Gimias 1.2 & 1.3

GIMIAS 1.2 &1.3 Xavi Planes February of 2010 CISTIB Computational Imaging Simulation Technologies in Biomedicine Department of Information & Communication Technologies Universitat Pompeu Fabra Barcelona, Spain www.cilab.upf.edu

Outline ,[object Object],[object Object],[object Object],[object Object]

Command Line Plugins ,[object Object],[object Object],[object Object]

Command Line Plugins ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Command Line Plugins ,[object Object],[object Object],[object Object],[object Object],How?

Command Line Plugins (XML) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],<parameters> <label>Marching cubes Parameters</label> <boolean> <name>ComputeNormals</name> <longflag>--computeNormals</longflag> <label>Compute Normals</label> <default>false</default> <description> Normal computation is fairly expensive in both time and storage. If the output data will be processed by filters that modify topology or geometry, it may be wise to turn Normals and Gradients off. </description> </boolean> <double> <name>Value</name> <longflag>--value</longflag> <label>Value</label> <default>0.5</default> <description> Set a particular contour value at contour number 0. </description> </double> </parameters> <parameters> <label>IO</label> <description>Input/output parameters</description> <image fileExtensions = ".vtk"> <name>inputVolume</name> <label>Input volume</label> <channel>input</channel> <index>0</index> <description>Input Image</description> </image> </parameters> </executable>

Command Line Plugins (main) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Taverna Plugin (experimental) ,[object Object],[object Object]

Taverna Plugin (experimental) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

EDOM ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

ERCO ,[object Object],[object Object],[object Object],[object Object],[object Object]

Cmgui ,[object Object],[object Object],[object Object]

CMGUI Plugin ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Gimias 1.2 & 1.3

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