656716.1 99 + -
84 Group3 Distal C. divergens lHICa_53_4 FJ656716.1 100 + -
14 Group5 Proximal Carnobacterium sp H126a eF204312.1 86 + -
57 Group5 Proximal C. divergens lHICa_53_4 FJ656716.1 99 + +
17 Group 5 Distal Carnobacterium sp H126a eF204312.1 99 + -
154 Group 5 Distal C. divergens lHICa_53_4 FJ656716.1 92 + -
173 Group 4 Proximal C. divergens lHICa_53_4 FJ656716.1 99 + -
127 Group 4 Distal C. divergens lHICa_53_4 FJ656716.1 99 + -
99 Group 8 Proximal C. divergens lHICa_53_4 FJ656716.1 99 + -
*_originally isolated from the digestive tract of Atlantic salmon (salmo salar) [20]
September-October 2013 | InternatIOnal AquAFeed | 45
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intestines	 exposed	 to	 saline	 (group	 5):	 The	
intestine	exposed	to	saline	of	fish	fed	the	prebi-
otic	diet	for	15	weeks	showed	higher	diversity	
compared	 to	 the	 other	 groups	 exposed	 to	
saline	 (groups	 1	 and	 3).	 Of	 the	 47	 strains	
isolated	from	the	PI,	14	were	identified	as	C.
divergens,	one	as	Pseudomonasantarctica,	one	as	
Pseudomonas koreensis,	four	as	Enterobacter hor-
maechei	and	one	as	uncultured	bacterial	clone	
CK20.	 The	 remaining	 isolated	 strains	 were	
identified	 as	 members	 of	 the	 Carnobacterium	
and	Acinetobacter genera.	The	dominant	bacte-
ria	in	the	PI	of	this	group	belonged	to	carno-
bacteria	(81%)	and	30	percent	of	total	isolates	
were	identified	as	C. divergens.
The	 bacterial	 composition	 of	 the	 isolates	
from	the	DI	of	fish	fed	the	prebiotic	diet	for	
15	weeks	were	relatively	low	in	diversity.	Of	
the	total	number	of	strains	isolated	(44)	from	
the	DI	exposed	to	saline	34	were	identified	
as	Carnobacterium,	eight	strains	showed	high	
similarity	(%)	to	Pantoea spp.	and	two	strains	
belonged	to	the	genus	Enterobacter.
Microbiota	 of	 fish	 fed	 prebiotic	 diet	 and	
intestines	 exposed	 to	 C. divergens	 (group	 6):	
In	 group	 6,	 fish	 fed	 the	 prebiotic	 diets	 for	
15	 weeks	 and	 exposed	 to	 C. divergens,	 the	
isolated	 strains	 in	 the	 PI	 were	 dominated	 by	
C. divergens	and	C. divergens-like	strains.	Of	the	
22	carnobacteria	isolated,	five	were	identified	
as	C. divergens	by	16S	rRNA	sequencing	while	
17	isolates	were	identified	as	C. divergens-like.	
Three	other	isolates	were	identified	as	mem-
bers	 of	 the	 genera	 Pseudomonas	 (2	 strains)	
and	Psychrobacter	(one	strain).	Of	the	17	strains	
isolated	and	idesntified	from	the	DI	of	group	6,	
C. divergens	and	C. divergens-like	strains	domi-
nated	with	only	one	isolate,	which	showed	high	
similarity	(99	percent)	to	Acinetobacter spp.,	not	
belonging	to	this	species.
Microscopical analyses
Light	 microscopy	 (LM):	 All	 LM	 micro-
graphs,	both	from	PI	and	DI	of	the	prebiotic	
groups	 (5	 and	 6)	 showed	 no	 morphological	
differences	compared	to	the	control	feeding	
regime	 (groups	 1-4).	 All	 intestinal	 sections	
examined	 appeared	 normal	 and	 healthy;	 no	
signs	of	detached	enterocytes,	necrotic	ente-
rocytes,	 widened	 lamina	 propria	 or	 necrosis	
were	observed	and	the	number	of	goblet	cells	
were	similar	in	both	treatments	(examples	are	
displayed	in	Figure	1).
Transmission	electron	microscopy	(TEM):	
Similar	 to	 the	 observations	 using	 LM,	 TEM	
revealed	 no	 differences	 between	 treatments	
or	exposure	groups;	all	micrographs	revealed	
healthy	epithelial	brushborder,	no	deteriation	
of	tight	junctions	was	observed	and	microvilli	
appeared	 uniform.	 The	 presences	 of	 rodlet-
like	cells	(as	shown	in	Figure	2)	were	present	
in	the	PI	and	DI	of	all	groups.	The	
numbers	of	rodlet	cells	present	in	
the	 PI	 displayed	 great	 differences	
between	 individual	 fish	 but	 were	
always	 observed	 in	 the	 upper	
half	 of	 the	 epithelium,	 above	 the	
underlying	 intraepithelial	 lym-
phocytes.
In	 vitro	 growth	 inhibition	 of	
two	fish	pathogens	by	extracellular	
extracts	of	LAB	isolated	from	ex	
vivo	studies
Identification	 by	 partial	
sequencing	of	the	16S	rRNA	genes	
of	the	eleven	LAB	strains	isolated	
from	the	ex	vivo	experiments	and	
subsequently	 used	 in	 the	 in	 vitro	
pathogen	 antagonism	 assays	 are	
displayed	 in	 Table	 4.	 The	 results	
show	that	growth	inhibition	of	Y.	
rückeri	was	obtained	from	extra-
cellular	extracts	from	all	strains	of	
carnobacteria	 isolated	 from	 the	
ex	vivo	experiment.	However,	in	
vitro	 growth	 inhibition	 of	 A. sal-
monicida ssp. salmonicida was	only	
obtained	 from	 the	 extracellular	
extract	of	C	divergens	isolate	57.	
The	 extracellular	 products	 from	
the	 positive	 control,	 C. inhibens
CCUG	31728,	did	not	inhibit	the	
growth	 of	 A. salmonicida	 ssp.	 sal-
monicida.
Discussion
The	 ex	 vivo	 intestinal	 sack	
method	has	been	used	in	several	
studies	to	evaluate	possible	histo-
logical	changes	in	the	fish	intestine	
after	 exposure	 to	 high	 levels	 of	
LAB.	The	result	of	LAB	exposure	
to	the	intestine	is	of	high	impor-
tance	 as	 translocation	 and	 cell	
damage	 have	 been	 proposed	 as	
important	criteria	when	evaluating	
46 | InternatIOnal AquAFeed | September-October 2013
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FIAAPisland:Layout 1 30/8/13 14:26 Page 1
the	use	of	probiotics	in	endothermic	animals	
as	well	as	in	fish.	Recently,	the	effect	of	ex	vivo	
LAB	exposure	on	the	gut	microbiota	in	fish	
was	documented,	but	to	the	authors’	knowl-
edge	the	effect	of	prebiotic	supplementation	
and	ex	vivo	LAB	exposure	of	the	fish	intestine	
has	not	been	investigated.
The	 culturable	 bacterial	 levels	 recovered	
on	 TSAgs	 plates	 from	 groups	 exposed	 to	
saline	 were	 relatively	 low,	 ranging	 from	 log	
1.72	to	2.34	CFU	g-1.	These	values	are	low	
compared	to	autochthonous	levels	previously	
reported	in	Atlantic	salmon	and	rainbow	trout	
Oncorhynchus mykiss.		This	is	likely	due	to	the	
thorough	 rinsing	 process,	 three	 times	 prior	
and	 three	 times	 post	 probiotic/saline	 expo-
sure.	 Culturable	 adherent	 bacteria	 in	 the	 PI	
observed	in	the	prebiotic	group	exposed	to	
saline	 (group	 5)	 was	 log	 2.34	 CFU	 g-1.	 The	
fact	that	the	value	from	this	group	is	higher	
than	 in	 control	 groups	 exposed	
to	saline	water	(log	1.72	and	2.08	
CFU	g-1),	might	be	due	to	a	feed-
ing	 effect	 of	 the	 prebiotic	 diet.	
However,	 this	 hypothesis	 merits	
further	investigations.
Investigations	of	the	qualitative	
and	quantitative	bacterial	compo-
sition	of	the	intestinal	microbiota	
were	based	on	the	study	of	168	
pure	 cultured	 bacterial	 isolates.	
These	 isolates	 were	 biochemi-
cally	 tested	 in	 order	 to	 obtain	 a	
general	 classification.	 From	 this	
classification	 111	 isolates	 were	
selected	 by	 the	 lottery	 method	
and	identified	by	16S	rRNA	gene	
sequencing	analysis.
The	 bacterial	 levels	 observed	
in	groups	exposed	to	saline	varied	
between	 segments	 and	 feeding	
regime.	 By	 comparing	 different	
feeding	groups	it	is	clear	that	the	
indigenous	 microbiota	 of	 the	 PI	
were	 affected	 by	 the	 diet,	 while	
the	effect	of	prebiotic	feeding	on	
the	 microbiota	 was	 less	 clear	 in	
the	DI.	In	the	intestine	exposed	to	
C. divergens	 the	 average	 number	
of	bacteria	were	higher	in	the	PI	
when	the	fish	were	fed	the	prebi-
otic	 diet	 compared	 to	 fish	 fed	
the	 control	 diet.	 Whether	 these	
findings	can	be	related	to	a	higher	
C. divergens	 colonization	 success	
in	prebiotic	fed	fish	merits	further	
investigations.
The	 bacterial	 composition	
from	the	PI	in	control	groups,	i.e.	
fish	fed	control	diet,	and	thereaf-
ter	exposed	to	saline	were	domi-
nated	by	members	of	a	few	gen-
era	(Psychrobacter,	Carnobacterium	
and	Pseudomonas).	Psychrobacter,	
Carnobacterium	and	Pseudomonas
spp.	are	commonly	reported	in	the	GI	tract	of	
fish,	and	these	bacteria	have	previously	been	
isolated	and	identified	from	the	GI	tract	of	sal-
monids.	Carnobacterium spp.	have	often	been	
reported	to	be	components	of	the	gut	micro-
biota	of	salmonids;	indeed,	C. maltaromaticum,	
C. mobile,	C. divergens	and	Carnobacterium spp.	
have	 been	 identified	 from	 Atlantic	 salmon.	
The	consistency	of	isolation	of	these	species	
indicates	that	these	might	be	common	core	
components	of	the	GI	microbiome	of	Atlantic	
salmon	and	are	likely	to	be	of	importance	to	
the	host.
The	 bacterial	 composition	 isolated	 from	
the	 DI	 in	 the	 first	 control	 group	 exposed	
to	 saline	 (group	 1)	 were	 dominated	 by	
Pseudoalteromonas	spp.	and	Psychrobacter spp.,	
while	 in	 the	 other	 control	 group	 (group	 3)	
Acinetobacter spp.	 and	 C. divergens	 were	 the	
dominant	bacteria	isolated.	All	of	these	listed	
bacteria	 have	 previously	 been	 isolated	 from	
the	 intestine	 of	 Atlantic	 salmon.	 The	 bacte-
rial	 composition	 of	 the	 PI	 observed	 in	 the	
prebiotic	 fed	 fish	 exposed	 to	 saline	 (group	
5)	 showed	 greater	 bacterial	 diversity	 than	
that	observed	from	control	fed	fish	exposed	
to	 saline	 (groups	 1	 and	 3).	 The	 majority	 of	
the	 bacteria	 from	 the	 PI	 of	 group	 5	 were	
C. divergens	 and	 Carnobacterium spp.,	 which	
together	accounted	for	81%	of	all	the	isolated	
bacteria.	The	two	other	bacterial	species	that	
were	isolated	from	this	group	were	Pantoea
spp.	 and	 an	 unidentified	 member	 of	 the	
class	Gammaproteobacteria.	The	abundance	of	
culturable	adherent	Carnobacterium spp.	(77%	
of	isolates	identified)	was	higher	in	the	DI	of	
the	prebiotic	fed	fish	(group	5),	compared	to	
control	groups	(group	1	=	0%	and	group	3	
=	36%).	These	results	suggest	that	the	prebi-
otic	supplementation	elevates	autochthonous	
September-October 2013 | InternatIOnal AquAFeed | 47
EXPERT	T●PIC
8 – 10 April 2014 . Bangkok International Trade & Exhibition Centre (BITEC), Bangkok, Thailand
New for 2014
Now including the first
ASEAN Feed Summit
Specialist conferences
The exhibition will be supported
by its own specialist conferences:
The FIAAP Conference 2014
Petfood Forum Asia 2014
Aquafeed Horizons Asia 2014
The Thai Feed Conference 2014
Biomass Pelleting Asia 2014
Supported by
The Thailand Convention
and Exhibition Bureau
Co-located with
FIAAP Asia 2014 and
GRAPAS Asia 2014
www.fiaap.com /www.grapas.eu
Contact details
For visitor, exhibition stand space and
conference information please visit:
www.victam.com
Asia’s largest exhibition
and conferences for
animal feed, aquafeed
and petfood production
VICTAM Asia 2014 is the largest trade show within South and South East Asia for displaying the latest
equipment and technology used in the production of animal feeds, aquafeeds and dry petfoods.
VICTAMisland:Layout 1 30/8/13 14:22 Page 1
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Carnobacterium spp.	levels,	particularly	in	the	
DI.	To	the	authors’	knowledge	there	is	very	
little	information	regarding	the	effect	of	prebi-
otics	on	carnobacteria	within	the	GI	tract	of	
fish.	However,	some	studies	suggest	that	the	
carnobacteria	populations	within	the	GI	tract	
of	 salmonids	 are	 effected	 by	 various	 dietary	
factors	such	as	krill	meal	and	oxytetracycline	in	
Atlantic	salmon	and	dietary	carbohydrates	in	
Arctic	charr	(Salvelinus	alpinus	L.).	However,	
it	was	observed	that	the	presence	of	dietary	
inulin	(a	prebiotic-type	carbohydrate)	tended	
to	 lower	 culturable	 autochthonous	 carno-
bacteria	levels	(by	ca.	90%)	in	the	hindgut	of	
Arctic	charr	and	also	elevated	the	proportion	
of	 C. maltaromaticum	 at	 the	 expense	 of	 C.
divergens.	These	findings	suggest	that	different	
prebiotics	may	influence	different	carnobacte-
ria	strains	in	different	fish	species.
In	all	groups	exposed	to	C. divergens	in	the	
ex	 vivo	 studies	 the	 same	 C. divergens	 strain	
was	 identified	 to	 dominate	 both	 the	 PI	 and	
DI	after	exposure.	C. divergens	levels	were	in	
the	range	of	104-106	CFU	g-1	intestine	which	
indicates	that	the	bacteria	are	able	to	populate	
and	potentially	colonize	the	intestinal	mucus	
and	 out-compete	 other	 adherent	 bacteria	
after	only	one	hour	of	exposure.	These	results	
are	in	accordance	with	corresponding	studies	
in	that	LAB	are	able	to	colonize	the	intestine	
of	Atlantic	salmon	after	one	hour	exposure.
Despite	the	plethora	of	information	avail-
able	on	the	prebiotic	efficacy	of	elevating	pro-
biotic	 colonization	 (i.e.	 synbiotics)	 in	 various	
terrestrial	species,	little	information	is	available	
in	 fish.	 Further	 studies	 should	 focus	 on	 this	
topic	as	the	present	study	demonstrated	that	
the	presence	of	the	dietary	prebiotic,	prebi-
osal®,	elevated	the	proportion	of	carnobac-
teria	from	71	-	81	percent	in	the	DI	(as	well	
as	 elevating	 total	 bacterial	 levels,	 effectively	
quadrupling	the	number	of	carnobacteria)	and	
from	33%	to	77%	in	the	PI	(although	the	total	
bacterial	population	was	lower).
The	histological	effect	of	exposing	the	GI	
tract	of	Atlantic	salmon	to	high	levels	of	the	
C. divergens	was	investigated	by	light	and	elec-
tron	 microscopy.	 Furthermore,	 the	 intestinal	
effects	of	feeding	a	prebiotic	diet	to	Atlantic	
salmon	were	evaluated.
Results	 from	 LM-investigations	 in	 the	
present	 study	 showed	 no	 apparent	 his-
topathological	 changes	 of	 the	 epithelium	 in	
the	 PI	 or	 DI,	 after	 exposure	 of	 C. divergens.	
In	 particular	 the	 micrographs	 demonstrated	
that	 enterocytes	 showed	 no	 signs	 of	 junc-
tional	rupture	from	the	basement	membrane	
which	is	in	contrast	to	observations	of	the	PI	
of	 Atlantic	 salmon	 after	 exposure	 to	 Vibrio	
anguillarum	and	A. salmonicida.
TEM	 observations	 confirmed	 the	 findings	
observed	in	LM	regarding	a	lack	of	histological	
changes.	 TEM	 revealed	 no	 observable	 dif-
ferences	 between	 the	 groups	 in	 respect	 to	
the	presence	of	cell	debris	in	the	lumen,	the	
amount	of	mucus,	the	number	bacteria	–	like	
particles	in	the	lumen	and	between	the	micro-
villi,	 disorganized	 microvilli	 and	 disintegrated	
tight	 junctions.	 The	 enterocytes	 within	 all	
groups	 displayed	 normal	 cell	 contacts	 with	
unaffected	tight	junctions	and	zona	adherens.	
The	fact	that	C. divergens	did	not	inflict	dam-
age	to	the	intercellular	unction	is	great	impor-
tantance	since	the	loosening	of	these	junctions	
contributes	to	a	paracellular	port	of	entry	for	
potential	pathogens.
Rodlet	 cells	 were	 present	 in	
large	 numbers	 in	 the	 PI	 of	 all	
groups,	while	in	the	DI	the	number	
observed	were	lower.	Since	groups	
exposed	to	C. divergens	did	not	dis-
play	any	clear	differences	in	number	
of	rodlet	cells	compared	to	groups	
exposed	 to	 saline,	 their	 presence	
in	those	groups	may	therefore	not	be	related	
to	 an	 immunological	 function	 towards	 the	
exposed	 bacteria.	 On	 the	 other	 hand,	 the	
role	of	rodlet	cells	as	immune	cells	and	their	
large	number	in	the	PI	compared	to	the	DI	
may	be	a	defense	function	towards	potential	
invading	 bacteria	 of	 the	 PI.	 Since	 the	 PI	 has	
been	 confirmed	 as	 being	 an	 infection	 route	
for	pathogenic	bacteria	by	several	studies,	the	
role	of	rodlet	cells	as	immune	cells	in	the	PI	
is	possible	and	warrants	further	investigation.
The	antimicrobial	effects	of	LAB	have	long	
been	utilized	in	food	preservation	by	fermenta-
tion	and	several	comprehensive	reviews	have	
been	published	on	the	ability	of	LAB	to	pro-
duce	proteinaceous	antimicrobial	substances.	In	
fish	studies,	the	antagonistic	effect	of	LAB	has	
been	carried	out	on	Gram-negative	fish	patho-
gens	such	as	V	anguillarum	and	A	salmonicida.	
In	 the	 present	 study	 strong	 growth	 inhibition	
of	Y.	rückeri	was	recorded	from	extracellular	
extracts	 from	 late	 exponential	 growth	 phase	
from	all	of	the	eleven	Carnobacteria	strains	iso-
lated	from	the	ex	vivo	experiments.	However,	
the	 ability	 of	 the	 isolated	 strains	 to	 inhibit	
growth	of	A. salmonicida ssp. salmonicida was	
only	 observed	 from	 one	 strain	 isolated	 from	
the	PI.	The	fact	that	only	one	(isolate	57)	of	the	
11	strains	displayed	inhibitory	effects	towards	
A. salmonicida	ssp.	salmonicidais	in	accordance	
with	the	results	of	Ringø	who	observed	a	lack	
of	antagonism	when	challenging	A. salmonicida
ssp. salmonicida to	 extracellular	 extracts	 from	
C. divergens	strain	Lab01.	These	results	indicate	
that	 the	 production	 of	 extracellular	 products	
only,	 might	 not	 be	 sufficient	 for	 strains	 of	 C.
divergens	in	late	exponential	growth	phase,	to	
inhibit	growth	of	A. salmonicida	ssp.	salmonicida.
The	 positive	 control	 bacteria,	 C. inhibens
which	Jöborn	et	al.	reported	to	display	antago-
nistic	 effect	 against	 A. salmonicida,	 showed	 no	
sign	 of	 antagonism	 in	 the	 present	 study.	 This	
observation	therefore	indicates	that	antagonisitic	
activity	of	C. inhibens is	only	effective	when	cells	
are	actively	incubated	together	or	that	antago-
nistic	extracellular	products	are	only	produced	
by	C. inhibens in	the	presence	of	A. salmonicida.
The	ability	of	C. divergens	as	useful	probiot-
ics	with	effects	against	Y.	rückeri	and	A. salmoni-
cida	have	previously	been	reported	in	vivo	and	
in	vitro.	Kim	and	Austin	observed	that	dietary	
provision	 of	 C. divergens	 strain	 B33,	 isolated	
from	 the	 intestine	 of	 healthy	 rainbow	 trout,	
increased	 survival	 of	 rainbow	 trout	 against	
A. salmonicida	and	Y.	rückeri	challenge	by	60	
percent	compared	to	the	control	group.	Even	
though	strains	of	C. divergens	show	antagonistic	
effects	 against	 pathogens,	 the	 precise	 mecha-
nism	 of	 action	 of	 antimicrobial	 compounds	
isolated	from	fish	remains	unclear,	but	sugges-
tions	about	their	ability	of	penetrating	cell	walls	
by	forming	pores	and	channels,	thus	rendering	
it	 more	 fragile	 and	 incapable	 of	 carrying	 out	
normal	metabolism	has	been	proposed.
In	 order	 to	 confirm	 the	 in	 vitro	 probi-
otic	effect	of	C. divergens	against	Y.	rückeri	in	
Atlantic	salmon,	further	investigations	should	
therefore	 include	 in	 vivo	 challenges	 studies.	
By	further	applying	electron	microscopy,	the	
physical	interference	mechanisms	between	C.
divergens	and	Y.	rückeri	in	the	GI	tract	might	
be	observed.
Acknowledgements
The	 authors	 thank	 the	 technical	 staff	 at	
EWOS	Innovation	AS	for	feed	manufacture,	
analysis	 and	 running	 the	 feeding	 trial	 and	
thank	 Dr.	 Sigmund	 Sperstad	 and	 Dr.	 Chun	
Li,	 Norwegian	 College	 of	 Fishery	 Science,	
University	 of	 Tromsø	 for	 their	 inestimable	
help	during	16S	rRNA	gene	sequencing	and	
in	 vitro	 growth	 inhibition.	 We	 also	 thank	
Randi	 Olsen	 and	 Helga	 Marie	 By	 at	 the	
EM	 department	 at	 University	 of	 Tromsø,	
and	 Anne	 Nyhaug	 at	 Molecular	 Imaging	
Centre,	Institute	for	Biomedicine,	University	
of	 Bergen	 for	 their	 inestimable	 help	 during	
light	 and	 electron	 microscopy	 analysis.	 This	
study	was	partially	supported	by	grants	from	
the	 Norwegian	 MABIT-program	 (project	
number	AF0038).
"The histological effect of exposing the
GI tract of Atlantic salmon to high levels
of the C. divergens was investigated
by light and electron microscopy"
This	article	was	originally	published	on	
48 | InternatIOnal AquAFeed | September-October 2013
EXPERT	T●PIC
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LINKS
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The potential of
microalgae meals
– in compound feeds for aquaculture
Understanding ammonia
in aquaculture ponds
Volume 16 Issue 5 2013 - sePTemBeR | oCToBeR
INCORPORATING
fIsh fARmING TeChNOlOGy
EXPERT TOPIC
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EXPERT TOPIC 1305- SALMON

  • 1. September | October 2013 EXPERT TOPIC - SALMON The International magazine for the aquaculture feed industry International Aquafeed is published six times a year by Perendale Publishers Ltd of the United Kingdom. All data is published in good faith, based on information received, and while every care is taken to prevent inaccuracies, the publishers accept no liability for any errors or omissions or for the consequences of action taken on the basis of information published. ©Copyright 2013 Perendale Publishers Ltd.All rights reserved.No part of this publication may be reproduced in any form or by any means without prior permission of the copyright owner. Printed by Perendale Publishers Ltd. ISSN: 1464-0058 INCORPORATING f ish farming technolog y
  • 2. Innovations for a better world. Bühler AG, Feed & Biomass, CH-9240 Uzwil, Switzerland, T +41 71 955 11 11, F +41 71 955 28 96 fu.buz@buhlergroup.com, www.buhlergroup.com Fatten up your bottom line. Bühler high-performance animal and aqua feed production systems are used by leading companies around the world. These producers know they can rely not just on the technology itself, but also on the support that accompanies it. A service combining local presence with global expertise both lowers feed mill operating costs and increases capacity utilization. To find out more, visit www.buhlergroup.com
  • 3. 36 | InternatIOnal AquAFeed | September-October 2013 EXPERT T●PIC Welcome to Expert Topic. Each issue will take an in-depth look at a particular species and how its feed is managed. SALMON EXPERT TOPIC
  • 4. World view According to statistics from the Global Salmon Initiative (GSI) approximately 60 percent of the world’s salmon is farmed. Figures show that in 2011, wild-caught salmon reached approximately 930,000 tonnes. A drop in the ocean compared to the 1,600,000 tonnes produced by aquaculture. Salmon belong to a family of fish known as Salmonidae and based on their distribution, are further classified in to two main genera; Atlantic dwellers (Salmo) and Pacific Ocean based species (Oncorhynchus). The distinguish- ing factor in this classification is that unlike the Salmo genus, species belonging to the Oncorhynchus genus die after spawning. Due to complex production needs, wide water temperature ranges and biological conditions, farm- ing of Atlantic salmon - the most popular species of Salmonidae - is dominated by just a handful of countries. Currently, the EU, USA and Japan have the largest salmon aquaculture markets. Atlantic salmon is pisciverous and there- fore requires a diet rich in protein and lipids. Farmed fish are usually fed a combination of fish meal and fish oil and although the waste produced from fish processing can be used in certain components of fishmeal production, the risk of transferring disease means it cannot be used directly in fish feed. There is on-going research into supplementing fish feed with plant or microbe-based products, though currently no supplement has been found for pisciverous species (FAO). www.globalsalmoninitiative.org www.fao.org/fishery/en 1 Iceland The Icelandic Ministry of Fisheries and Agriculture states that salmon farming first began in Iceland at the beginning of the 19th century, with the first attempts to rear salmon fry occurring in 1961. The first land-based salmon production farm was developed in 1978 and by the late 1980s bigger farms were being constructed. Between 1984 and 1987, salmon eggs were imported from Norway. At this time, there were large investments in the production of salmon smolts for export. Later, ocean ranching and cage and land- based farming attracted interest among investors. Ocean ranching involves releas- ing young reared smolts into rivers and streams. The young smolts use the coastal environment to mature for around a year before returning at which point they are harvested. The country owes much of its farming capabilities to its climate. With unpolluted seas and an abundance of clear water, aquaculture conditions are regarded as among the best in the world in Iceland. In 2007, 600 tonnes of Atlantic salmon were exported. By 2009, there were about 45 registered fish farms on the island. Figures show that of these, about 30 were producing juveniles, mostly for Salmonid on-rearing. According to figures produced September-October 2013 | InternatIOnal AquAFeed | 37 EXPERT T●PIC 21 3 4 5 6
  • 5. by the Directorate of Fisheries, the facilities released around 6 million salmon smolts with an annual return of around 500 metric tonnes. In Iceland, selective breeding and production of healthy Atlantic salmon eggs are supplied on a year round basis. In recent years, major fishery operations have moved into aquaculture, investing in both research and develop- ment and the sustainable farming of salmon. www.fisheries.is/aquaculture/ species/atlantic-salmon 2 Faroe Islands Despite its small size, the Faroese aquaculture industry produces top quality Atlantic salmon. With steady ocean tempera- tures and strong currents, The Faroe Islands is a prime location for premium salmon production. As a result of this, wild Atlantic salmon from all over northern Europe make their way north of the Faroe Islands to feed. Fish farming in the Faroe Islands began in the 1970s. Nowadays, Faroese fish farming today, which takes place in ocean- based fjords, consists primarily of Atlantic salmon and large rainbow trout and has become a significant component of Faroese economic activity over the past two decades (NASCO). http://salmon-from-the-faroe- islands.com 3 Scotland Scotland, which alongside Norway pioneered salmon farming in the 1960s, is now second only to Norway in European production. As smolts are not indigenous to the Shetland Islands, they were originally imported from Norway to establish farms. Atlantic salmon aquaculture in Scotland has increased from 14 tonnes in 1971 to 154,164 tonnes in 2010 and Scotland is now the largest farmed salmon producing country in the EU. It is estimated that the worldwide retail value of Scottish farmed salmon is over GB£1billion. The USA is the largest export market for Scottish farmed salm- on, closely followed by France. www.scottishsalmon.co.uk 4 Norway The development of commer- cial aquaculture in Norway began in 1970. At present, intensive farming of Atlantic salmon in the country is substantial, accounting for more than 80 percent of total Norwegian aquaculture produc- tion (FAO). According to the international environmental organisation, The Bellona Foundation, an average of 20 percent of the oil content in fish feed in Norway comes from vegetable oils. www.fhl.no/english/norwegian- seafood-federation-article15-14. html i i i i i i iiiiiiiii i iiiiiiiii iiiiiiiii i i i i i i i i i iiiiiiiii i iiiiiiiii iiiiiiiii i i i AQUACULTURE NEWS GLOBAL http://www.perendale.com MOBILE You can now find International Aquafeed content on your mobile phone, including full feature articles (not to mention a whole host of other Perendale content - including The International Milling Directory). Simply visit www.perendale.com on your mobile to launch the our app - it’s all free. EVENTS Our Events register contains all the information that you need about all of the up-coming industry events, and forms an essential part of our app for all industry professionals Get your f reeAPPher e Get your f reeAPPher e http://www.perendale.com 38 | InternatIOnal AquAFeed | September-October 2013 EXPERT T●PIC
  • 6. 5 Tasmania Salmon farming commenced in Tasmania in the mid-1980s after a report to the Tasmanian Fisheries Development Authority concluded that a salmon farm- ing industry could be successfully developed on the island state. As a result, in 1984 fertilised Atlantic salmon eggs were pur- chased from the Gaden Trout Hatchery, Jindabyne, New South Wales, Australia from stock origi- nally imported in the 1960s from Nova Scotia, Canada. A sea farm was then established at Dover in the south of Tasmania and a hatchery developed at Wayatinah in the central highlands. The first 53 tonne commer- cial harvest of Atlantic salmon occurred between 1986 -1987. Nowadays, the Tasmanian indus- try now produces almost 40,000 tonnes per annum. Nearly 93 percent of Tasmanian salmonid production was sold in the domestic market in 2006. (DPIW) www.tsga.com.au 6 New Zealand New Zealand King Salmon's plans for marine farms in Marlborough Sound, New Zealand, may get the go ahead after the High Court dismissed an appeal against them. The decision of the Board of Inquiry, reached in February 2011, to approve four new salmon farming sites in the Marlborough Sounds was appealed by two parties and that appeal was heard at the High Court in Blenheim in May. The news has been wel- comed by the government, “The impacts of these new marine farms on the impor- tant recreation and conserva- tion values of the Marlborough Sounds are small. This is about use of only six hectares of more than 100,000 hectares of water space in the Sounds,” said Conservation Minister Dr Nick Smith. “We are a Bluegreen Government that wants jobs and development but also wants to ensure we look after our envi- ronment and great kiwi lifestyle. This decision confirms this bal- anced approach.” “Primary industries are vital for economic growth in our regions, and aquaculture plays an impor- tant role in the Marlborough economy. I welcome the news that extra jobs will be created as a result of these new farms,” said Primary Industries Minister Nathan Guy. “This decision is another step forward for New Zealand King Salmon in its plans to establish four new farms, delivering an additional $60 million a year in export income and providing 200 new jobs.” NUTRACEUTICALS AND PHYTOBIOTICS FOR AQUACULTURE Growth promoters Anti-parasites Attractants Hepatoprotectors Antioxidants Detoxifiers Chelated minerals ADDITIVES FOR AQUACULTURE SOLUTIONS C/ San Romualdo 12-14 • 28037 Madrid (Spain) +34 902 15 77 11 • +34 91 725 08 00 liptosa@liptosa.com • www.liptosa.com September-October 2013 | InternatIOnal AquAFeed | 39 EXPERT T●PIC
  • 7. Global salmon farming industry joins forces with new sustainability initiative by Alice Neal, Associate editor, International Aquafeed magazine T he Global Salmon Initiative (GSI) unites 15 global farmed salmon producers committed to greater industry cooperation and transpar- ency, in order to achieve significant and con- tinuous progress in industry sustainability. Together, these 15 companies represent 70 percent the global salmon industry, mean- ing the initiative could have a real impact on salmon aquaculture. The major salmon producing countries of Chile, Norway, Scotland, the Faroe Islands and Canada are all represented in the GSI. Ygnve Myhre, CEO, SalMar, Norway and GSI member, said, “While we have been mak- ing attempts at sustainability, salmon farming is a young industry and we recognise that more needs to be done and we can do better. “We know it will take time and will be a continuous process, but through the GSI we have committed to the significant improve- ment that is needed. This initiative is about significant improvement in sustainability. It is not about satisfaction with the status quo.” The GSI will achieve its aim through global collaboration and research, pooling of resources and sharing knowledge. “What is different is that as the GSI, the companies have committed to helping each other towards improved sustainability. It’s about cooperation, not competition,” said Myhre. Alfonso Marquéz de la Plata, chair of the GSI standards committee and CEO, Empresas AquaChile S.A., Chile, said, “We cannot choose between a healthy environment and healthy food, we need both. This initiative is a practical approach to achieving both. While meeting the standard at a global level will be a significant challenge, this is a major commit- ment from the salmon farming industry and we hope that through GSI collaboration, we can get there together.” The initial impetus for the GSI came from a meeting in 2011 which was attended by a number of CEOs. At that meeting, the CEOs heard about significant progress other industries had made in sustainability by work- ing together. That group of CEOs decided to meet again and invite other CEOs and in due course it was agreed to form the GSI. Currently, the GSI is focusing on biosecu- rity, feed and nutrition and meeting industry standards. In terms of feed ingredients, the GSI is keen to find sources that do not put further stress on marine resources. The GSI is con- sidering utilizing by-products and is working closely with the FAO to assess availability of these resources. The GSI has chosen the Aquaculture Stewarship Council (ASC) as its accreditation body and aims to have all its members meet the ASC Salmon Standard by 2020. Chris Ninnes, chief executive, ASC said, “GSI’s commitment to significantly improving the sustainability of salmon farming mirrors ASC’s aim to transform aquaculture towards environmental sustainability and social respon- sibility. “A commitment at this scale presents an unprecedented opportunity to realise a meaningful reduction in the environmental and social impact of the sector. It is a huge statement of leadership intent to tackle these issues.” The initiative ties in with ASC plans to launch a certified salmon to the market in early 2014. “I consider it extremely positive that a major proportion of the salmon farming industry is voluntarily seeking to become environmentally responsible and to do this in a transparent way so that all can see the reduction of industry impact. “Transparency is one of the corner- stones of ASC. The standards require an unprecedented amount of public disclosure of farm-level data from certified farms that are currently not publicly available in most cases. GSI members are aware of these requirements. However, as an industry-led initiative and by working together members are well placed to meet them as they achieve certification.” The initiative has been warmly welcomed by the aquaculture industry. Mary Ellen Walling, executive director, British Columbia Salmon Farmers’ Association, Canada said, “This initiative recognises that there is no limit to how sustainable you can be. You don’t reach the highest level and stop; there is always room for improvement, always more you can learn. This collaboration will benefit the industry in BC and around the world.” GSI member companies include Acuinova Chile; Bakkafrost; Blumar; Cermaq; Compañía Pesquera Camanchaca; Empresas AquaChile; Grieg Seafood; Lerøy Seafood Group; Los Fiordos; Marine Harvest; Norway Royal Salmon; SalMar; Multiexport Foods SA; The Scottish Salmon Company; Scottish Sea Farms. More InforMatIon: www.globalsalmoninitiative.org 7 Ygnve Myhre, CEO, SalMar, Norway and GSI member, “While we have been making attempts at sustainability, salmon farming is a young industry and we recognise that more needs to be done and we can do better" Chris Ninnes, chief executive, ASC, “GSI’s commitment to significantly improving the sustainability of salmon farming mirrors ASC’s aim to transform aquaculture towards environmental sustainability and social responsibility" 40 | InternatIOnal AquAFeed | September-October 2013 EXPERT T●PIC
  • 8. September-October 2013 | InternatIOnal AquAFeed | 41 EXPERT T●PIC instantalgae.com The cleanest, most effective, and easiest-to-use feeds in aquaculture ©2012-2013 Reed Mariculture, Inc. All rights reserved. Instant Algae is a registered trademark of Reed Mariculture Inc. Aquaculture Feeds Perfected TOLL-FREE (US): 877-732-3276 | www.reed-mariculture.com Reed Mariculture Inc. The “scientist farmers” of Reed Mariculture Inc. (RMI) pioneered whole-cell, easy-to-use feeds made from live algae. The next step was making “perfect” feeds: each formulated with specific nutritional profiles for a diversity of aquacultured species and tailored for each stage of the life cycle. Optimized Feeds for Every Hatchery’s Production Needs Using rigorous scientific analysis, RMI has created and continues to develop unique microalgae formulations for fish, bivalve, and shrimp hatcheries worldwide. Tel: +31 70 3074120 www.gmpplus.org Early warning Traceability Monitoring Process control Chain approach Prerequisites Product standards HACCP ISO GMP+ Feed Certification scheme At this moment, over 12,000 companies in the feed chain, located in over 65 countries worldwide, are GMP+ FSA certified. 6th Protein Summit 2013 Platform for Future supply, Health & Technology For information on partnerships & exhibiting, contact: Gerard Klein Essink gkleinessink@bridge2food.com | ph: +31 30 225 2060 | www.bridge2food.com 24 & 25 September 2013, Rotterdam International Speakers from Unilever, FAO, Rabobank, Cosucra,TNO, Rousselot, Innova Market Insights, Koch Membrane Systems, Bühler, Tereos Syral,Wageningen University,True Price and many more... THE GLOBALG.A.P. AQUACULTURE STANDARD Food Safety and Sustainability at Every Stage of Production NEXT STOP: ANUGA 5-9 October 2013, Cologne, Germany Boulevard Mitte, Boulevard 045 NEXT STOP: SEAFOOD BARCELONA 22-24 October 2013, Barcelona, Spain Hall 1, Booth No. 3026 Check out our website for events happening near you! www.tour2013.org processes such as mixing and steam modulat- pelleting period the fine grain can fill the will make the material speed fast, reduce September-October 2013 | InternatIOnal AquAFeed | 11 Extruder OEE for the Production of Fish FeedExtruder OEE for the Production of Fish Feed AMANDUS KAHL GmbH & Co. KG, Dieselstrasse 5-9, D-21465 Reinbek / Hamburg, Phone: +49 40 727 71 0, Fax: +49 40 727 71 100, info@amandus-kahl-group.de www.akahl.de
  • 9. Evaluation of prebiotic and probiotic effects on the intestinal gut microbiota and histology of Atlantic salmon by Mads Kristiansen, Einar Ringø Norwegian College of Fishery, Faculty of Bioscience, Fisheries and Economics, University of Tomso, Norway- Aquamedical Contract Research, Vikan, Norway; Daniel Merrifield, Aquaculture and Fish Nutrition Research Group, School of Biomedical and Biological Sciences, University of Plymouth, UK; Jose Gonzalez Vecino, EWOS Innovation AD, Dirdal, Norway and Reidar Myklebust, Molecular Imaging Center, Institute of Biomedicine, University of Bergen, Norway T oday it is generally accepted that the three major routes of infection in fish are through: a) skin, b) gills and c) the gastrointestinal (GI) tract. The GI microbiota, including lactic acid bacteria (LAB), have been suggested to be important in fish health and it has been sug- gested that the autochthonous gut bacterial community may be responsible for control- ling the colonization of potential pathogens by adhesion competition and production of antagonistic compounds. If the GI tract is involved as an infection route, scientists have address whether probiotic bacteria are able to adhere to and colonise mucosal surfaces and outcompete endogenous bacteria and pathogens. Investigating these topics effectively in in vivo models can be difficult as they are time consuming and costly. Furthermore, as the EU has recommend reductions of in vivo experiments and the numbers of animals used in experiments (Revision of the EU directive for the protection of animals used for scien- tific purposes [Directive 86/609/EEC]; 8th of September 2010), attempts have been made to use alternative ex vivo methods (e.g. the Ussing chamber, everted sack and intestinal sack methods). The first aim of the present study was to investigate possible effects of a prebiotic feed on epithelial histology and indigenous GI tract microbiota in the proximal intes- tine (PI) and distal intestine (DI) of Atlantic salmon. Furthermore, the same effects, including morphological changes of epithelial cells after ex vivo exposure of the intestinal tract to Carnobacterium divergens, a probiotic bacterium, are investigated by light micros- copy and electron microscopy. The result of Carnobacterium exposure is of high impor- tance to evaluate as translocation and cell damage are negative criteria when evaluating the use of probiotics in endothermic animals as well as in fish. The second aim of the present study was to evaluate the bacterial community of the PI and DI of salmon fed control or prebiotic diets, before and after ex vivo exposure to probiotic bacteria, in order to investigate if the indigenous GI tract microbiota is modulated by the different treatments. Finally, we addressed the issue as to whether carnobacteria isolated in the ex vivo studies were able to inhibit in vitro growth of the pathogenic bacteria Yersinia rückeri and Aeromonas salmonicida ssp. salmonicida. Fish husbandry Two hundred and forty vaccinated Atlantic salmon (Salmo salar L.) were held at the EWOS Innovation AS Research Station, Dirdal, Norway. The average weight at the start of the experiment was 350 g. Two hun- dred and forty fish were distributed equally (i.e. 40 fish per tank) into six tanks supplied with 500 litres of seawater and two diets were offered (i.e. triplicate tanks per diet). The control diet and prebiotic diet had the same ingredient composition (Table 1) and differed only in the inclusion of 0.2 percent EWOS prebiosal® in the prebiotic diet. EWOS prebiosal®, is described as a multi-com- ponent prebiotic specifically designed for salmonid fish; more detailed information about the composition of EWOS prebi- osal® is not available for commercial reasons. Feeding was conducted twice a day with duration of 2.5 hour between each feeding for a period of 15 weeks. During the feeding period the water temperature and salinity ranged, with season, from 5.3-12.9 °C and 26.7-30.9 gl-1. The samplings were carried out at two different points: at the start (week 0) and at the end of the trial (week 15). An overview of the different treatments and groups is listed in Table 2. Probiotic bacteria The probiotic bacterium used in this experiment was Carnobacteriumdivergens strain Lab01 originally isolated from juvenile Atlantic salmon fed a commercial diet. The bacteria were stored in glycerol-containing cryotubes at -80 °C and inoculated into tryptic soy broth (Difco, USA) with glucose (10 g l-1) Table 2: Experimental treatments applied to Atlantic salmon intestine fed control and prebiotic diets treatment grouop type of treatment type of feed Week of feeding 1 Saline Control 0 2 C. divergens1 Control 0 3 Saline Control 15 4 C. divergens2 Control 15 5 Saline Prebiotic 15 6 C. divergens2 Prebiotic 15 table 1: Dietary formulation and chemical composition of the experimental diets % Fishmeal 31.25 north atlantic fish oil 13.50 Vegetable protein concentrates1 25.76 Vegetable oil 14.01 Carbohydrate-based binders2 13.00 Micro premixes3 2.48 Chemical composition (%) Moisture 6.9 Protein4 44.2 Fat4 29.1 nFe4 1.6 ash4 8.4 1 Incudes soy protein concentrate, pea protein concentrate, wheat gluten, sun flower meal. 2 Includes wheat and pea starch 3 Includes vitamin, mineral, amino acid and pigment premixes and 0.2% eWoS prebiosal® added to the prebiotic diet (at the expense of an equal volume of carbohydrate-based binders) 4 dry weight basis 8 42 | InternatIOnal AquAFeed | September-October 2013 EXPERT T●PIC
  • 10. and NaCl (10 g l-1), viz. TSBgs medium. After approximately 24 hours of pre- inoculation at room temperature with an agitation of 190 rpm, 1 percent of the pre- culture was trans- ferred to new TSBgs medium and growth (same growth condi- tions as above) was measured by optical density for evaluation of the growth cycle (data not shown). Bacterial viability was confirmed by plating bacterial suspensions on tryptic soy agar (Difco) + glucose (15 g l-1) and NaCl (15 g l-1) (TSAgs) plates. The results obtained from this study were used to calculate the bacterial concentra- tion in the experi- mental bacterial solu- tions. Table 3: Cultruable heterotrophic bacterial levels (log CFU g-1 wet weight) and identity (as determinedfrom phenotypic characteristics and 16S rRNA sequence analysus) obtained from different groups after the ex vivo assay Proximal intestine Distal intestine Group tVC (log CFU g-1) no Bacteria % tVC (log CFU g-1) no Bacteria % 1 1.72 12 Psychrobacter aquimaris - 16.7% Psychrobacter glancincola - 16.7% Psychrobacter spp - 66.6% 1.73 11 Psychrobacter glancincola - 9.0% Psychrobacter spp - 36.3% Pseudoalteromonas - 36.3% Brevibacterium sp. - 9.0% Moraxella sp. - 9.0% 2 6.04 7 Carnobacterium divergens - 100% 5.56 7 Carnobacterium divergens - 100% 3 2.08 17 Carnobacterium divergens - 70.6% Pseudomonas fluva - 17.6% Pantoea spp - 5.9% Gammaproteobacteria - 5.9% 2.69 15 Carnobacterium divergens - 33.3% Pseudomonas fluva - 6.6% Shewanella baltica - 6.6% Vibrio splendidus - 13.3% Gammaproteobacteria - 40% 4 6.26 8 Carnobacterium divergens - 87.5% Pseudomonas spp - 12.5% 6.68 8 Carnobacterium divergens - 100% 5 2.34 47 Carnobacterium divergens - 29.8% Carnobacterium spp - 51% Pseudomonas antartica - 2.1% Pseudomonas korensis - 2.1% Enterbacter hormaechi - 8.5 Gammaproteobacteria - 4.3% Uncultured bacterial clone CK20 - 2.1% 1.71 44 Carnobacterium divergens - 25% Carnobacterium spp - 52.3% Pantoea spp. - 18.2% enterobacter spp. - 4.5% 6 6.63 25 Psychrobacter marincola - 4% Pseudomonas sp - 8% Carnobacterium divergens - 20% Carnobacterium spp - 68% 6.7 17 acinetobacter sp. - 5.6% Carnobacterium divergens - 94.2% *N = number of isolates identified September-October 2013 | InternatIOnal AquAFeed | 43 EXPERT T●PIC
  • 11. Ex vivo exposure to bacteria Three fish were randomly selected from two of the tanks fed each diet and killed with a blow to the head. The entire intestine, from the last pyloric caeca to the anus, was removed aseptically and intestinal content was gently squeezed out, before the intestine was flushed three times with sterile saline solution (0.9% NaCl), in order to remove the allochthonous gut bacteria. The posterior end was tightly tied with cotton thread before filling (ca. 1.5 ml) with the appropriate assay solution (Table 2), tying the anterior end and suspending the sealed intestinal tube in sterile saline solution. The intestinal sacks were then incubated at 10 ºC for one hour. After incubation the intestine was cut open, the contents discarded and flushed three times with sterile saline solution. Post ex vivo bacterial assays Samples for bacteriology from each seg- ment from the first sampling point (groups 1 and 2) were prepared by homogenizing 1 g of intestinal tissue (PI or DI) in 1 ml sterile saline using a Stomacher (Seaward Laboratory, UK). Gut samples for bacteriology from the second sampling (groups 3-6) were prepared by gently scraping off mucus with a sterile scalpel. Thereafter, the segments were weighed. Both the homogenates and mucus were used to create serial ten-fold dilutions which were spread plated (100 μl) on TSAgs plates and incubated at 6 ºC for up to 1 week to deter- mine viable counts of culturable heterotrophic bacteria. After sub-culturing on TSAgs to achieve pure cultures, phenotypic bacterial identifica- tion (Gram stain, colony morphology, oxidase - and catalase tests and glucose fermentation) was carried out on random colonies from all plates containing between 10-300 colonies. A total of 168 bacterial strains were isolated from the two sampling points. 16S rRNA characterization of isolates The bacterial DNA was isolated following the protocol from a commercial kit (DNeasy Blood and Tissue, Qiagen, USA). Specific treatment for Gram-positive and Gram- negative isolates was carried out according to the manufacturer’s instructions. Template- DNA was diluted to a concentration of approximately 20-30 ng μl-1 using Milli-Q water. The PCR mix constituted of 8 μl of template-DNA, 36 μl Milli-Q water, 5 μl 10x buffer F511, 0.25 μl dNTP, 0.25 μl27F forward primer, 0.25 μl 1492R reverse primer and 0.25 μl DNA-polymerase yielding a total volume of 50μl. PCR thermal cycling consisted of initial denaturation of 94 ºC, followed by 35 cycles of 94 ºC for 20 s, 53 ºC for 20 s and 72 ºC for 90 s with a final extension step of 72 ºC for 7 min. To verify PCR products, samples were run on gel electrophoresis. The PCR-products were desalted by mixing 20 μl of PCR-product with 40 μl of 100 percent ethanol and 2 μl of 3M NaOAc (pH 5.3) and vortexed well. Samples were then incubated on ice for 30 min followed by centrifugation for 20 minutes at 14,000 gusing an Eppendorf Microcentrifuge Model 5417R. The superna- tant was removed and pellet washed in 100 μl of 80 percent ethanol and centrifuged for another 5 minutes at 14,000 g. The super- natant was removed and the pellet dried at room temperature for 60 minutes. The pellet was then resuspended in 30 μl of Milli-Q water. Purified PCR products were sequenced as described elsewhere. The resultant nucleotide sequences were submitted to a BLAST search in GenBank (http://blast.ncbi.nlm.nih.gov/Blast.cgi) to retrieve the closest known alignment identi- ties for the partial 16S rRNA sequences. Gene sequences that showed higher than 95 percent similarity to a genus or species in GenBank were categorized accordingly. In vitro growth inhibition of pathogens by LAB isolated form the ex vivo studies Eleven randomly chosen LAB isolated from the intestinal tract after ex vivo exposure and one type strain, Carnobacterium inhibens (CCUG 31728), were tested for antagonistic effects against two different fish pathogens. The pathogenic bacteria used in the present investigation were Yersinia rückeri (CCUG 14190) and Aeromonas salmonicida ssp. salmo- nicida (Ass 4017). C. inhibens (CCUG 31728) was used as a positive control as previous investigations have demonstrated that this strain has an inhibiting effect towards V. anguillarum and A. salmonicida. In vitro growth inhibition of the two fish pathogens by the twelve LAB was tested using a microtitre plate assay described in detail by Ringø and co-authors. This method has been used in two recent studies. The pathogenic bacterial levels at the start of assays were 106 cells ml-1. Positive in vitro growth inhibition was defined when no growth (turbidity < 0.05 at optical density; OD600 nm) of the pathogen 44 | InternatIOnal AquAFeed | September-October 2013 EXPERT T●PIC
  • 12. was detected. Sterile growth media and the pathogens were used as controls. Growth (at OD600) of the patho- gens without addition of sterile supernatant of LAB was approximately 0.6. Measurements were carried out each hour using an automatic plate reader (Bioscreen C, Labsystems, Finland). Histology Samples for light microscopy (LM) and transmission electron microscopy (TEM) were collected by excising approximately 5 mm from the posterior part of the PI and DI. The samples were immedi- ately fixed in McDowells fixative and stored at 4 ºC until processing. TEM and LM sam- ples were processed as described elsewhere Morphological observations were made from multiple micrographs (8) from each intestinal region from two fish within each group. The following morphological parameters were observed; detached microvilli, enterocytes detached from the basal membrane, disinte- grated cell junctions, presence of goblet cells, presence of absorptive vacuoles and presence of intraepithelial lymphocytes. Results Bacterial levels after ex vivo exposure The adherent bacterial levels, as deter- mined by using a stomacher (groups 1 and 2) or by the collection of mucus (and subsequent weighing of the segments the mucus was removed from) (groups 3-6), did not seem to differ which indicates that the different sam- pling methods were similarly effective. Table 3 presents an overview of the autochthonous bacterial levels isolated from each segment and each group exposed to either saline or C. divergens. All values are expressed as log col- ony forming units (CFU) g-1. Autochthonous bacteria isolated from intestines of fish fed the control diet at the experimental start and exposed to saline was approximately log 1.7 CFU g-1 in both PI and DI, while the number of bacteria isolated from intestines of fish exposed to C. divergens was log 6.04 CFU g-1 in PI and log 5.56 CFU g-1 in DI. After 15 weeks of feeding slightly higher values were present in PI of fish fed the prebiotic diet post exposure to saline or C. divergens compared to fish fed the control diet. Indeed, the bacterial level in the prebi- otic fed fish intestine exposed to C. divergens (group 6) was 234 percent greater than that of the control fed fish intestine exposed to C. divergens (group 4). In both dietary groups, a similar bacterial level (~log 6.70 CFU g-1) was detected in DI exposed to C. divergens. However, a higher bacterial level (log 2.69 CFU g-1) was observed in the DI of control fed fish exposed to saline than that of prebi- otic fed fish (log 1.71 CFU g-1). Isolation and identification of bacteria after ex vivo exposure A total of 168 bacterial strains were isolated from the two samplings. Among these, 40 isolates were isolated from the first sampling point and 128 isolates were isolated from the second sampling point. All isolates were tested for morphology and biochemical properties (colony morphology, Gram-testing, oxidase - and catalase tests and glucose fermentation). One hundred and eleven isolates were further identified by partial sequencing of the 16S rRNA gene. Isolates not identified by 16S rRNA gene sequencing but showing similar biochemical and physiological properties to those isolates identified by 16S rRNA genes were defined as ‘-like’. Table 3 provides an overview of the different bacterial species isolated in each experimental group. Week 0 Microbiota of fish fed control diet and intestines exposed to saline (group 1): Analysis of the adherent microbiota in the PI of fish fed the control diet and exposed to sterile saline (group 1) revealed that all isolates belonged to the genus Psychrobacter. Of the 12 strains isolated from the PI of this group, two strains showed 96 percent similarity to Psychrobacter aquimaris, two strains were identified as Psychrobacter gla- cincola while eight strains were identified as Psychrobacter spp.- like. The DI of fish exposed to saline at the first sampling point showed a more diverse com- munity which consisted of 4 different bacterial genera. Of these, ten strains were indentified to genus level and one strain was identified to species level. The bacteria identified to genus level belonged to Pseudoalteromonas, Psychrobacter, Moraxella and Brevibacterium, while the last strains showed high similarity (98 percent) to Psychrobacter glacincola. Microbiota of fish fed control diet and intestines exposed to C. divergens (group 2): All bacteria isolated from PI and DI of fish exposed to C. divergens at the first sampling (group 2) were identified as C. divergens. This observation indicates that C. divergens are able to adhere to the intestinal mucosa in both segments. Week 15 Microbiota of fish fed control diet and intestines exposed to saline (group 3): After 15 weeks of feeding on the control diet, the iso- lated strains (17) from the PI exposed to saline were dominated by C. divergens; 70.6 percent of the isolates were identified as C. divergens, 17.6 % were identified as Pseudomonas fulva, 5.9 % belonged to Pantoea spp. while 5.9 % of the isolates were identified as members of the class Gammaproteobacteria. The bacteria isolat- ed from the DI were identified as C. divergens, two strains as Vibrio splendidus, one strain as Shewanella baltica, one strain as Pseudomonas fulva and six other strains were identified as Gammaproteobacteria. Microbiota of fish fed control diet and intestines exposed to C. divergens (group 4). In the intestine of fish fed the control diet for 15 weeks and exposed to C. divergens, the identi- fied bacterial strains isolated from both PI and DI were dominated by C. divergens. Only one strain, identified as Pseudomonas spp., isolated from the PI of 1 fish did not belong to the species C. divergens. Microbiota of fish fed prebiotic diet and Table 4: Identification of LAB strains and pathogen antagonistic activity of extracellular products used in the in vitropathogen asays Isolate code Source group Intestinal region Closest known species Strain accession no Identity (%) antagonism 33 Group 2 Proximal C. divergens lHICa_53_4 FJ656716.1 98 Y. ruckeri a. Salmon 40 Group 2 Distal C. divergens lHICa_53_4 FJ656716.1 98 + - 75 Group 3 Proximal C. divergens lHICa_53_4 FJ656716.1 99 + - 84 Group3 Distal C. divergens lHICa_53_4 FJ656716.1 100 + - 14 Group5 Proximal Carnobacterium sp H126a eF204312.1 86 + - 57 Group5 Proximal C. divergens lHICa_53_4 FJ656716.1 99 + + 17 Group 5 Distal Carnobacterium sp H126a eF204312.1 99 + - 154 Group 5 Distal C. divergens lHICa_53_4 FJ656716.1 92 + - 173 Group 4 Proximal C. divergens lHICa_53_4 FJ656716.1 99 + - 127 Group 4 Distal C. divergens lHICa_53_4 FJ656716.1 99 + - 99 Group 8 Proximal C. divergens lHICa_53_4 FJ656716.1 99 + - *_originally isolated from the digestive tract of Atlantic salmon (salmo salar) [20] September-October 2013 | InternatIOnal AquAFeed | 45 EXPERT T●PIC
  • 13. intestines exposed to saline (group 5): The intestine exposed to saline of fish fed the prebi- otic diet for 15 weeks showed higher diversity compared to the other groups exposed to saline (groups 1 and 3). Of the 47 strains isolated from the PI, 14 were identified as C. divergens, one as Pseudomonasantarctica, one as Pseudomonas koreensis, four as Enterobacter hor- maechei and one as uncultured bacterial clone CK20. The remaining isolated strains were identified as members of the Carnobacterium and Acinetobacter genera. The dominant bacte- ria in the PI of this group belonged to carno- bacteria (81%) and 30 percent of total isolates were identified as C. divergens. The bacterial composition of the isolates from the DI of fish fed the prebiotic diet for 15 weeks were relatively low in diversity. Of the total number of strains isolated (44) from the DI exposed to saline 34 were identified as Carnobacterium, eight strains showed high similarity (%) to Pantoea spp. and two strains belonged to the genus Enterobacter. Microbiota of fish fed prebiotic diet and intestines exposed to C. divergens (group 6): In group 6, fish fed the prebiotic diets for 15 weeks and exposed to C. divergens, the isolated strains in the PI were dominated by C. divergens and C. divergens-like strains. Of the 22 carnobacteria isolated, five were identified as C. divergens by 16S rRNA sequencing while 17 isolates were identified as C. divergens-like. Three other isolates were identified as mem- bers of the genera Pseudomonas (2 strains) and Psychrobacter (one strain). Of the 17 strains isolated and idesntified from the DI of group 6, C. divergens and C. divergens-like strains domi- nated with only one isolate, which showed high similarity (99 percent) to Acinetobacter spp., not belonging to this species. Microscopical analyses Light microscopy (LM): All LM micro- graphs, both from PI and DI of the prebiotic groups (5 and 6) showed no morphological differences compared to the control feeding regime (groups 1-4). All intestinal sections examined appeared normal and healthy; no signs of detached enterocytes, necrotic ente- rocytes, widened lamina propria or necrosis were observed and the number of goblet cells were similar in both treatments (examples are displayed in Figure 1). Transmission electron microscopy (TEM): Similar to the observations using LM, TEM revealed no differences between treatments or exposure groups; all micrographs revealed healthy epithelial brushborder, no deteriation of tight junctions was observed and microvilli appeared uniform. The presences of rodlet- like cells (as shown in Figure 2) were present in the PI and DI of all groups. The numbers of rodlet cells present in the PI displayed great differences between individual fish but were always observed in the upper half of the epithelium, above the underlying intraepithelial lym- phocytes. In vitro growth inhibition of two fish pathogens by extracellular extracts of LAB isolated from ex vivo studies Identification by partial sequencing of the 16S rRNA genes of the eleven LAB strains isolated from the ex vivo experiments and subsequently used in the in vitro pathogen antagonism assays are displayed in Table 4. The results show that growth inhibition of Y. rückeri was obtained from extra- cellular extracts from all strains of carnobacteria isolated from the ex vivo experiment. However, in vitro growth inhibition of A. sal- monicida ssp. salmonicida was only obtained from the extracellular extract of C divergens isolate 57. The extracellular products from the positive control, C. inhibens CCUG 31728, did not inhibit the growth of A. salmonicida ssp. sal- monicida. Discussion The ex vivo intestinal sack method has been used in several studies to evaluate possible histo- logical changes in the fish intestine after exposure to high levels of LAB. The result of LAB exposure to the intestine is of high impor- tance as translocation and cell damage have been proposed as important criteria when evaluating 46 | InternatIOnal AquAFeed | September-October 2013 EXPERT T●PIC 8 – 10 April 2014 . Bangkok International Trade & Exhibition Centre (BITEC), Bangkok, Thailand New for 2014 Now including the first ASEAN Feed Summit Specialist conferences The exhibition will be supported by its own specialist conferences. They will include: The FIAAP Conference 2014 Petfood Forum Asia 2014 Aquafeed Horizons Asia 2014 The Thai Feed Conference 2014 Supported by The Thailand Convention and Exhibition Bureau Co-located with VICTAM Asia 2014 www.victam.com Contact details For visitor, exhibition stand space and conference information please visit: www.fiaap.com Asia’s foremost exhibition and conferences for the ingredients and additives used in the production of animal feeds, aquafeeds and petfoods FIAAP Asia 2014 is the only dedicated trade show and conference organised specifically for feed ingredients, additives and formulation within the dynamic and growing region of South and South East Asia. FIAAPisland:Layout 1 30/8/13 14:26 Page 1
  • 14. the use of probiotics in endothermic animals as well as in fish. Recently, the effect of ex vivo LAB exposure on the gut microbiota in fish was documented, but to the authors’ knowl- edge the effect of prebiotic supplementation and ex vivo LAB exposure of the fish intestine has not been investigated. The culturable bacterial levels recovered on TSAgs plates from groups exposed to saline were relatively low, ranging from log 1.72 to 2.34 CFU g-1. These values are low compared to autochthonous levels previously reported in Atlantic salmon and rainbow trout Oncorhynchus mykiss. This is likely due to the thorough rinsing process, three times prior and three times post probiotic/saline expo- sure. Culturable adherent bacteria in the PI observed in the prebiotic group exposed to saline (group 5) was log 2.34 CFU g-1. The fact that the value from this group is higher than in control groups exposed to saline water (log 1.72 and 2.08 CFU g-1), might be due to a feed- ing effect of the prebiotic diet. However, this hypothesis merits further investigations. Investigations of the qualitative and quantitative bacterial compo- sition of the intestinal microbiota were based on the study of 168 pure cultured bacterial isolates. These isolates were biochemi- cally tested in order to obtain a general classification. From this classification 111 isolates were selected by the lottery method and identified by 16S rRNA gene sequencing analysis. The bacterial levels observed in groups exposed to saline varied between segments and feeding regime. By comparing different feeding groups it is clear that the indigenous microbiota of the PI were affected by the diet, while the effect of prebiotic feeding on the microbiota was less clear in the DI. In the intestine exposed to C. divergens the average number of bacteria were higher in the PI when the fish were fed the prebi- otic diet compared to fish fed the control diet. Whether these findings can be related to a higher C. divergens colonization success in prebiotic fed fish merits further investigations. The bacterial composition from the PI in control groups, i.e. fish fed control diet, and thereaf- ter exposed to saline were domi- nated by members of a few gen- era (Psychrobacter, Carnobacterium and Pseudomonas). Psychrobacter, Carnobacterium and Pseudomonas spp. are commonly reported in the GI tract of fish, and these bacteria have previously been isolated and identified from the GI tract of sal- monids. Carnobacterium spp. have often been reported to be components of the gut micro- biota of salmonids; indeed, C. maltaromaticum, C. mobile, C. divergens and Carnobacterium spp. have been identified from Atlantic salmon. The consistency of isolation of these species indicates that these might be common core components of the GI microbiome of Atlantic salmon and are likely to be of importance to the host. The bacterial composition isolated from the DI in the first control group exposed to saline (group 1) were dominated by Pseudoalteromonas spp. and Psychrobacter spp., while in the other control group (group 3) Acinetobacter spp. and C. divergens were the dominant bacteria isolated. All of these listed bacteria have previously been isolated from the intestine of Atlantic salmon. The bacte- rial composition of the PI observed in the prebiotic fed fish exposed to saline (group 5) showed greater bacterial diversity than that observed from control fed fish exposed to saline (groups 1 and 3). The majority of the bacteria from the PI of group 5 were C. divergens and Carnobacterium spp., which together accounted for 81% of all the isolated bacteria. The two other bacterial species that were isolated from this group were Pantoea spp. and an unidentified member of the class Gammaproteobacteria. The abundance of culturable adherent Carnobacterium spp. (77% of isolates identified) was higher in the DI of the prebiotic fed fish (group 5), compared to control groups (group 1 = 0% and group 3 = 36%). These results suggest that the prebi- otic supplementation elevates autochthonous September-October 2013 | InternatIOnal AquAFeed | 47 EXPERT T●PIC 8 – 10 April 2014 . Bangkok International Trade & Exhibition Centre (BITEC), Bangkok, Thailand New for 2014 Now including the first ASEAN Feed Summit Specialist conferences The exhibition will be supported by its own specialist conferences: The FIAAP Conference 2014 Petfood Forum Asia 2014 Aquafeed Horizons Asia 2014 The Thai Feed Conference 2014 Biomass Pelleting Asia 2014 Supported by The Thailand Convention and Exhibition Bureau Co-located with FIAAP Asia 2014 and GRAPAS Asia 2014 www.fiaap.com /www.grapas.eu Contact details For visitor, exhibition stand space and conference information please visit: www.victam.com Asia’s largest exhibition and conferences for animal feed, aquafeed and petfood production VICTAM Asia 2014 is the largest trade show within South and South East Asia for displaying the latest equipment and technology used in the production of animal feeds, aquafeeds and dry petfoods. 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  • 15. Carnobacterium spp. levels, particularly in the DI. To the authors’ knowledge there is very little information regarding the effect of prebi- otics on carnobacteria within the GI tract of fish. However, some studies suggest that the carnobacteria populations within the GI tract of salmonids are effected by various dietary factors such as krill meal and oxytetracycline in Atlantic salmon and dietary carbohydrates in Arctic charr (Salvelinus alpinus L.). However, it was observed that the presence of dietary inulin (a prebiotic-type carbohydrate) tended to lower culturable autochthonous carno- bacteria levels (by ca. 90%) in the hindgut of Arctic charr and also elevated the proportion of C. maltaromaticum at the expense of C. divergens. These findings suggest that different prebiotics may influence different carnobacte- ria strains in different fish species. In all groups exposed to C. divergens in the ex vivo studies the same C. divergens strain was identified to dominate both the PI and DI after exposure. C. divergens levels were in the range of 104-106 CFU g-1 intestine which indicates that the bacteria are able to populate and potentially colonize the intestinal mucus and out-compete other adherent bacteria after only one hour of exposure. These results are in accordance with corresponding studies in that LAB are able to colonize the intestine of Atlantic salmon after one hour exposure. Despite the plethora of information avail- able on the prebiotic efficacy of elevating pro- biotic colonization (i.e. synbiotics) in various terrestrial species, little information is available in fish. Further studies should focus on this topic as the present study demonstrated that the presence of the dietary prebiotic, prebi- osal®, elevated the proportion of carnobac- teria from 71 - 81 percent in the DI (as well as elevating total bacterial levels, effectively quadrupling the number of carnobacteria) and from 33% to 77% in the PI (although the total bacterial population was lower). The histological effect of exposing the GI tract of Atlantic salmon to high levels of the C. divergens was investigated by light and elec- tron microscopy. Furthermore, the intestinal effects of feeding a prebiotic diet to Atlantic salmon were evaluated. Results from LM-investigations in the present study showed no apparent his- topathological changes of the epithelium in the PI or DI, after exposure of C. divergens. In particular the micrographs demonstrated that enterocytes showed no signs of junc- tional rupture from the basement membrane which is in contrast to observations of the PI of Atlantic salmon after exposure to Vibrio anguillarum and A. salmonicida. TEM observations confirmed the findings observed in LM regarding a lack of histological changes. TEM revealed no observable dif- ferences between the groups in respect to the presence of cell debris in the lumen, the amount of mucus, the number bacteria – like particles in the lumen and between the micro- villi, disorganized microvilli and disintegrated tight junctions. The enterocytes within all groups displayed normal cell contacts with unaffected tight junctions and zona adherens. The fact that C. divergens did not inflict dam- age to the intercellular unction is great impor- tantance since the loosening of these junctions contributes to a paracellular port of entry for potential pathogens. Rodlet cells were present in large numbers in the PI of all groups, while in the DI the number observed were lower. Since groups exposed to C. divergens did not dis- play any clear differences in number of rodlet cells compared to groups exposed to saline, their presence in those groups may therefore not be related to an immunological function towards the exposed bacteria. On the other hand, the role of rodlet cells as immune cells and their large number in the PI compared to the DI may be a defense function towards potential invading bacteria of the PI. Since the PI has been confirmed as being an infection route for pathogenic bacteria by several studies, the role of rodlet cells as immune cells in the PI is possible and warrants further investigation. The antimicrobial effects of LAB have long been utilized in food preservation by fermenta- tion and several comprehensive reviews have been published on the ability of LAB to pro- duce proteinaceous antimicrobial substances. In fish studies, the antagonistic effect of LAB has been carried out on Gram-negative fish patho- gens such as V anguillarum and A salmonicida. In the present study strong growth inhibition of Y. rückeri was recorded from extracellular extracts from late exponential growth phase from all of the eleven Carnobacteria strains iso- lated from the ex vivo experiments. However, the ability of the isolated strains to inhibit growth of A. salmonicida ssp. salmonicida was only observed from one strain isolated from the PI. The fact that only one (isolate 57) of the 11 strains displayed inhibitory effects towards A. salmonicida ssp. salmonicidais in accordance with the results of Ringø who observed a lack of antagonism when challenging A. salmonicida ssp. salmonicida to extracellular extracts from C. divergens strain Lab01. These results indicate that the production of extracellular products only, might not be sufficient for strains of C. divergens in late exponential growth phase, to inhibit growth of A. salmonicida ssp. salmonicida. The positive control bacteria, C. inhibens which Jöborn et al. reported to display antago- nistic effect against A. salmonicida, showed no sign of antagonism in the present study. This observation therefore indicates that antagonisitic activity of C. inhibens is only effective when cells are actively incubated together or that antago- nistic extracellular products are only produced by C. inhibens in the presence of A. salmonicida. The ability of C. divergens as useful probiot- ics with effects against Y. rückeri and A. salmoni- cida have previously been reported in vivo and in vitro. Kim and Austin observed that dietary provision of C. divergens strain B33, isolated from the intestine of healthy rainbow trout, increased survival of rainbow trout against A. salmonicida and Y. rückeri challenge by 60 percent compared to the control group. Even though strains of C. divergens show antagonistic effects against pathogens, the precise mecha- nism of action of antimicrobial compounds isolated from fish remains unclear, but sugges- tions about their ability of penetrating cell walls by forming pores and channels, thus rendering it more fragile and incapable of carrying out normal metabolism has been proposed. In order to confirm the in vitro probi- otic effect of C. divergens against Y. rückeri in Atlantic salmon, further investigations should therefore include in vivo challenges studies. By further applying electron microscopy, the physical interference mechanisms between C. divergens and Y. rückeri in the GI tract might be observed. Acknowledgements The authors thank the technical staff at EWOS Innovation AS for feed manufacture, analysis and running the feeding trial and thank Dr. Sigmund Sperstad and Dr. Chun Li, Norwegian College of Fishery Science, University of Tromsø for their inestimable help during 16S rRNA gene sequencing and in vitro growth inhibition. We also thank Randi Olsen and Helga Marie By at the EM department at University of Tromsø, and Anne Nyhaug at Molecular Imaging Centre, Institute for Biomedicine, University of Bergen for their inestimable help during light and electron microscopy analysis. This study was partially supported by grants from the Norwegian MABIT-program (project number AF0038). "The histological effect of exposing the GI tract of Atlantic salmon to high levels of the C. divergens was investigated by light and electron microscopy" This article was originally published on 48 | InternatIOnal AquAFeed | September-October 2013 EXPERT T●PIC
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