Prototype germplasm data portal (2006)
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Prototype Germplasm Data Portal, predecessor for the ALIS-Global of the GIGA project. Presentation for the Nordic Gene Bank board meeting on 4th December 2006.
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Prototype germplasm data portal (2006)
- 1. Exchange of germplasm datasets with PyWrapper/BioCASE GAIN Global Accession Information Network December 4, 2006 NGB Board Meeting 2006 Alnarp, Sweden Dag Endresen, Nordic Gene Bank
- 6. The present data flow from genebanks to EURISCO and ECCDBs
- 8. Decentralized model EURISCO (Data Portal Europe) Nordic Gene Bank (Northern Europe) IPK Gatersleben (Germany) IHAR (Poland) (Other European gene banks...) SINGER (Data Portal for CGIAR) (CGIAR International Future Harvest gene banks...) USDA GRIN (Data Portal USA) (USDA ARS National Germplasm Repositories...) WUR CGN (Netherlands) GBIF (Global Biodiversity Data Portal) USER GAIN (Global germplasm Data Portal) [chm.grinfo.net] Internet MCPD MCPD MCPD MCPD MCPD Svalbard International Seed Vault (Safe Backup)
- 16. Germplasm BioCASE entry points [http://chm.grinfo.net/index.php?app=data_providers]
- 18. PGR sub-unit of ABCD 2.06
- 20. GCP_Passport Upgrade to ABCD
- 24. Thank you for listening!
Notas do Editor
- There are more than 6 million ex situ accessions of agricultural and horticultural crops conserved worldwide by genebanks (seed banks) according to FAO.
- The passport data from most genebank datasets worldwide are indexed by EURISCO (European genebanks), SINGER (International CGIAR organizations) or USDA-GRIN (USDA ARS National Germplasm Repositories). Summary meta data on the datasets are collected and indexed by the FAO WIEWS database (World Information and Early Warning System on Plant Genetic Resources). FAO WIEWS. The World Information and Early Warning System (WIEWS ) on Plant Genetic Resources for Food and Agriculture (PGRFA) [http://apps3.fao.org/wiews/wiews.jsp]. GRIN Canada [http://pgrc3.agr.gc.ca/index_e.html] This a modification of a slide from Samy Gaiji, from presentation on: “ Information Networking - Challenges for the Plant Genetic Resources Communities, 2004.
- http://apps3.fao.org/wiews/wiews.jsp
- Arnica montana SPIMED Medicinal plants , Photographer Katarina Wdelsbäck (NGB Picture Archive, image 003907)
- Samy to provide more input...? Release in December 2006? With approximately 2.2 million accessions indexed. Helmut suggest to describe CHM
- Potato plants in greenhouse. Priekuli, Latvia. Photographer Dag Terje Endresen (NGB Picture Archive, image 002421)
- http://chm.grinfo.net/index.php?app=data_providers Temporary ”UDDI” Registry
- * Illustration: Corn earworm pupae that will be used to produce control parasites for release in the field. Photo by Scott Bauer. [http://www.ars.usda.gov/is/graphics/photos/k5554-2.htm] * UBIF is an attempt to define a common foundation for several TDWG/GBIF standards like SDD (see SDD WIKI), ABCD (see ABCD content schema homepage) or TaxonConceptNames (see Taxonomic Concept Transfer Schema WIKI). * Unified Biosciences Information Frameword (UBIF) XML schema for data exchange and integration across knowledge domains. The schema has been design for biological data, but is applicable to other knowledge areas as well. It is based on work of the TDWG SDD and ABCD subgroups and currently jointly authored by the SDD, ABCD, TaxonName subgroups and by GBIF (Global Biodiversity Information Facility). The framework may be used without changes for new schemata, no registration is necessary. * Complex Types are part of the UBIF infrastructure (TDWG common complex type for several schemas, ABCD, SDD, TCS, Lnnean Core, etc.)
- GCP_Passport v 1.03 [http://tor.ngb.se/dev/temp/gcp_passport_01_03.xsd] The GCP Passport 1.03 descriptor standard is based on the MCPD and ABCD standards and implemented for the PyWrapper/BioCASE data exchange software. A mapping for automatic “upgrade” between ABCD 2.06 and GCP_Passport_1.03 is also included in the PyWrapper/BioCASE software. The Generation Challenge Programme is a research and capacity building network that uses plant genetic diversity, advanced genomic science, and comparative biology to develop tools and technologies that enable plant breeders in the developing world to produce better crop varieties for resource-poor farmers. [http://www.generationcp.org]
- Photo: Field been from Boreal, accession NGB11518, 2005-03-05, Dag Endresen [http://r142b.ngb.se/ngb/2005-03--the-making-of-seeds-pictures/index.php?offset=19&size=medium&stp=1]
- Solanum tuberosum L. Potato. Light sprout. Photographer NGB (NGB Picture Archive, image 001289).