ChemSpider - Building a Crowdsourced Chemical Database for the Chemistry Community
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This is the presentation I gave at OpenSciNY 2010. It was a great gathering of Librarians and people interested in Open Science. Sharing the stage with Beth Brown Jean-Claude Bradley and Heather Joseph was, as usual, a good opportunity to discuss how openness and online data sharing is changing the way we access and share data. We live in interesting and exciting times.
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ChemSpider - Building a Crowdsourced Chemical Database for the Chemistry Community
- 1. ChemSpider - Building a Crowdsourced Chemical Database for the Chemistry Community OpenSciNY, New York, May 2010,
- 2. Once Upon a Time Over a “Coffee”
- 3. Which is better for Plants? Vodka, Sprite or Viagra?
- 4. It Works – Viagra Wins the Day
- 9. What is Cialis? Can we trust Wikipedia?
- 10. What is Cialis? 6 hits on PubChem
- 11. What is Cialis?
- 12. Search by Trade Name
- 13. Are there other names???
- 15. Are there other names???
- 16. Are There Other Names?
- 17. IC351 on PubChem? 5 HITS for IC351 ZERO HITS for IC 351
- 20. The RSC Publishing Platform (Beta)
- 21. 2+2 = 4 Articles?
- 24. CAS Registry – LOTS of Chemicals!
- 27. The Final Search Strategy A “Disambiguation Query!”
- 28. All Those Names, One Structure A problem to solve…
- 33. Question Everything online: www.dhmo.org
- 38. It’s all on Wikipedia…
- 39. What About Gases? Methane…
- 40. What’s Methane?
- 41. What’s Methane?
- 42. What ELSE is Methane???
- 43. Structural Data for Life Sciences DailyMed
- 45. Incorrect Structures
- 47. Search “OEA”
- 48. Search OEA
- 49. Search OEA
- 50. Search OEA
- 51. Linked Patents for OEA
- 53. Back to Cialis…
- 55. Google Patents
- 56. ChemSpider – Patents Linked SURECHEM PATENTS GOOGLE
- 57. Google Books
- 59. Google Scholar – Articles were found by CAS Number !
- 62. Validated Dictionaries Hit APIs This is data curation...
- 63. Does this generate more results?
- 64. RSC Journals
- 65. RSC Journals REMEMBER 2+2 = 4
- 66. PubMed
- 67. Google Scholar – Expanded Hit Set
- 72. Link the Internet with InChIKeys! Taken from: Rafael Sidis’ Blog
- 74. Multiple Layers
- 75. InChIStrings Hash to InChIKeys
- 76. Cialis – Searching the Web by InChI Search Molecular SKELETON Search Full Molecule
- 77. InChI Search the Web by Skeleton 78 Hits by Skeleton
- 78. InChI Search the Web Exact Match 32 Hits by InChIKey
- 79. InChI Search the Web Exact Match 6 Hits by Standard InChIKey
- 81. Vancomycin – Search the Internet
- 82. Full Molecule Search: 4 Hits
- 83. Full Skeleton Search: 104 Hits
- 84. InChIKeys Make the internet searchable by adding InChIKeys Publishers add InChIKeys to papers now… But what is the structure???
- 85. We need an InChI “Resolver”
- 86. InChI Resolver to DOIs Structure Search the Web
- 87. Semantic Markup: Project Prospect
- 88. Depends on Validated Dictionaries Link to a Structure or the Right Structure?
- 92. Org Prep Daily (Blog)
- 97. ChemSpider : Spectra Linked
- 98. Spectra Linked
- 99. Spectra Linked
- 100. Not Just NMR Data
- 102. Spectral Game
- 104. Spectral Game
- 106. Roses’ Crystal Image Collection
- 107. MP3s and Videos : Titanium
- 112. Thank you [email_address] Twitter: ChemSpiderman www.chemspider.com/blog SLIDES: www.slideshare.net/AntonyWilliams