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Carbohydrate-based inducers of
cellular stress for targeting cancer cells
Fidelis Ndombera
WAYNE STATE UNIVERSITY CHEMISTRY DEPARTMENT
DETROIT, USA
Cancer metabolism generates high reactive oxygen species
O2
.-, H2O2, HO.
Nature, (2012) 491, 364
Redox balance control in cancer cells
Nature Reviews Drug Discovery (2013) 12, 931–947
ROS modulation as an anticancer strategy
normal cells cancer cells
ROS
level
Therapeutic
window
Cell death
Non-carbohydrate based ROS-modulating small molecules
Buthionine sulfoximine Gamma-glutamylcysteine synthetase inhibitor
Phenethyl isothiocyanate Activates NRF2/Phase II antioxidant enzymes
AAPS J. (2010) ; 12 (1): 87–97
Piperlongumine Depletes GSH by binding to Glutathione S-transferase pi
Nature. (2011) 475(7355): 231–234
Why design
Carbohydrate based ROS-modulating anti-cancer agents?
Position Emission Tomography
Scan image of lung cancer
2-deoxy-D-glucose 2-18Fluoro-2-deoxy-D-glucose
Oncogene (2006) 25, 4633–4646
• 250 mg/kg with radiotherapy
• 63 mg/kg with docetaxel
Strahlentherapie und Onkologie (2005), 181, 8,507-514
Cancer Letters (2014) 355, 176
hexokinase
Cancer Chemotherapy and Pharmacology (2013) 71, 2, 523-530
D-glucose-conjugates are tolerated by GLUT-1
Chem. Sci.(2013) 4, 2319
Paclitaxel
Small-molecule library of potential ROS inducers
46 small molecules
Bioorganic & Medicinal Chemistry Letters, Volume 26, Issue 5, 2016, 1452–1456
ROS Quantification using Dichloroflourescein Assay (DCF)
+ H2O2
Esterases
0.5mM 0.025mM 10mM
DCF Assay with H1299 Lung Cancer cell line
Excitation wavelength 485nm
Emission wavelength 535nm
0
5000
10000
15000
20000
25000
30000
35000
0 200 400 600
RFU
H2O2 concentration (µM)
DCF Assay: Hydrogen peroxide
5mins
30mins
60mins
4hrs
0
50
100
150
200
250
A1a
A1b
A3
A4
A5a
A5b
A6
A7
A8
B1
B2
B3a
B3b
B7a
B7b
B8
C1
C2
C4a
C4b
C5
C7
D1
D2
E1
E2
E5
E6
F1
F6
G5
G8
H1
H3
H5
H7a
H7b
H8
I4a
I4b
I7
I8
J5
J7
K8
L8
None
200 uM Compound (Measurements in duplicates)
G8
B8
A8
Fluorescence(Fi/Fo)Carbohydrate-based small-molecule ROS screening in H1299
cells
H8
K8
L8
0.5
1
1.5
2
2.5
0 25 50 75 100
Compound (μM)
O
OH
OHHO
NH
HO
A8
Fluorescence(Fi/Fo)
0.5
1
1.5
2
2.5
0 25 50 75 100
Compound (μM)Compound (μM)Compound (μM)Compound (μM)
Fluorescence(Fi/Fo)
ONH
HOOH
OH
C8
Concentration-dependent small-molecule ROS screening in
H1299 cells
0.5
1
1.5
2
2.5
0 25 50 75 100
Compound (μM)
Fluorescence(Fi/Fo)
O
OH
OH
NH
HO
HO
G8
0.5
1
1.5
2
2.5
0 25 50 75 100
Compound (μM)Compound (μM)Compound (μM)Compound (μM)
Fluorescence(Fi/Fo)
ONH
HO
OH
OHL8
Bioorganic & Medicinal Chemistry Letters, Volume 26, Issue 5, 2016, 1452–1456
0.5
1
1.5
2
2.5
0 25 50 75 100
Compound (μM)Compound (μM)Compound (μM)Compound (μM)
0.5
1
1.5
2
2.5
0 25 50 75 100
Compound (μM)Compound (μM)Compound (μM)Compound (μM)
Fluorescence(Fi/Fo)
Fluorescence(Fi/Fo)
O NH
HO OH
OH
ONH
HOOH
OH
H8 K8
O OH
HO OH
OH
O OH
HO OH
OH
0.5
1
1.5
2
2.5
0 25 50 75 100
Compound (μM)
Fluorescence(Fi/Fo)
H K
0.5
1
1.5
2
2.5
0 25 50 75 100
Compound (μM)
Fluorescence(Fi/Fo)
NH2
8
Concentration-dependent small-molecule ROS
screening in H1299 cells
Carbohydrate-based small-molecule cytotoxicity screening in
H1299 cells
0
20
40
60
80
100
120
A1a
A1b
A3
A4
A5a
A5b
A6
A7
A8
B1
B2
B3a
B3b
B7a
B7b
B8
C1
C2
C4a
C4b
C5
C7
D1
D2
E1
E2
E5
E6
F1
F6
G5
G8
H1
H3
H5
H7a
H7b
H8
I4a
I4b
I7
I8
J5
J7
K8
L8
None
Viability(Vi/Vo,%)
100uM Compound (Measurement in duplicates)
ONH
HOOH
OH
O NH
HO OH
OH
H8 K8
Concentration-dependent small-molecule cytotoxicity
screening in H1299 cells
0
20
40
60
80
100
120
0 20 40 60 80 100
H8
K8
Compound (μM)
Viability(Vi/Vo,%)
-20
0
20
40
60
80
100
120
0 100 200 300 400 500
H2O2
DG
Compound (μM)
Viability(Vi/Vo,%)
H2O2
A B
IC50=75µM
IC50=80µM
IC50=60µM
ONH
HOOH
OH
O NH
HO OH
OH
H8 K8
K8A raises ROS and is cytotoxic to H1299 cells
0
20
40
60
80
100
120
0 100 200 300 400 500
K8A
Compound (μM)Compound (μM)
Viability(Vi/Vo,%)
Ac2O/Pyridine
IC50=25µM
Bioorganic & Medicinal Chemistry Letters, Volume 26, Issue 5, 2016, 1452–1456
0
20
40
60
80
100
120
0 50 100 150 200 250
K
KA
Compound (μM)
Viability(Vi/Vo,%)
Breast Cancer
CNS Cancer
Colon Cancer
Leukemia
Melanoma
Non-Small Cell Lung
Cancer
Renal Cancer
0
20
40
60
80
100
%GrowthInhibition
National Cancer Institute Cell line
% Growth Inhibition at 10uM K8A
K8A is cytotoxic in some NCI-60 cell lines
ONE DOSE DATA FROM NATIONAL CANCER INSTITUTE
Bioorganic & Medicinal Chemistry Letters, Volume 26, Issue 5, 2016, 1452–1456
K8A activates AMPK and stabilizes p53
HEK 293 cells
AMPK
P53
cell growth control
K8A induces ER stress at lower concentrations than 2DG
Bioorganic & Medicinal Chemistry Letters, Volume 26, Issue 5, 2016, 1452–1456
HEK 293 cells
• ER covers 12% of the cell’s volume.
• Site of protein synthesis & folding.
• Folds 1/3 of all proteins.
Glucose-regulated protein 78
is a biomarker of ER stress
Does K8A interfere with protein glycosylation?
N-acetyl glucosamine β-O-linked N-acetyl glucosamine protein
N-acetyl glucosamine with alkyne handle Clickable glycoprotein
Hexosamine Biosynthetic
pathway
HB Salvage pathway
K8A blocks protein glycosylation
K8A(uM) - - 30 30 50 100
GluNAckyne(20uM) - + - + + +
K8A
Does K8A inhibit an enzyme in hexosamine
biosynthetic salvage pathway?
PNAS 100,9116-9122(2003)
PNAS 104,2614-2619(2007)
PNAS 104, 16793-16797(2007)
Science 337,975-980
Nature Communications(2015)6:8468
DOI:10.1038/ncomms9468
Summary and conclusion
• Development of a library of simple N-aryl glycoside derivatives from unprotected sugars.
• Cellular ROS and cytotoxicity assays of this N-aryl-glycoside library led to identifying the
potential candidate (K8A) that activates AMPK, and stabilizes p53 in HEK293 cells, and
induce cytotoxicity with a higher potency than 2-DG in H1299 cells and other cell lines.
• K8A blocks protein glycosylation which is upregulated in Cancer.
• Target identification will be further investigated in future studies
ACKNOWLEDGEMENT
Young-Hoon Ahn lab

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linked in PRESENTATION

  • 1. Carbohydrate-based inducers of cellular stress for targeting cancer cells Fidelis Ndombera
  • 2. WAYNE STATE UNIVERSITY CHEMISTRY DEPARTMENT DETROIT, USA
  • 3. Cancer metabolism generates high reactive oxygen species O2 .-, H2O2, HO. Nature, (2012) 491, 364
  • 4. Redox balance control in cancer cells Nature Reviews Drug Discovery (2013) 12, 931–947
  • 5. ROS modulation as an anticancer strategy normal cells cancer cells ROS level Therapeutic window Cell death
  • 6. Non-carbohydrate based ROS-modulating small molecules Buthionine sulfoximine Gamma-glutamylcysteine synthetase inhibitor Phenethyl isothiocyanate Activates NRF2/Phase II antioxidant enzymes AAPS J. (2010) ; 12 (1): 87–97 Piperlongumine Depletes GSH by binding to Glutathione S-transferase pi Nature. (2011) 475(7355): 231–234
  • 7. Why design Carbohydrate based ROS-modulating anti-cancer agents? Position Emission Tomography Scan image of lung cancer 2-deoxy-D-glucose 2-18Fluoro-2-deoxy-D-glucose Oncogene (2006) 25, 4633–4646 • 250 mg/kg with radiotherapy • 63 mg/kg with docetaxel Strahlentherapie und Onkologie (2005), 181, 8,507-514 Cancer Letters (2014) 355, 176 hexokinase Cancer Chemotherapy and Pharmacology (2013) 71, 2, 523-530
  • 8. D-glucose-conjugates are tolerated by GLUT-1 Chem. Sci.(2013) 4, 2319 Paclitaxel
  • 9. Small-molecule library of potential ROS inducers 46 small molecules Bioorganic & Medicinal Chemistry Letters, Volume 26, Issue 5, 2016, 1452–1456
  • 10. ROS Quantification using Dichloroflourescein Assay (DCF) + H2O2 Esterases 0.5mM 0.025mM 10mM DCF Assay with H1299 Lung Cancer cell line Excitation wavelength 485nm Emission wavelength 535nm 0 5000 10000 15000 20000 25000 30000 35000 0 200 400 600 RFU H2O2 concentration (µM) DCF Assay: Hydrogen peroxide 5mins 30mins 60mins 4hrs
  • 11. 0 50 100 150 200 250 A1a A1b A3 A4 A5a A5b A6 A7 A8 B1 B2 B3a B3b B7a B7b B8 C1 C2 C4a C4b C5 C7 D1 D2 E1 E2 E5 E6 F1 F6 G5 G8 H1 H3 H5 H7a H7b H8 I4a I4b I7 I8 J5 J7 K8 L8 None 200 uM Compound (Measurements in duplicates) G8 B8 A8 Fluorescence(Fi/Fo)Carbohydrate-based small-molecule ROS screening in H1299 cells H8 K8 L8
  • 12. 0.5 1 1.5 2 2.5 0 25 50 75 100 Compound (μM) O OH OHHO NH HO A8 Fluorescence(Fi/Fo) 0.5 1 1.5 2 2.5 0 25 50 75 100 Compound (μM)Compound (μM)Compound (μM)Compound (μM) Fluorescence(Fi/Fo) ONH HOOH OH C8 Concentration-dependent small-molecule ROS screening in H1299 cells 0.5 1 1.5 2 2.5 0 25 50 75 100 Compound (μM) Fluorescence(Fi/Fo) O OH OH NH HO HO G8 0.5 1 1.5 2 2.5 0 25 50 75 100 Compound (μM)Compound (μM)Compound (μM)Compound (μM) Fluorescence(Fi/Fo) ONH HO OH OHL8 Bioorganic & Medicinal Chemistry Letters, Volume 26, Issue 5, 2016, 1452–1456
  • 13. 0.5 1 1.5 2 2.5 0 25 50 75 100 Compound (μM)Compound (μM)Compound (μM)Compound (μM) 0.5 1 1.5 2 2.5 0 25 50 75 100 Compound (μM)Compound (μM)Compound (μM)Compound (μM) Fluorescence(Fi/Fo) Fluorescence(Fi/Fo) O NH HO OH OH ONH HOOH OH H8 K8 O OH HO OH OH O OH HO OH OH 0.5 1 1.5 2 2.5 0 25 50 75 100 Compound (μM) Fluorescence(Fi/Fo) H K 0.5 1 1.5 2 2.5 0 25 50 75 100 Compound (μM) Fluorescence(Fi/Fo) NH2 8 Concentration-dependent small-molecule ROS screening in H1299 cells
  • 14. Carbohydrate-based small-molecule cytotoxicity screening in H1299 cells 0 20 40 60 80 100 120 A1a A1b A3 A4 A5a A5b A6 A7 A8 B1 B2 B3a B3b B7a B7b B8 C1 C2 C4a C4b C5 C7 D1 D2 E1 E2 E5 E6 F1 F6 G5 G8 H1 H3 H5 H7a H7b H8 I4a I4b I7 I8 J5 J7 K8 L8 None Viability(Vi/Vo,%) 100uM Compound (Measurement in duplicates) ONH HOOH OH O NH HO OH OH H8 K8
  • 15. Concentration-dependent small-molecule cytotoxicity screening in H1299 cells 0 20 40 60 80 100 120 0 20 40 60 80 100 H8 K8 Compound (μM) Viability(Vi/Vo,%) -20 0 20 40 60 80 100 120 0 100 200 300 400 500 H2O2 DG Compound (μM) Viability(Vi/Vo,%) H2O2 A B IC50=75µM IC50=80µM IC50=60µM ONH HOOH OH O NH HO OH OH H8 K8
  • 16. K8A raises ROS and is cytotoxic to H1299 cells 0 20 40 60 80 100 120 0 100 200 300 400 500 K8A Compound (μM)Compound (μM) Viability(Vi/Vo,%) Ac2O/Pyridine IC50=25µM Bioorganic & Medicinal Chemistry Letters, Volume 26, Issue 5, 2016, 1452–1456 0 20 40 60 80 100 120 0 50 100 150 200 250 K KA Compound (μM) Viability(Vi/Vo,%)
  • 17. Breast Cancer CNS Cancer Colon Cancer Leukemia Melanoma Non-Small Cell Lung Cancer Renal Cancer 0 20 40 60 80 100 %GrowthInhibition National Cancer Institute Cell line % Growth Inhibition at 10uM K8A K8A is cytotoxic in some NCI-60 cell lines ONE DOSE DATA FROM NATIONAL CANCER INSTITUTE
  • 18. Bioorganic & Medicinal Chemistry Letters, Volume 26, Issue 5, 2016, 1452–1456 K8A activates AMPK and stabilizes p53 HEK 293 cells AMPK P53 cell growth control
  • 19. K8A induces ER stress at lower concentrations than 2DG Bioorganic & Medicinal Chemistry Letters, Volume 26, Issue 5, 2016, 1452–1456 HEK 293 cells • ER covers 12% of the cell’s volume. • Site of protein synthesis & folding. • Folds 1/3 of all proteins. Glucose-regulated protein 78 is a biomarker of ER stress
  • 20. Does K8A interfere with protein glycosylation? N-acetyl glucosamine β-O-linked N-acetyl glucosamine protein N-acetyl glucosamine with alkyne handle Clickable glycoprotein Hexosamine Biosynthetic pathway HB Salvage pathway
  • 21. K8A blocks protein glycosylation K8A(uM) - - 30 30 50 100 GluNAckyne(20uM) - + - + + + K8A
  • 22. Does K8A inhibit an enzyme in hexosamine biosynthetic salvage pathway? PNAS 100,9116-9122(2003) PNAS 104,2614-2619(2007) PNAS 104, 16793-16797(2007) Science 337,975-980 Nature Communications(2015)6:8468 DOI:10.1038/ncomms9468
  • 23. Summary and conclusion • Development of a library of simple N-aryl glycoside derivatives from unprotected sugars. • Cellular ROS and cytotoxicity assays of this N-aryl-glycoside library led to identifying the potential candidate (K8A) that activates AMPK, and stabilizes p53 in HEK293 cells, and induce cytotoxicity with a higher potency than 2-DG in H1299 cells and other cell lines. • K8A blocks protein glycosylation which is upregulated in Cancer. • Target identification will be further investigated in future studies