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Presentation of  Web Services for the Training Workshop on interoperability June 13, 2005 – IPGRI, Rome Dag Terje Filip Endresen – The Nordic Gene Bank
TOPICS for this talk ,[object Object],[object Object],[object Object],[object Object]
Simplicity and global standards ,[object Object],[object Object],[object Object]
Web Service definition – W3C ,[object Object],[object Object],[object Object],[object Object],[object Object]
Web Service definition - Wikipedia ,[object Object],[object Object],[object Object],[object Object],[object Object]
Some web service keywords ,[object Object],[object Object],[object Object]
Combination of services ,[object Object],Seed bank Accession Inventory Weather Info Service GIS Species Occurrences Service New service to  plan collecting  missions for  under-collected  species to a  period of good weather.
Some Web Service standards ,[object Object],[object Object],[object Object],[object Object]
Example of a web service call ,[object Object]
Example of a service response
Message transport protocols ,[object Object],[object Object]
Regular SOAP message Information intended for the recipient is written in the  body .  Such as Remote Procedure Call information, XML messages, or error messages. The  header  contains additional information on the SOAP message . Such as digital signature information, transaction information, and routing information.   The SOAP envelope consists of a header and a body.
Communication protocol  Although SOAP does not depend on the underlying communication protocol, HTTP is usually used. Because of this, it is possible to communicate with Web services protected by firewalls.
Data warehouse model (Slide by Samy Gaiji)
Decentralized model (Slide by Samy Gaiji)
Network data flow ,[object Object],[object Object],Provider wrapper software Provider etc... DB User Database Portal
Biodiversity collections data ,[object Object],[http://www.bgbm.org/TDWG/CODATA/ABCD-Evolution.htm]
TDWG  T axonomic  D atabases  W orking  G roup ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object]
Darwin Core 2 (DwC2) ,[object Object],[object Object],[object Object],[object Object]
ABCD   A ccess to  B iological  C ollection  D ata ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
PGR sub-unit of ABCD ,[object Object]
MCPD   M ulti  C rop  P assport  D escriptors ,[object Object],[object Object],[object Object],[object Object],[object Object]
IPGRI Crop Specific Descriptors ,[object Object],[object Object],[object Object]
[object Object]
DiGIR Di stributed  G eneric  I nformation  R etrieval ,[object Object],[object Object],[object Object],[object Object],[object Object]
BioCASE  Biological Collection Access for Europe ,[object Object],[object Object],[object Object],[object Object],[object Object]
BioMOBY ,[object Object],[object Object],[object Object],[object Object]
Protocol integration - TAPIR ,[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object]

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Web service technologies, at CGIAR ICT-KM workshop in Rome (2005)

  • 1. Presentation of Web Services for the Training Workshop on interoperability June 13, 2005 – IPGRI, Rome Dag Terje Filip Endresen – The Nordic Gene Bank
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  • 10. Example of a service response
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  • 12. Regular SOAP message Information intended for the recipient is written in the body . Such as Remote Procedure Call information, XML messages, or error messages. The header contains additional information on the SOAP message . Such as digital signature information, transaction information, and routing information. The SOAP envelope consists of a header and a body.
  • 13. Communication protocol Although SOAP does not depend on the underlying communication protocol, HTTP is usually used. Because of this, it is possible to communicate with Web services protected by firewalls.
  • 14. Data warehouse model (Slide by Samy Gaiji)
  • 15. Decentralized model (Slide by Samy Gaiji)
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Notas do Editor

  1. * Spiders-web, photographer: Ian-Britton [http://www.freefoto.com/preview.jsp?id=01-17-1&k=Spiders+Web]
  2. Photo: IRRI genebank. Los Banos, Philippines [http://www.cgiar.org/images/irrigenebank1.jpg], VIR seed collection. St. Petersburg. Photographer Eva Thörn (NGB Picture Archive, image 001319).
  3. The text formulation above is edited from various sources – on search hits with google.
  4. * W3C Web Services Glossary. W3C Working Group Note 11 February 2004 [http://www.w3.org/TR/ws-gloss/] * Spiders-web, photographer: Ian-Britton [http://www.freefoto.com/preview.jsp?id=01-17-1&k=Spiders+Web] * Copyright statement “feel free to use any of the images on the site if you are a private individual and your use is not commercial” [http://www.freefoto.com/browse.jsp?id=99-5-0]
  5. Some examples to use...? * http://www.xmethods.com * http://www.xmethods.com/ve2/ViewListing.po;jsessionid=tYR5gLa3iESq9FYCW1m1IqHo(QHyMHiRM)?key=uuid:57D835E5-B4A5-4C4A-38E8-37E964100CF8 * http://services.bio.ifi.lmu.de:1046/prothesaurus/
  6. Perhaps this slide is too much ... ? * WS-Security : The Web Services Security protocol has been accepted as an OASIS standard. The standard allows authentication of actors and confidentiality of the messages sent. (taken out to simplify the slide...)
  7. Slide by Samy Gaiji, from presentation on: “ Information Networking - Challenges for the Plant Genetic Resources Communities, 2004.
  8. Slide by Samy Gaiji, from presentation on: “ Information Networking - Challenges for the Plant Genetic Resources Communities, 2004.
  9. * IRRI genebank. Los Banos, Philippines [ http://www.cgiar.org/images/irrigenebank2.jpg] * Text formulation source [http://www.bgbm.org/TDWG/CODATA/ABCD-Evolution.htm] wording above is modified.
  10. * The mapping of MCPD to ABCD was started in 2004 by Helmut Knüpffer and Walter Berendsohn, and finalized by Javier de la Torre and Dag Terje Filip Endresen in 2005. [ http://ww3.bgbm.org/MCDPH]
  11. * Multi-crop Passport Descriptors (MCPD) [http://www.ipgri.cgiar.org/publications/pdf/124.pdf] F AO (Food and Agricultural Organization of the United Nations) - IPGRI (International Plant Genetic Resources Institute). This is a revised version (December 2001) of the 1997 MCPD List. * FAO World Information and Early WarningSystem ( WIEWS) [http://apps3.fao.org/wiews/] * 19 Plant Uses Categories based on categories developed for the Working Group on Taxonomic Databases (TDWG) (Cook, Frances E.M., 1995. Economic Botany: Data Collection Standard. Royal Botanic Gardens Kew). [ http://www.ecpgr.cgiar.org/epgris/Training/MCPD-1998.doc] * The mapping of MCPD to ABCD was started in 2004 by Helmut Knüpffer and Walter Berendsohn, and finalized by Javier de la Torre and Dag Terje Filip Endresen in 2005. [ http://ww3.bgbm.org/MCDPH]
  12. * IPGRI Descriptors lists [http://www.ipgri.cgiar.org/system/page.asp?frame=programmes/inibap/home.htm] (119 descriptor lists, 2005) * MCPD [http://www.ipgri.cgiar.org/publications/pdf/333.pdf] * UPOV - International Union for the Protection of New Varieties of Plants (UPOV) [ http://www.upov.int/] * UPOV - The International Union for the Protection of New Varieties of Plants or UPOV (French: Union internationale pour la protection des obtentions végétales) is an intergovernmental organization with headquarters in Geneva, Switzerland. [http://en.wikipedia.org/wiki/UPOV] * COMECON - The Council for Mutual Economic Assistance (COMECON / Comecon / CMEA / CEMA), 1949 – 1991, was an economic organisation of communist states and a kind of Eastern European equivalent to the European Economic Community. The military counterpart to the Comecon was the Warsaw Pact. [http://en.wikipedia.org/wiki/Comecon]
  13. Major contributors to DiGIR is the MaNIS project (University of California, Berkeley) and GBIF.
  14. BioCASE development is coordinated by the Botanischer Garten und Botanisches Museum Berlin-Dahlem – BGBM.
  15. Photo: PICT0173.jpg Sub-section from Whale Safari to Kaikoura New Zealand. Photo Dag Terje Filip Endresen [http://r142b.ngb.se/ngb/2004-10-New-Zealand-Australia/index.php?offset=79&size=medium&stp=1]
  16. * Illustration: Tapir - © 1999-2005 www.barrysclipart.com (Licence “Feel free to use Barrys Clipart Server content in personal/ non profit projects to create webpages…”) [http://www.barrysclipart.com/barrysclipart.com/showphoto.php?photo=13376&papass=&sort=1&thecat=149] Not Quality counts: Chemist Gary List checks soybeans. Photo by Keith Weller. [ http://www.ars.usda.gov/is/graphics/photos/k5256-2.htm]